mRNA_C-linearis_contig7.14519.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE) HSP 1 Score: 250 bits (639), Expect = 1.020e-75 Identity = 141/260 (54.23%), Postives = 165/260 (63.46%), Query Frame = 2
Query: 215 YCFCSVFARQPRTPGARGDVVMRLWRLLPPVETRLRAAGYDLTFFDWRGAEANEPLAAAGGGGVAATSC------GDAVAEHILGCEIYWSRHGDDVRRGGEEAARTHAGGGRATREEEGSESIGVDGTCSCGSGDIAAVGALSSPAAVSPEGASFVGLMGEDDSGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREGNFVYGNQRSVPYKMRRVVAPGALAWTLGAEHRTKEAYAEKMSAIGVVPGQRMGPPVR 976
Y S A P TPGARG+ VMRLWRLLP VE RLRA YDLT F W ++N+ + G + C G+ V E + GCEIYW RH + GGE+ G +++ ++ G+G+ AA G G SFVGLMG+DDSGTWV+SQNV GLEILVKDDLR+W D LWVNDRGFDR+GNFVYGNQR VPYKMRRV A G L WTLGA HRT++ YAEKMSAIGV GQR+ PPVR
Sbjct: 167 YRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDLTSFSWSDDDSNQREPSRGSDNASNDRCSKEGRTGNDVVERMFGCEIYWGRH----QAGGEDEKSMPGGISGPGKQDANGGAVPER-----GAGEDAAGGG----------GKSFVGLMGKDDSGTWVESQNVDGLEILVKDDLRLWPDSLWVNDRGFDRDGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAEKMSAIGVTLGQRLRPPVR 407
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: D7G1T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T3_ECTSI) HSP 1 Score: 191 bits (484), Expect = 4.270e-56 Identity = 89/108 (82.41%), Postives = 97/108 (89.81%), Query Frame = 2
Query: 653 GASFVGLMGEDDSGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREGNFVYGNQRSVPYKMRRVVAPGALAWTLGAEHRTKEAYAEKMSAIGVVPGQRMGPPVR 976
G SFVGLMGEDDSGTWV+SQNV GLEILVKDDLR+W D+LWVNDRGFDR+GNFVYGNQR VPYKMRRV A G L WTLGA HRT++ YAE+MSAIGV PGQR+GPPVR
Sbjct: 32 GKSFVGLMGEDDSGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAERMSAIGVTPGQRLGPPVR 139
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC) HSP 1 Score: 86.3 bits (212), Expect = 3.530e-15 Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 2
Query: 701 VQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREG-NFVYGNQRSVPYKMRRV----------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
V+SQ + G +IL+KD L +W D+LW++DRGFD + F+YGNQR VPY++ RV + LAWTLG + R++ Y +KM A+G
Sbjct: 218 VESQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLERVTDIALNNGRTIVQEDLAWTLGPDFRSEGEYQDKMVAVG 308
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S2A9U5_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9U5_TRICV) HSP 1 Score: 84.0 bits (206), Expect = 3.640e-15 Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = 2
Query: 701 VQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREG-NFVYGNQRSVPYKMRRV----------------------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
V S + G +I V+D+L +W LW+NDRG+D EG +FVYGNQR VPY+M RV V G L WTLG HRT+ Y E++ AIG
Sbjct: 92 VPSLMIPGAKIRVRDELSLWDGALWINDRGYDPEGGDFVYGNQRGVPYEMGRVTTFLRGDGDGEGSPPLFATERTVVNGDLKWTLGPRHRTEGLYRERVEAIG 194
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S2SCY1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCY1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.610e-14 Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 2
Query: 689 SGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREG--NFVYGNQRSVPYKMRRV--------------VAPGALAWTLGAEHRTKEAYAEKMSAI 937
+GT V SQ + G+ I ++D+L +W ++ W+NDRG D + +F+YGNQR +PYK++RV + LAWTLG +HRT+ Y + M+ I
Sbjct: 156 NGTTVASQVIPGMYINIRDELSLWKNEFWINDRGLDPQNVSSFIYGNQRGIPYKLKRVTQNNNIFRQWKPRMIHDPKLAWTLGPDHRTEFDYQQMMNEI 254
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC) HSP 1 Score: 82.0 bits (201), Expect = 1.960e-13 Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 2
