mRNA_C-linearis_contig7.14519.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14519.1
Unique NamemRNA_C-linearis_contig7.14519.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.020e-75
Identity = 141/260 (54.23%), Postives = 165/260 (63.46%), Query Frame = 2
Query:  215 YCFCSVFARQPRTPGARGDVVMRLWRLLPPVETRLRAAGYDLTFFDWRGAEANEPLAAAGGGGVAATSC------GDAVAEHILGCEIYWSRHGDDVRRGGEEAARTHAGGGRATREEEGSESIGVDGTCSCGSGDIAAVGALSSPAAVSPEGASFVGLMGEDDSGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREGNFVYGNQRSVPYKMRRVVAPGALAWTLGAEHRTKEAYAEKMSAIGVVPGQRMGPPVR 976
            Y   S  A  P TPGARG+ VMRLWRLLP VE RLRA  YDLT F W   ++N+   + G    +   C      G+ V E + GCEIYW RH    + GGE+      G     +++    ++        G+G+ AA G           G SFVGLMG+DDSGTWV+SQNV GLEILVKDDLR+W D LWVNDRGFDR+GNFVYGNQR VPYKMRRV A G L WTLGA HRT++ YAEKMSAIGV  GQR+ PPVR
Sbjct:  167 YRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDLTSFSWSDDDSNQREPSRGSDNASNDRCSKEGRTGNDVVERMFGCEIYWGRH----QAGGEDEKSMPGGISGPGKQDANGGAVPER-----GAGEDAAGGG----------GKSFVGLMGKDDSGTWVESQNVDGLEILVKDDLRLWPDSLWVNDRGFDRDGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAEKMSAIGVTLGQRLRPPVR 407          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: D7G1T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T3_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 4.270e-56
Identity = 89/108 (82.41%), Postives = 97/108 (89.81%), Query Frame = 2
Query:  653 GASFVGLMGEDDSGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREGNFVYGNQRSVPYKMRRVVAPGALAWTLGAEHRTKEAYAEKMSAIGVVPGQRMGPPVR 976
            G SFVGLMGEDDSGTWV+SQNV GLEILVKDDLR+W D+LWVNDRGFDR+GNFVYGNQR VPYKMRRV A G L WTLGA HRT++ YAE+MSAIGV PGQR+GPPVR
Sbjct:   32 GKSFVGLMGEDDSGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAERMSAIGVTPGQRLGPPVR 139          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC)

HSP 1 Score: 86.3 bits (212), Expect = 3.530e-15
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  701 VQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREG-NFVYGNQRSVPYKMRRV----------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
            V+SQ + G +IL+KD L +W D+LW++DRGFD +   F+YGNQR VPY++ RV          +    LAWTLG + R++  Y +KM A+G
Sbjct:  218 VESQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLERVTDIALNNGRTIVQEDLAWTLGPDFRSEGEYQDKMVAVG 308          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S2A9U5_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9U5_TRICV)

HSP 1 Score: 84.0 bits (206), Expect = 3.640e-15
Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  701 VQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREG-NFVYGNQRSVPYKMRRV----------------------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
            V S  + G +I V+D+L +W   LW+NDRG+D EG +FVYGNQR VPY+M RV                      V  G L WTLG  HRT+  Y E++ AIG
Sbjct:   92 VPSLMIPGAKIRVRDELSLWDGALWINDRGYDPEGGDFVYGNQRGVPYEMGRVTTFLRGDGDGEGSPPLFATERTVVNGDLKWTLGPRHRTEGLYRERVEAIG 194          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S2SCY1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCY1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.610e-14
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  689 SGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREG--NFVYGNQRSVPYKMRRV--------------VAPGALAWTLGAEHRTKEAYAEKMSAI 937
