mRNA_C-linearis_contig7.14523.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14523.1 vs. uniprot
Match: D7G1T7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T7_ECTSI) HSP 1 Score: 608 bits (1568), Expect = 5.470e-202 Identity = 440/958 (45.93%), Postives = 503/958 (52.51%), Query Frame = 1
Query: 19 LNSPLLLDGLTPALRQLKDCRHAIPLS--------GSCGRAQGCLTCKLAAKVMKDVEKEQRAAEDLERQKQAAVELVWARARRDLLLMRHPTNWAGCSLLQGPRPERCREQKPDAGVAAHEDDLETDRGDTAARQTHRERXXXXXXXXXXXXXIEEDSRPKLVPGAMLTLSHQAAEAIMAFTEEVLGEEDPKRRAKKALAIVAEATLEVAFANRRGHPRTGVLVTKLQAAARGWLARRLARVLLLRGGCRRELDVASGAFQYVWTYRTA-SDAPTPAGD-DGRRAHGGG-----------GGD--EGLFRSWYPPTLLKNETLPSPRAALRRVEGEEKKRTARLALAKYLLDDQRDQLNERDIRAGRLLALAEVVKLAGRVMVSLESAALSCFGNDSNPPGVSVKVLHPRGGEPGDGAREAVVSEIMGAWDLIDTKVRERAEAARIRAERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTPRPGSKGGK------KEAQLSVPTTNDNLAEFEKRLLQDSLHEDASTAVASLLQRKLVPVAIHEASRLGRNREAWEKKGTSPFGLGMQVFPPWARASHRFVALAHRGRLVAVSQASPFVYWESLASKAHAEHILRGVLRPFLENADLLRAIFIDGGHPSTDGAADAD-ATATRRPTTTGSKAGGIRDGETRSGGEWSPPPSAXXXXXXXXXXXXAPAEAKNGEKSRSEGEDERAAGDSSIGSWGYRSSLSSRGGWKVDAWAAARRDGSIELGFDSAAFDVFVRPEEXXXXXXXXXXXXXXXXX-----------------CSPAA---VVTNVVPFRLADGLPRELGPLLFDKKIIASLSADXXXXXXXXXXXXXXXXXXXGKQAGTTAEQQE--GSDLSPEGETLEEEETWDALWVRKKASNSAGPVLSHVRHVHRVGAAEGEK-VEVRIRGEPLGAEALVMVELPQDMAALVV 2733
+ S L+ GLTPALRQLKDCRH P S G+ QGCLTC GPRPER E +P+ ET GD A E DSRPKLVPGAMLT S+ A A+ AF EEVL EEDP RRA KA AIV EAT EV+FANRR HPRT VLVT+LQA RGWLARRLARVLLLRGGCRRELDVASGA+QYVW++R A AP A GR ++ GG GGD EGLFR+WYPP LLKNE+LPSPRAA RRVEGE +KR ARLALA LLDDQR +LN RD RA RLLAL EVVKL R M SLE AAL+CFG S P +SVKVLHPRGGEPGDGAREAVV+EIM AW ID +VRE+ EAAR+RAER RTPR GS+ G+ +EA+LSVPTTN+NLA FE+ A LL R+ V L EA + P G +QVFPPWA ASHRF+AL HRG LVAVSQASPFV+WE+LA + ++ +L PFLEN DLL+A F D P + A AT+ R TT + + +GG+ S+ E N E S A G G WGYRSSLSS+G WK+DA A ARRD S++LGFDS AFD+FV P+E SP A VVTN VPFRLADGLPRELGPLLF+ ASL A + T E GS E EEEE ++ W RKK SAG +LSH R G+ E VEVRIRGE LGA+ L LP D+ +LVV
Sbjct: 1 MQSALMAGGLTPALRQLKDCRHTFPSSKWDTRDSQGAPRHGQGCLTCN------------------------------------------------------GPRPERPTELEPNN---------ETGTGDFGAILNGIEEGGRVERCGG-------DSRPKLVPGAMLTFSNTAVAAVKAFAEEVLAEEDPPRRATKAAAIVKEATTEVSFANRRNHPRTEVLVTRLQAVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPGAAATAPGRASYAGGIGGGGYRSPACGGDGGEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEEAALTCFGTGSEPLAISVKVLHPRGGEPGDGAREAVVTEIMSAWHRIDAQVREQEEAARLRAERTNDKGKSPKTSPNRGGGVSAR---------RTPRSGSREGRGKSTGRREAKLSVPTTNENLAAFEQ-------------IAARLLARRRV-----RGGGLSSPEEASAR--LHPRGFKIQVFPPWALASHRFIALVHRGSLVAVSQASPFVFWENLADRKKTNQLIADILGPFLENPDLLKAAFAD--EPGERASVPATKATSAGRSTTNNAVSTARETPGDGAGGDGEQSTSSSVAEAGDTGVRQIGRE--NEEGSXXXXXXXXADG----GMWGYRSSLSSKGCWKIDARAVARRDSSLKLGFDSVAFDLFVLPDEKKGGKKGGQEPPAAPSVGKQRHATRVNDHEEDESSSPRATRAVVTNAVPFRLADGLPRELGPLLFEDTSDASLLAGDAAEDHPQSRGAKRKP----EHPRVTVSDPELVGSRPEEAEEETEEEEGYE--WERKKDPRSAGKILSHTRR----GSGPSEAAVEVRIRGETLGADQLARAGLPHDLFSLVV 841
BLAST of mRNA_C-linearis_contig7.14523.1 vs. uniprot
Match: A0A6H5KM98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM98_9PHAE) HSP 1 Score: 377 bits (969), Expect = 2.180e-119 Identity = 238/438 (54.34%), Postives = 262/438 (59.82%), Query Frame = 1
Query: 19 LNSPLLLDGLTPALRQLKDCRHAIPLS--------GSCGRAQGCLTCKLAAKVMKDVEKEQRAAEDLERQKQAAVELVWARARRDLLLMRHPTNWAGCSLLQGPRPERCREQKPDAGVAAHEDDLETDRGDTAARQTHRERXXXXXXXXXXXXXIEEDSRPKLVPGAMLTLSHQAAEAIMAFTEEVLGEEDPKRRAKKALAIVAEATLEVAFANRRGHPRTGVLVTKLQAAARGWLARRLARVLLLRGGCRRELDVASGAFQYVWTYRTA-SDAPTPAGDDGRRAHGGGGGD--------------EGLFRSWYPPTLLKNETLPSPRAALRRVEGEEKKRTARLALAKYLLDDQRDQLNERDIRAGRLLALAEVVKLAGRVMVSLESAALSCFGNDSNPPGVSVKVLHPRGGEPGDGAREAVVSEIMGAWDLIDTKV 1263
+ S L+ GLTPALRQLKDC+H P S G+ QGCLTC + RH GPRPER RE +P+ ET GD A E DSRPKLVPGAMLTLS+ A A+ AF EEVL EE+P +RAKKALAIV EAT EVAFANRR HPRTGVLV A RGWLARRLARVLLLRGGCRRELDVASGA+QYVW++R A APT GR ++ GGG EGLFR+WYPP LLKNE+LPSPRAA RRVEGE +KR ARLALA LLDDQR +LN RD RA RLLAL EVVKL R M SLE AALSCFG DS P +SVKVLHPRGGEP DGAREAVV+EI+ AW IDT+V
Sbjct: 1 MQSALMAGGLTPALRQLKDCQHTFPSSQWDTRDSQGAPRHGQGCLTCNV----------------------------------------RH-----------GPRPERPRELEPNN---------ETGTGDFDAILNGIEGGGQVERRGG-------DSRPKLVPGAMLTLSNTAVAAVKAFAEEVLAEENPAQRAKKALAIVKEATTEVAFANRRNHPRTGVLV----AVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPTATAGPGRASYAGGGSGGXXYRSPVXXXXXXEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASLEDAALSCFGTDSEPLAISVKVLHPRGGEPWDGAREAVVTEIISAWHRIDTQV 367
BLAST of mRNA_C-linearis_contig7.14523.1 vs. uniprot
Match: A0A6H5KN18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN18_9PHAE) HSP 1 Score: 301 bits (772), Expect = 3.310e-88 Identity = 231/570 (40.53%), Postives = 270/570 (47.37%), Query Frame = 1