Query: 659 SFVGLMGEDDSGTWVQSQN-VAGLEILVKDDLRVWSDQLWVNDRGFDREGN-----------FVYGNQRSVPYKMRRV------------VAP--GALAWTLGAEHRTKEAYAEKMSAI 937
SF M SG V S + + G IL+KD+L +W D+ W+NDRG+D +G FVYGN+R VPYK+ RV VAP G L WTLG +RT Y K+ AI
Sbjct: 271 SFHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYDPDGETDSMNENQDMPFVYGNRRGVPYKLERVSHIVSTAGAELQVAPVSGELQWTLGGSYRTPGEYEAKLKAI 389
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: B8BPX0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPX0_THAPS) HSP 1 Score: 80.1 bits (196), Expect = 2.460e-13 Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 2
Query: 716 VAGLEILVKDDLRVWSDQLWVNDRGFD-----REGN----------FVYGNQRSVPYKMRRV----------------VAPGALAWTLGAEHRTKEAYAEKMSAIGVVPGQ 955
+ G IL+KD+L +W ++ W+NDRG+D +EG+ FVYGN+R VPYK+ RV V L WTLG E+RT E Y EK+SA+ V G+
Sbjct: 155 IPGKRILIKDELSLWEEEFWINDRGYDPDAIVKEGHTANDDSEGLPFVYGNRRLVPYKLARVSRMSTTCGGGVNLIRSVVNSELEWTLGDEYRTAELYQEKLSAVDVAFGK 265
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S4HD69_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HD69_9EUKA) HSP 1 Score: 71.2 bits (173), Expect = 2.460e-11 Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 2
Query: 722 GLEILVKDDLRVWSDQLWVNDRGFDREGNFVYGNQRSVPYKMRR 853
G+ I+V+DD+ +WSD LWVNDRG D EGN++YGN R VPYKM R
Sbjct: 92 GMPIVVRDDVTLWSDALWVNDRGADMEGNYLYGNVRDVPYKMDR 135
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7R9ZKH3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKH3_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.450e-10 Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 2
Query: 701 VQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREGN-FVYGNQRSVPYKMRRV-------------------------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
V+SQ + G +I + D L ++ D ++NDRGF+ E N ++YGNQRSVPY++ RV V +LAWTLG HRT E Y K+ IG
Sbjct: 252 VESQMMPGQKIKILDQLSLYDDVFYINDRGFNPETNEYIYGNQRSVPYRLERVAKWKGGDADEDNDADDSVVTMVGRDVVNESLAWTLGDAHRTPEEYKSKIDEIG 357
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S4N064_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N064_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.670e-10 Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 2
Query: 686 DSGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGF----DR--------EGNFVYGNQRSVPYKMRRV----------------------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
+ G V S G + V+D+L +W D+LW+NDRGF DR E ++VYGN+R VPY M R V ALAWT+G+ R ++ Y E+M A+G
Sbjct: 238 NDGAVVPSVMKPGTYLRVRDELSLWEDELWINDRGFAPECDRTDDPGNIGEDDWVYGNRRGVPYAMERAARFSTVDGDGGDDDDDAVFAREVVDAALAWTMGSSWRDEDEYCERMEAVG 356 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14519.1 >prot_C-linearis_contig7.14519.1 ID=prot_C-linearis_contig7.14519.1|Name=mRNA_C-linearis_contig7.14519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=239bp MRLWRLLPPVETRLRAAGYDLTFFDWRGAEANEPLAAAGGGGVAATSCGDback to top mRNA from alignment at C-linearis_contig7:2825922..2827143+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14519.1 ID=mRNA_C-linearis_contig7.14519.1|Name=mRNA_C-linearis_contig7.14519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1222bp|location=Sequence derived from alignment at C-linearis_contig7:2825922..2827143+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:2825922..2827143+ >mRNA_C-linearis_contig7.14519.1 ID=mRNA_C-linearis_contig7.14519.1|Name=mRNA_C-linearis_contig7.14519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at C-linearis_contig7:2825922..2827143+ (Chordaria linearis ClinC8C monoicous)back to top |