            +GT V SQ + G+ I ++D+L +W ++ W+NDRG D +   +F+YGNQR +PYK++RV              +    LAWTLG +HRT+  Y + M+ I
Sbjct:  156 NGTTVASQVIPGMYINIRDELSLWKNEFWINDRGLDPQNVSSFIYGNQRGIPYKLKRVTQNNNIFRQWKPRMIHDPKLAWTLGPDHRTEFDYQQMMNEI 254          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 1.960e-13
Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  659 SFVGLMGEDDSGTWVQSQN-VAGLEILVKDDLRVWSDQLWVNDRGFDREGN-----------FVYGNQRSVPYKMRRV------------VAP--GALAWTLGAEHRTKEAYAEKMSAI 937
            SF   M    SG  V S + + G  IL+KD+L +W D+ W+NDRG+D +G            FVYGN+R VPYK+ RV            VAP  G L WTLG  +RT   Y  K+ AI
Sbjct:  271 SFHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYDPDGETDSMNENQDMPFVYGNRRGVPYKLERVSHIVSTAGAELQVAPVSGELQWTLGGSYRTPGEYEAKLKAI 389          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: B8BPX0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPX0_THAPS)

HSP 1 Score: 80.1 bits (196), Expect = 2.460e-13
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  716 VAGLEILVKDDLRVWSDQLWVNDRGFD-----REGN----------FVYGNQRSVPYKMRRV----------------VAPGALAWTLGAEHRTKEAYAEKMSAIGVVPGQ 955
            + G  IL+KD+L +W ++ W+NDRG+D     +EG+          FVYGN+R VPYK+ RV                V    L WTLG E+RT E Y EK+SA+ V  G+
Sbjct:  155 IPGKRILIKDELSLWEEEFWINDRGYDPDAIVKEGHTANDDSEGLPFVYGNRRLVPYKLARVSRMSTTCGGGVNLIRSVVNSELEWTLGDEYRTAELYQEKLSAVDVAFGK 265          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S4HD69_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HD69_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 2.460e-11
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 2
Query:  722 GLEILVKDDLRVWSDQLWVNDRGFDREGNFVYGNQRSVPYKMRR 853
            G+ I+V+DD+ +WSD LWVNDRG D EGN++YGN R VPYKM R
Sbjct:   92 GMPIVVRDDVTLWSDALWVNDRGADMEGNYLYGNVRDVPYKMDR 135          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7R9ZKH3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKH3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.450e-10
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  701 VQSQNVAGLEILVKDDLRVWSDQLWVNDRGFDREGN-FVYGNQRSVPYKMRRV-------------------------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
            V+SQ + G +I + D L ++ D  ++NDRGF+ E N ++YGNQRSVPY++ RV                         V   +LAWTLG  HRT E Y  K+  IG
Sbjct:  252 VESQMMPGQKIKILDQLSLYDDVFYINDRGFNPETNEYIYGNQRSVPYRLERVAKWKGGDADEDNDADDSVVTMVGRDVVNESLAWTLGDAHRTPEEYKSKIDEIG 357          
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Match: A0A7S4N064_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N064_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.670e-10
Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 2
Query:  686 DSGTWVQSQNVAGLEILVKDDLRVWSDQLWVNDRGF----DR--------EGNFVYGNQRSVPYKMRRV----------------------VAPGALAWTLGAEHRTKEAYAEKMSAIG 940
            + G  V S    G  + V+D+L +W D+LW+NDRGF    DR        E ++VYGN+R VPY M R                       V   ALAWT+G+  R ++ Y E+M A+G
