mRNA_C-linearis_contig7.14518.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14518.1
Unique NamemRNA_C-linearis_contig7.14518.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 4.400e-49
Identity = 109/170 (64.12%), Postives = 122/170 (71.76%), Query Frame = 3 
Query:   48 LLLLRALPVTGLLGSWSALGSRLSQRVQRPCTGASPATSGADVQNKRP-EALLDDLLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPLDPSLVPEQVAAAGXXXXXXXXGDRDGEEGAXXXXXXGGLD---RPLQVVAAKYYFNGDSNVVFRYRLYSFHLCP 545
            LLLL+ +P  GLL SW+A  SRLSQ+VQR CT     T G  +    P +A++ +LL+LF+GEFDNY QV+ DRKAGM  GPGGGHEHIHCSLK LDP+ VP QVAA  XXXXXXXX         XXXXXX       RPL VVAAKYYFNGDSNVVFRYRLYSFH CP
Sbjct:    7 LLLLQVVPSAGLLVSWTASRSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKQLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLAVVAAKYYFNGDSNVVFRYRLYSFHACP 176
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: D7G1T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T2_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 6.830e-47
Identity = 103/171 (60.23%), Postives = 116/171 (67.84%), Query Frame = 3 
Query:   48 LLLLRALPVTGLLGSWSALGSRLSQRVQRPCTGASPATSGADVQNKRP-EALLDDLLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPLDPSLVPEQVAAAGXXXXXXXXGDRDGEEGAXXXXXXGGLDRPLQVVA----AKYYFNGDSNVVFRYRLYSFHLCP 545
            LLLL+ +P  GLL SW+A  SRLSQ+VQR CT     T G  +    P +A++ +LL+LF+GEFDNY QV+ DRKAGM  GPGGGHEHIHCSLK LDP+ VPEQVA   XXXXXXXX         XXXXXX               AKYYFNGDSNVVFRYRLYSFH CP
Sbjct:    7 LLLLQVVPSAGLLVSWTAARSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPEQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKYYFNGDSNVVFRYRLYSFHACP 177
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: A0A7S3LBP4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBP4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.500e-12
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 3 
Query:  117 SQRVQRPCTGASPATSGADVQNKRPEALLDDLLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPL 332
            + R +   T +SP +S  D  + + + L ++LL  F+G+FDNY QV++DRK G+    GGGHEHIHCSL P+
Sbjct:   33 ANRNEAVVTVSSPTSSSHDEGSSKAD-LWEELLSRFQGDFDNYNQVVQDRKEGLLPREGGGHEHIHCSLVPV 103
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: A0A1E7FNR9_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNR9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.470e-10
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 3 
Query:   87 GSWSALGSRLSQRVQRPCTGASPATSGADVQNKRPEALLDDLL-ELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPLDPS 341
            G  SA+     + V  PC   S      D   +     +  +L E F+G+FDNY QV+EDRK G+    GGGHEH HC+L P+  S
Sbjct:   54 GRHSAVTGTFQEMVVEPCESTSSVDGVGDGDGESSHEKVTKILSEWFQGDFDNYAQVVEDRKNGLLPREGGGHEHFHCTLVPVTES 139
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: A0A7S2PZJ6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZJ6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.810e-10
Identity = 45/136 (33.09%), Postives = 61/136 (44.85%), Query Frame = 3 
Query:  120 QRVQRPCTGASPATSGADVQNKRPEALLDDLLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPLDPSLVPEQVAAAGXXXXXXXXGDRDGEEGAXXXXXXGGLDRPLQVVAAKYYFNGDSNVVFRYRLY 527