Query: 1246 LIDTKVRERAEAARIRAERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTPRPGSK------GGKKEAQLSVPTTNDNLAEFEKRLLQDSLHEDASTAVASLLQRKLVPVAIHEASRLGRNREAWEKKGTSPFGLGMQVFPPWARASHRFVALAHRGRLVAVSQASPFVYWESLASKA--------HAE------------------------------------------HILRGVLRPFLENADLLRAIFIDGGHPSTDGAADADATATRRPTTTGSKAGGIRDGETRSGGEWSPPPSAXXXXXXXXXXXXAPAEAKNGEKSRSEGEDERAAGDSSIGSWGYRSSLSSRGGWKVDAWAAARRDGSIELGFDSAAFDVFVRPEEXXXXXXXXXXXXXXXXXCSPA------------------AVVTNVVPFRLADGLPRELGPLLFDKKIIASLSADXXXXXXXXXXXXXXXXXXXGKQAGTTAEQQEGSDLSPEGETLEEEETWDALWVRKKASNSAGPVLSHVRHVHRVGAAEGEKVEVRIRGEPLGAEALVMVELPQDMAALVV 2733
+ +VRE+ EAAR+RAER RTPR GS+ G++EA+LSVPTTN+NLA FE+RLLQDSLHEDAS AVASLLQRK V IHEASRLGRN +AW K+ +SPFGLG VFPPWA ASHRF+AL HRG LVAVSQASPFV+WE+L S+ HA+ ++ +L PFLEN DLL+A D A+ +A+R T S A I GE SP S + EG AA D G WGYRSSLSS+G WK+DA AA RRD S++LGFDS AFD+FV P E A AVVTN VPFRLADGLPRELGPLLFD ASL A + + +GS+L E EEE + W KK SAG +LSH HR VEVRIRGE L A+ L LP D+ LVV
Sbjct: 1 MTQVEVREQEEAARLRAERTNDKGKSPKTSPNRGVGVSAR---------RTPRSGSREGRGKSAGRREAKLSVPTTNENLAAFEQRLLQDSLHEDASEAVASLLQRKRVLGCIHEASRLGRNEKAWGKQSSSPFGLG--VFPPWALASHRFIALVHRGSLVAVSQASPFVFWENLVSECETSDYCIVHAQTHRRKRFNVLVTEYLNISSLWASPLIIVRKNINMKAERRKTNQLIADILGPFLENGDLLKAALEDEQGARASVPANRATSASRATTNAVSTAREIPGDGAGGDGEQSPSSSVAEAGDTGVRQIG---------RENEEGSAAAAAADG--GMWGYRSSLSSKGCWKIDARAAGRRDSSLKLGFDSVAFDLFVLPHEKGDKKGGEEPAAPPERKQRHATRVNGHEEAKSSSHRATRAVVTNAVPFRLADGLPRELGPLLFDDTSDASLLAGDAAEYHPQSRVAKRRPEHP--LVTVSDPELDGSELEEVEEEAEEEHEYG--WESKKDPRSAGQILSHT---HRGSGPSEAAVEVRIRGETLSADQLARAGLPHDLFGLVV 541 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14523.1 >prot_C-linearis_contig7.14523.1 ID=prot_C-linearis_contig7.14523.1|Name=mRNA_C-linearis_contig7.14523.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=911bp MLKPRQLNSPLLLDGLTPALRQLKDCRHAIPLSGSCGRAQGCLTCKLAAKback to top mRNA from alignment at C-linearis_contig7:2841531..2848603- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14523.1 ID=mRNA_C-linearis_contig7.14523.1|Name=mRNA_C-linearis_contig7.14523.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7073bp|location=Sequence derived from alignment at C-linearis_contig7:2841531..2848603- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:2841531..2848603- >mRNA_C-linearis_contig7.14523.1 ID=mRNA_C-linearis_contig7.14523.1|Name=mRNA_C-linearis_contig7.14523.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5466bp|location=Sequence derived from alignment at C-linearis_contig7:2841531..2848603- (Chordaria linearis ClinC8C monoicous)back to top |