Sbjct:  238 NDGAVVPSVMKPGTYLRVRDELSLWEDELWINDRGFAPECDRTDDPGNIGEDDWVYGNRRGVPYAMERAARFSTVDGDGGDDDDDAVFAREVVDAALAWTMGSSWRDEDEYCERMEAVG 356          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5K9Q8_9PHAE1.020e-7554.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T3_ECTSI4.270e-5682.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B7G7Q1_PHATC3.530e-1545.05Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2A9U5_TRICV3.640e-1543.69Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S2SCY1_9STRA2.610e-1439.39Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K0TER5_THAOC1.960e-1341.18Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BPX0_THAPS2.460e-1339.64Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4HD69_9EUKA2.460e-1165.91Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7R9ZKH3_9STRA1.450e-1038.68Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4N064_9STRA2.670e-1035.29Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2825922..2827143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue6.2e-46
Seed eggNOG ortholog2880.D7G1T3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CpeT/CpcT family (DUF1001)
EggNOG OGs2CBDP@1,2SAUK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004240.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1222
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14519.1prot_C-linearis_contig7.14519.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2826199..2826915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930314.4903011-UTR-C-linearis_contig7:2825921..28261981622930314.4903011-UTR-C-linearis_contig7:2825921..2826198Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2825922..2826198 +
1690881007.547591-UTR-C-linearis_contig7:2825921..28261981690881007.547591-UTR-C-linearis_contig7:2825921..2826198Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2825922..2826198 +
1622930314.526454-UTR-C-linearis_contig7:2826915..28271431622930314.526454-UTR-C-linearis_contig7:2826915..2827143Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2826916..2827143 +
1690881007.5692475-UTR-C-linearis_contig7:2826915..28271431690881007.5692475-UTR-C-linearis_contig7:2826915..2827143Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2826916..2827143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930314.511409-CDS-C-linearis_contig7:2826198..28269151622930314.511409-CDS-C-linearis_contig7:2826198..2826915Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2826199..2826915 +
1690881007.559169-CDS-C-linearis_contig7:2826198..28269151690881007.559169-CDS-C-linearis_contig7:2826198..2826915Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2826199..2826915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14519.1

>prot_C-linearis_contig7.14519.1 ID=prot_C-linearis_contig7.14519.1|Name=mRNA_C-linearis_contig7.14519.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=239bp
MRLWRLLPPVETRLRAAGYDLTFFDWRGAEANEPLAAAGGGGVAATSCGD
AVAEHILGCEIYWSRHGDDVRRGGEEAARTHAGGGRATREEEGSESIGVD
GTCSCGSGDIAAVGALSSPAAVSPEGASFVGLMGEDDSGTWVQSQNVAGL
EILVKDDLRVWSDQLWVNDRGFDREGNFVYGNQRSVPYKMRRVVAPGALA
WTLGAEHRTKEAYAEKMSAIGVVPGQRMGPPVRPPAAK*
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mRNA from alignment at C-linearis_contig7:2825922..2827143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14519.1 ID=mRNA_C-linearis_contig7.14519.1|Name=mRNA_C-linearis_contig7.14519.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1222bp|location=Sequence derived from alignment at C-linearis_contig7:2825922..2827143+ (Chordaria linearis ClinC8C monoicous)