            +R+   C   S ATS  D  N         LL  F+G+FDNY QVI DR   +A   GGGHEHIHC+L P   + V ++               R   +               Q + A +YFNG+   +FR+R+Y
Sbjct:   39 KRINVECFQTSDATSD-DSDN-----YFHHLLSQFQGDFDNYHQVIRDRNHALAPADGGGHEHIHCTLVPCPHTAVTQE--------------QRQNND---------------QWILAAFYFNGNPRQIFRFRMY 139
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC)

HSP 1 Score: 65.5 bits (158), Expect = 2.250e-9
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 3 
Query:  147 ASPATSGADVQNKRPEALLDDLLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPL 332
            AS   S +D       ++   LL+ F+G+FDNY QVI DRK G+    GGGHEHIHCSL P+
Sbjct:   45 ASNTNSASDHVGNLDASVWKALLDRFQGDFDNYNQVIHDRKKGLLPREGGGHEHIHCSLVPV 106
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC)

HSP 1 Score: 63.9 bits (154), Expect = 9.900e-9
Identity = 39/106 (36.79%), Postives = 51/106 (48.11%), Query Frame = 3 
Query:  210 LLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPLDPSLVPEQVAAAGXXXXXXXXGDRDGEEGAXXXXXXGGLDRPLQVVAAKYYFNGDSNVVFRYRLY 527
            L   F+G+FDNY QV+ DR+ G+  G GGGHEHIHC+L P                      GD D E          G  R  + + A +YFNG+   +FR+R Y
Sbjct:   80 LTSTFQGDFDNYNQVVLDRQHGLTPGAGGGHEHIHCTLVPCP------------------DFGD-DAE----------GDTRRSRWILAAFYFNGNPQQIFRFRAY 156
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: A0A7S1ZWM5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWM5_TRICV)

HSP 1 Score: 62.4 bits (150), Expect = 3.410e-8
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 3 
Query:  210 LLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPLDPSLV 347
            LL  F+G+FDNY QV  D   G+    GGGHEHIHCSL P+D SLV
Sbjct:   38 LLRRFQGDFDNYVQVRRDHAGGLTPREGGGHEHIHCSLVPVDASLV 83
[Close]
BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: A0A7S3DS98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DS98_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.260e-8
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:  186 RPEALLDDLLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPL 332
            + + L  D+LE F+G+FDNY QV+ DR+ G     GGGHE+IHC+L P+
Sbjct:   91 KKDQLWADMLERFQGDFDNYNQVVVDRENGKLPREGGGHENIHCTLVPV 139
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BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Match: A0A7S4AFR0_9STRA (Hypothetical protein n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFR0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.710e-7
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 3 
Query:  210 LLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLKPLDPS 341
            L E F G+FDNY QV+EDRK  +    GGGHEH HC+L PL  S
Sbjct:   30 LSECFRGDFDNYAQVLEDRKQNLEPREGGGHEHFHCTLVPLTES 73
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K9Q8_9PHAE4.400e-4964.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T2_ECTSI6.830e-4760.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3LBP4_9STRA2.500e-1245.83Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1E7FNR9_9STRA6.470e-1039.53Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2PZJ6_9STRA8.810e-1033.09Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B7G7Q1_PHATC2.250e-950.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0TER5_THAOC9.900e-936.79Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1ZWM5_TRICV3.410e-860.87Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3DS98_9STRA8.260e-851.02Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4AFR0_9STRA2.710e-759.09Hypothetical protein n=4 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2824370..2825882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue2.8e-08
