mRNA_C-linearis_contig7.14514.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14514.1
Unique NamemRNA_C-linearis_contig7.14514.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2775589..2778496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1086
Cds size1086
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14514.1prot_C-linearis_contig7.14514.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2775589..2778496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930275.172648-CDS-C-linearis_contig7:2775588..27756381622930275.172648-CDS-C-linearis_contig7:2775588..2775638Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2775589..2775638 +
1690880987.9944315-CDS-C-linearis_contig7:2775588..27756381690880987.9944315-CDS-C-linearis_contig7:2775588..2775638Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2775589..2775638 +
1622930275.1965227-CDS-C-linearis_contig7:2776006..27763351622930275.1965227-CDS-C-linearis_contig7:2776006..2776335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2776007..2776335 +
1690880988.012859-CDS-C-linearis_contig7:2776006..27763351690880988.012859-CDS-C-linearis_contig7:2776006..2776335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2776007..2776335 +
1622930275.2121747-CDS-C-linearis_contig7:2776707..27768291622930275.2121747-CDS-C-linearis_contig7:2776707..2776829Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2776708..2776829 +
1690880988.0237894-CDS-C-linearis_contig7:2776707..27768291690880988.0237894-CDS-C-linearis_contig7:2776707..2776829Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2776708..2776829 +
1622930275.2276406-CDS-C-linearis_contig7:2777203..27773581622930275.2276406-CDS-C-linearis_contig7:2777203..2777358Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2777204..2777358 +
1690880988.0341744-CDS-C-linearis_contig7:2777203..27773581690880988.0341744-CDS-C-linearis_contig7:2777203..2777358Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2777204..2777358 +
1622930275.296761-CDS-C-linearis_contig7:2777666..27777571622930275.296761-CDS-C-linearis_contig7:2777666..2777757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2777667..2777757 +
1690880988.0436182-CDS-C-linearis_contig7:2777666..27777571690880988.0436182-CDS-C-linearis_contig7:2777666..2777757Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2777667..2777757 +
1622930275.3159788-CDS-C-linearis_contig7:2778157..27784961622930275.3159788-CDS-C-linearis_contig7:2778157..2778496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2778158..2778496 +
1690880988.0569158-CDS-C-linearis_contig7:2778157..27784961690880988.0569158-CDS-C-linearis_contig7:2778157..2778496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2778158..2778496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14514.1