GTGAGTTCGTATTAGGATGGGCGCGTGCTGCTACTGGAGGGGCACGACGG GTGGCACATGTTGGGCGTGCTTTTGTTTTCGCGTGGCAGCCTCGTCTCTT GAGTTACACTGCATCAGGTATGGTTTGTACACAGCGGCAGCAGTATCGTT AGATCTGACTACTTATCATATCCTACAAGTACATGCCGTGCATACTACTC TACCTCTCCCATGATACTGTTTTTGTTCTGTTTTTGCACGACAGCCACGC ACGCCGGGGGCGAGGGGCGACGTGGTGATGCGACTCTGGAGACTCCTACC CCCCGTCGAAACCCGCCTCAGGGCGGCCGGCTACGACCTGACGTTTTTCG ACTGGCGCGGGGCCGAGGCTAACGAACCGCTCGCGGCGGCCGGGGGGGGG GGGGTCGCCGCGACATCATGCGGCGATGCCGTCGCGGAGCACATCCTCGG GTGCGAGATCTACTGGAGTCGGCACGGCGATGACGTCCGCCGCGGCGGAG AAGAAGCGGCACGCACGCATGCCGGAGGCGGGCGAGCGACACGGGAAGAG GAGGGGAGTGAAAGCATCGGCGTGGATGGCACGTGTAGTTGTGGCAGTGG CGACATAGCAGCGGTAGGAGCACTTTCATCTCCCGCGGCGGTGTCACCCG AGGGGGCATCGTTCGTGGGGCTGATGGGGGAGGACGACAGCGGAACCTGG GTCCAGTCCCAAAACGTCGCGGGCCTCGAGATCCTCGTGAAGGACGATCT CCGGGTGTGGTCGGACCAGCTGTGGGTCAACGACCGCGGCTTCGACCGCG AGGGGAACTTCGTGTACGGCAACCAGCGCAGCGTGCCCTACAAGATGCGC AGGGTCGTTGCCCCGGGGGCCCTGGCGTGGACGCTCGGGGCGGAGCACCG CACGAAGGAGGCGTACGCAGAGAAGATGTCCGCCATCGGGGTGGTTCCGG GGCAAAGGATGGGGCCGCCTGTACGGCCACCGGCGGCGAAATAGTGTGCA CGGGGCCGGCGCGGACGGGTAGGTGTAGCGTTTGCGCGGCTGTTATTGGT CGTTCTTCCAGCTATTTTATGGGTATGGGCTTGGTTGGACGTTGGTTTGA AGAGTCATGCGTGTTCCTGCTCTAACCTCTAGCGTGAAATTGCTCCCCCC CTCGGCATCATGCAATGACGGAAGGGGTTCAAAGCCGTTCAGCGATAATC GCGCGCTTTTCGGGTTGATTTG
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Coding sequence (CDS) from alignment at C-linearis_contig7:2825922..2827143+

>mRNA_C-linearis_contig7.14519.1 ID=mRNA_C-linearis_contig7.14519.1|Name=mRNA_C-linearis_contig7.14519.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at C-linearis_contig7:2825922..2827143+ (Chordaria linearis ClinC8C monoicous)
ATGCGACTCTGGAGACTCCTACCCCCCGTCGAAACCCGCCTCAGGGCGGC
CGGCTACGACCTGACGTTTTTCGACTGGCGCGGGGCCGAGGCTAACGAAC
CGCTCGCGGCGGCCGGGGGGGGGGGGGTCGCCGCGACATCATGCGGCGAT
GCCGTCGCGGAGCACATCCTCGGGTGCGAGATCTACTGGAGTCGGCACGG
CGATGACGTCCGCCGCGGCGGAGAAGAAGCGGCACGCACGCATGCCGGAG
GCGGGCGAGCGACACGGGAAGAGGAGGGGAGTGAAAGCATCGGCGTGGAT
GGCACGTGTAGTTGTGGCAGTGGCGACATAGCAGCGGTAGGAGCACTTTC
ATCTCCCGCGGCGGTGTCACCCGAGGGGGCATCGTTCGTGGGGCTGATGG
GGGAGGACGACAGCGGAACCTGGGTCCAGTCCCAAAACGTCGCGGGCCTC
GAGATCCTCGTGAAGGACGATCTCCGGGTGTGGTCGGACCAGCTGTGGGT
CAACGACCGCGGCTTCGACCGCGAGGGGAACTTCGTGTACGGCAACCAGC
GCAGCGTGCCCTACAAGATGCGCAGGGTCGTTGCCCCGGGGGCCCTGGCG
TGGACGCTCGGGGCGGAGCACCGCACGAAGGAGGCGTACGCAGAGAAGAT
GTCCGCCATCGGGGTGGTTCCGGGGCAAAGGATGGGGCCGCCTGTACGGC
CACCGGCGGCGAAATAGATGCGACTCTGGAGACTCCTACCCCCCGTCGAA
ACCCGCCTCAGGGCGGCCGGCTACGACCTGACGTTTTTCGACTGGCGCGG
GGCCGAGGCTAACGAACCGCTCGCGGCGGCCGGGGGGGGGGGGGTCGCCG
CGACATCATGCGGCGATGCCGTCGCGGAGCACATCCTCGGGTGCGAGATC
TACTGGAGTCGGCACGGCGATGACGTCCGCCGCGGCGGAGAAGAAGCGGC
ACGCACGCATGCCGGAGGCGGGCGAGCGACACGGGAAGAGGAGGGGAGTG
AAAGCATCGGCGTGGATGGCACGTGTAGTTGTGGCAGTGGCGACATAGCA
GCGGTAGGAGCACTTTCATCTCCCGCGGCGGTGTCACCCGAGGGGGCATC
GTTCGTGGGGCTGATGGGGGAGGACGACAGCGGAACCTGGGTCCAGTCCC
AAAACGTCGCGGGCCTCGAGATCCTCGTGAAGGACGATCTCCGGGTGTGG
TCGGACCAGCTGTGGGTCAACGACCGCGGCTTCGACCGCGAGGGGAACTT
CGTGTACGGCAACCAGCGCAGCGTGCCCTACAAGATGCGCAGGGTCGTTG
CCCCGGGGGCCCTGGCGTGGACGCTCGGGGCGGAGCACCGCACGAAGGAG
GCGTACGCAGAGAAGATGTCCGCCATCGGGGTGGTTCCGGGGCAAAGGAT
GGGGCCGCCTGTACGGCCACCGGCGGCGAAATAG
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