Seed eggNOG ortholog159749.K0TER5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.CpeT/CpcT family (DUF1001)
EggNOG OGs2CBDP@1,2SAUK@2759,2XDKJ@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004250.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons3
Model size545
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14518.1prot_C-linearis_contig7.14518.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2824396..2825882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930314.363803-UTR-C-linearis_contig7:2824369..28243951622930314.363803-UTR-C-linearis_contig7:2824369..2824395Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2824370..2824395 +
1690881007.5042956-UTR-C-linearis_contig7:2824369..28243951690881007.5042956-UTR-C-linearis_contig7:2824369..2824395Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2824370..2824395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930314.384718-CDS-C-linearis_contig7:2824395..28244941622930314.384718-CDS-C-linearis_contig7:2824395..2824494Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2824396..2824494 +
1690881007.5179443-CDS-C-linearis_contig7:2824395..28244941690881007.5179443-CDS-C-linearis_contig7:2824395..2824494Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2824396..2824494 +
1622930314.4056182-CDS-C-linearis_contig7:2825119..28252451622930314.4056182-CDS-C-linearis_contig7:2825119..2825245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2825120..2825245 +
1690881007.528857-CDS-C-linearis_contig7:2825119..28252451690881007.528857-CDS-C-linearis_contig7:2825119..2825245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2825120..2825245 +
1622930314.4204347-CDS-C-linearis_contig7:2825588..28258821622930314.4204347-CDS-C-linearis_contig7:2825588..2825882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2825589..2825882 +
1690881007.5377367-CDS-C-linearis_contig7:2825588..28258821690881007.5377367-CDS-C-linearis_contig7:2825588..2825882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2825589..2825882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14518.1

>prot_C-linearis_contig7.14518.1 ID=prot_C-linearis_contig7.14518.1|Name=mRNA_C-linearis_contig7.14518.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
MLSRGAMLLLLRALPVTGLLGSWSALGSRLSQRVQRPCTGASPATSGADV
QNKRPEALLDDLLELFEGEFDNYGQVIEDRKAGMAAGPGGGHEHIHCSLK
PLDPSLVPEQVAAAGGGGAASSSGDRDGEEGAGAGVGVGGLDRPLQVVAA
KYYFNGDSNVVFRYRLYSFHLCP
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mRNA from alignment at C-linearis_contig7:2824370..2825882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14518.1 ID=mRNA_C-linearis_contig7.14518.1|Name=mRNA_C-linearis_contig7.14518.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1513bp|location=Sequence derived from alignment at C-linearis_contig7:2824370..2825882+ (Chordaria linearis ClinC8C monoicous)