>prot_C-linearis_contig7.14514.1 ID=prot_C-linearis_contig7.14514.1|Name=mRNA_C-linearis_contig7.14514.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=362bp
MGGRKLHTGGNTSENFTGMGSTQRRKFSCAATSATAIATASSNASKLPRR
SSAPASSSRLPRRQLVPTTTKTTAAPAASSIQPSPGGSRFPSPSERRLKG
SRRACQPAGRRRSSLKTDQVAARDGEESRSAPNFSTMVFDWSVDQVERWI
GETLELECCRAVFRANKIDGLRLGGLTQDHLMKDLGIKNAFHARKIDLHL
DRLLEDALGPHSHVQIPREVASWRNREFLAWCWQNVGVRHRPTLALLRQV
GIDGVVLLALEPVNWAHLVTTSPYPSCAAPLESIRRANVELLSPPGGSGS
REQNDGDRPSLKLQGDNVNVTYDVEGTIAKKTPDDYTNAVPEGSESHGTS
KAEQCTAASVAD
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mRNA from alignment at C-linearis_contig7:2775589..2778496+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14514.1 ID=mRNA_C-linearis_contig7.14514.1|Name=mRNA_C-linearis_contig7.14514.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2908bp|location=Sequence derived from alignment at C-linearis_contig7:2775589..2778496+ (Chordaria linearis ClinC8C monoicous)
ATGGGGGGGCGAAAACTGCATACGGGGGGGAATACTTCGGAGAATTTCAC
GTAAGACTGGAAGCGCCCTGGAATGCTATGTGATGATCTTTCTACCGTAG
CGAAGGGGCCTAAAAAAGATACGCCATCCAAACGGGAGTTCAGCGGGGAG
AAAAGGCGGGGGGTGAGATTACAGGGGAGTGTCAAGCGTAGTAGCAAGCT
TTGTTCGTTGAACTTGTAGATAACAGGCGAATATCCCTGAGCTCTTTGTG
TCAAATTTCAACCTGTAGATTCTTATGTTTCACGCTTCTGCGTACGACGC
CTGCTTCGGGGGACGATACCAAGGGTAGTCTCGTTTGTCCGCTTTGATTG
TCATGCGTCCATGACGACAACCCAAGGTTTTGCGTTTCGAACCCCGCCTG
TATGTTTCGCGGCTGTAGGGGCATGGGCAGCACACAGAGAAGGAAGTTTT
CTTGCGCTGCCACTTCCGCCACCGCCATCGCCACCGCCAGCAGCAACGCA
AGCAAACTCCCAAGAAGGTCGTCCGCGCCCGCCTCCTCCTCCCGCTTGCC
GCGACGACAGCTCGTCCCAACTACAACCAAAACCACTGCTGCTCCCGCCG
CAAGTTCAATACAACCAAGTCCCGGTGGAAGCAGGTTCCCGTCGCCAAGC
GAGCGGCGATTGAAAGGTTCTCGTCGCGCGTGCCAGCCGGCCGGTCGAAG
GAGAAGCTCTCTAAAGACTGACCAGGTTGCGGCACGGGATGGGGAAGGTG
AGCTGTTGTCCGCCGGGGGGGATGCAGGGGAGCACGGAAGAAAGGGGCCT
CGCGCGGGGGGGTCGGGTCCTGGCTCGCCGTCGACGAAAGGTGCTTATGA
CGTCGTACGGGGTAGACGGGAGGGAAACGCGTCTGGTCGGACGCACACAA
CCGCTAGCGAATGTTCGTCAGTCTTCGGAGCTCGCAGAGGCCAGCGTGAA
ATCGTCACACGGGAGTTCAGGTCGCGTAGAAAAGGTTGAAGAATCAGCCT
GCCGATATCCGTACGCTTCTTATAACGCCATCGCTCAGAGTTGTCAAACT
CGCTTTTTGAGACACCGAAATATTTTCGGTTTCACACTGCATCGTCGCTG
CTCCTCCATCCCCCCACAGAAAGTAGATCAGCACCCAATTTCTCCACCAT
GGTCTTCGACTGGAGCGTAGATCAGGTGGAGCGGTGGATCGGCGAGACGT
TGGAATTGGAGTGCTGTCGCGCAGTTTTCCGAGCTAACAAGGCGAGTGGC
AGCACGCGCATGTTGGGATGAGGGCGCAAGCTTGTGGTTTGATCGGTCAA
ATAAAATAAAATAAACGGATCCGCACCCCTCTTAATGGCGTTTCATCGTG
GTCGCCAGCACGCACAGCAACCTATTTGAAACCCTTGAAGGTTGTCGAGC
TGTGTTTCAACCGCTTTCCGTTGCAGAGCATGAAGGTGCGCTAAACACTG
CTGTAGTTCGTGAAATTGGAAGAAAAAAAAGAGACTGCCAACTCTGAAGA
GGGATCAAAGCCGTTGCGGGTGAAGCTTAATCCCCAAAAGAACACTACTG
TACGTGCAATATGACCCCTTGCGTTTCCGGAACTATTTCTGCGTTCCCGT
TCATATCATGCGCAGATCGATGGATTACGTCTCGGCGGACTAACTCAGGA