GGGTTGTCGGCGCGATAACACATGTCATGTTGTCTCGAGGCGCGATGCTG
CTGCTACTTCGAGCTCTCCCTGTGACAGGGTTGCTGGGATCATGGAGTGC
CTTGGGCTCTCGCTTATCCCAACGGGTGAGTAAGATTCTTGCGAAAGCCT
TGCCAACCTCTGGCCTGCCCGTCTCTGCGTGCGCTGCAGCGGCACTGTTG
CGTTCACGTTGCTGTAGTGCGGCACTGCTCTCTTATCAGCTCCTGTAGAA
TCGTGTGGAACACACATACTTTTGTTCCATCTCTGGCGATTCTCTCTTGT
TGCCGCCGTTGTCTTTCAGCTACGTAGTCAGCAAATCAATGGGCTGTGTA
GGTTACAGCAGGGTTTCGACATCAAGCTGCTGCCTCCGTGCGCAGGATAC
AGTAGTACTGCTGTAGCGGCACTGCTGTGACCTTGCTGTTTTTGATGCCT
TGATTATTGATTCAGAGTACGTTGTTGACCTGCAAAGTGTATTCGCTTTT
CTAACCGCTGGTTGTGTTCCCAGTACAAAAACGTTCCTCGACAGCGTGTG
TGTCGAGTGTATTGCCCACGTATTGCAAATGTGAAGCTCGGATGTATGAC
CTGTGTACGGTAGCTCAACACCAGAAAAAGAGCGCTCCGAAGGGTTTATG
GGGTAGCATTGCTGCAACCGAATATTCCGGAGAACATTACACCCTCTGTC
CTTCGGATGCCACAACCCTTCCACTGCTGTCTGACTGAAACATGAAACAG
GTGCAGCGACCGTGTACCGGCGCTAGCCCTGCAACATCCGGGGCCGACGT
TCAGAACAAGCGCCCCGAGGCACTCTTGGATGACTTGTTGGAGCTCTTCG
AAGGGGAATTTGACAACTACGGTCAGGTGAGAACACACGAAGTACAAATA
GCCTAGAAACGAAATCTTCGCCGGAAACGGCGCTCCTTCTTCTCACACTA
AACATCTAGAAGTACGTTCCTGGCCTGTTTAGAGTGTTCACGGCGCAATA
GCTCATCAATGGGCTTCGTGTTCCGCGAAAGAATGTGTCCGATTGGCGGA
GGATTAAGAAACACACATCCTCCAACGGATTTGTTTGTTTGTTCGTTCTT
GCCCTCTCCTTGAAGCGGCCACACAAGCACCCGCCCACCCACCCACCCAC
CCACCGCCGGGTGTGTATCTACCCTACCACCTACCTTCGGCGGGCTCGAT
CGGATTGATTTCTCCACAGGTGATAGAAGACCGCAAGGCCGGAATGGCCG
CCGGCCCGGGGGGCGGCCACGAGCACATCCACTGCAGCTTGAAACCCTTG
GACCCTTCTCTGGTGCCCGAGCAAGTCGCAGCGGCAGGCGGAGGCGGAGC
GGCGAGCTCGAGCGGGGACAGGGACGGGGAGGAGGGGGCGGGGGCGGGTG
TGGGGGTGGGGGGTCTAGACCGACCTCTGCAGGTGGTGGCGGCCAAGTAC
TACTTCAACGGGGACTCGAACGTGGTGTTCCGGTATCGGCTGTACAGCTT
CCATCTGTGCCCG
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Coding sequence (CDS) from alignment at C-linearis_contig7:2824370..2825882+

>mRNA_C-linearis_contig7.14518.1 ID=mRNA_C-linearis_contig7.14518.1|Name=mRNA_C-linearis_contig7.14518.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig7:2824370..2825882+ (Chordaria linearis ClinC8C monoicous)
ATGTTGTCTCGAGGCGCGATGCTGCTGCTACTTCGAGCTCTCCCTGTGAC
AGGGTTGCTGGGATCATGGAGTGCCTTGGGCTCTCGCTTATCCCAACGGA
TGTTGTCTCGAGGCGCGATGCTGCTGCTACTTCGAGCTCTCCCTGTGACA
GGGTTGCTGGGATCATGGAGTGCCTTGGGCTCTCGCTTATCCCAACGGGT
GCAGCGACCGTGTACCGGCGCTAGCCCTGCAACATCCGGGGCCGACGTTC
AGAACAAGCGCCCCGAGGCACTCTTGGATGACTTGTTGGAGCTCTTCGAA
GGGGAATTTGACAACTACGGTCAGGTGCAGCGACCGTGTACCGGCGCTAG
CCCTGCAACATCCGGGGCCGACGTTCAGAACAAGCGCCCCGAGGCACTCT
TGGATGACTTGTTGGAGCTCTTCGAAGGGGAATTTGACAACTACGGTCAG
GTGATAGAAGACCGCAAGGCCGGAATGGCCGCCGGCCCGGGGGGCGGCCA
CGAGCACATCCACTGCAGCTTGAAACCCTTGGACCCTTCTCTGGTGCCCG
AGCAAGTCGCAGCGGCAGGCGGAGGCGGAGCGGCGAGCTCGAGCGGGGAC
AGGGACGGGGAGGAGGGGGCGGGGGCGGGTGTGGGGGTGGGGGGTCTAGA
CCGACCTCTGCAGGTGGTGGCGGCCAAGTACTACTTCAACGGGGACTCGA
ACGTGGTGTTCCGGTATCGGCTGTACAGCTTCCATCTGTGCCCGGTGATA
GAAGACCGCAAGGCCGGAATGGCCGCCGGCCCGGGGGGCGGCCACGAGCA
CATCCACTGCAGCTTGAAACCCTTGGACCCTTCTCTGGTGCCCGAGCAAG
TCGCAGCGGCAGGCGGAGGCGGAGCGGCGAGCTCGAGCGGGGACAGGGAC
GGGGAGGAGGGGGCGGGGGCGGGTGTGGGGGTGGGGGGTCTAGACCGACC
TCTGCAGGTGGTGGCGGCCAAGTACTACTTCAACGGGGACTCGAACGTGG
TGTTCCGGTATCGGCTGTACAGCTTCCATCTGTGCCCG
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