CCATCTCATGAAGGATCTCGGGATCAAGAACGCCTTCCACGCACGAAAAA
TTGACCTACACCTTGACCGTCTTTTGGAGGACGCTCTCGGTCCACACTCC
CATGTTCAGATTCCTCGAGAGTGAGTCATCTCAATCGCCTCTCAGTAATG
AACTGCCGTGCGTATCCGAACATACCGCCAGCTACCCCCACGCTCGTTGA
GTCCATTCCAAAAATCTACATGATGTAGCTGAGACTCGGATGTATAGTAT
GCAAGTTACGGATTGGCCCCCCATGAAAGCATGGCATTGCGGGAAAGCGT
GCCGAATTACTGGGAGATTCGATTCGTTGATCGAAGCATCTACGGTAGAG
TTTACTAACGCAAAAAAATGTCCCGCCCGTTCAAAACCTGGGCGATGCTC
TGGCCCCCCGACGGCTTCTGGCCCGCAGGGTCGCAAGTTGGCGAAATCGA
GAATTCCTTGCGTGGTGCTGGCAAAACGTCGGCGTTCGACACCGTCCTAC
TCTTGCTCTCTTGCGCCAGGTGAGAGAACAGATATTATGTCCCCAAGATG
CCGCAGCATGTTCGCCTTTTATGAAAGTTCACAATATTGTAGCGGCAGTG
CCGCCTAGAACAGGTTGCGCTGATAGAAGGTGAAAAGCTTCCCCGCTTAC
GATTAAACTCAAAAACCTGTCGACATGTTGACATACTCTCTGTTGCAGCC
CCCCAACCTAGCCTACAGAGCTGTTCAGCAACAACCCGGCGCAACCTGGC
GTGTTTCTTCCCTGGTTCTATGGGATGCGAGGTCAATAAGGTCTTACAAG
TACGATTTTCATGATACTTTCGCAAAGCCTGTTGCCCATCCCCGGGGCAA
AAACAGAAGTAAACGGTTGGGAATGAGCCTGTTTACCGTGTGCGGTGTTT
TGGTGCTCTTTCTGAGTAGGTGGGCATCGACGGCGTCGTGCTCCTAGCGT
TGGAGCCGGTCAACTGGGCACACTTGGTGACGACAAGCCCTTACCCGTCC
TGTGCCGCGCCGTTGGAGAGTATACGGCGAGCCAACGTGGAGCTTTTGTC
TCCGCCCGGCGGCAGCGGTTCGCGAGAACAAAACGACGGCGACCGGCCAA
GCTTAAAGCTCCAGGGCGACAACGTCAACGTGACATACGACGTTGAAGGT
ACCATCGCGAAGAAGACACCCGACGACTACACAAACGCGGTACCGGAAGG
GTCCGAGAGCCATGGCACCTCGAAAGCCGAACAATGCACAGCTGCTAGTG
TTGCCGAC
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Coding sequence (CDS) from alignment at C-linearis_contig7:2775589..2778496+

>mRNA_C-linearis_contig7.14514.1 ID=mRNA_C-linearis_contig7.14514.1|Name=mRNA_C-linearis_contig7.14514.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at C-linearis_contig7:2775589..2778496+ (Chordaria linearis ClinC8C monoicous)
ATGGGGGGGCGAAAACTGCATACGGGGGGGAATACTTCGGAGAATTTCAC
ATGGGGGGGCGAAAACTGCATACGGGGGGGAATACTTCGGAGAATTTCAC
GGGCATGGGCAGCACACAGAGAAGGAAGTTTTCTTGCGCTGCCACTTCCG
CCACCGCCATCGCCACCGCCAGCAGCAACGCAAGCAAACTCCCAAGAAGG
TCGTCCGCGCCCGCCTCCTCCTCCCGCTTGCCGCGACGACAGCTCGTCCC
AACTACAACCAAAACCACTGCTGCTCCCGCCGCAAGTTCAATACAACCAA
GTCCCGGTGGAAGCAGGTTCCCGTCGCCAAGCGAGCGGCGATTGAAAGGT
TCTCGTCGCGCGTGCCAGCCGGCCGGTCGAAGGAGAAGCTCTCTAAAGAC
TGACCAGGTTGCGGCACGGGATGGGGAAGGGGCATGGGCAGCACACAGAG
AAGGAAGTTTTCTTGCGCTGCCACTTCCGCCACCGCCATCGCCACCGCCA
GCAGCAACGCAAGCAAACTCCCAAGAAGGTCGTCCGCGCCCGCCTCCTCC
TCCCGCTTGCCGCGACGACAGCTCGTCCCAACTACAACCAAAACCACTGC
TGCTCCCGCCGCAAGTTCAATACAACCAAGTCCCGGTGGAAGCAGGTTCC
CGTCGCCAAGCGAGCGGCGATTGAAAGGTTCTCGTCGCGCGTGCCAGCCG
GCCGGTCGAAGGAGAAGCTCTCTAAAGACTGACCAGGTTGCGGCACGGGA
TGGGGAAGAAAGTAGATCAGCACCCAATTTCTCCACCATGGTCTTCGACT
GGAGCGTAGATCAGGTGGAGCGGTGGATCGGCGAGACGTTGGAATTGGAG
TGCTGTCGCGCAGTTTTCCGAGCTAACAAGAAAGTAGATCAGCACCCAAT
TTCTCCACCATGGTCTTCGACTGGAGCGTAGATCAGGTGGAGCGGTGGAT
CGGCGAGACGTTGGAATTGGAGTGCTGTCGCGCAGTTTTCCGAGCTAACA
AGATCGATGGATTACGTCTCGGCGGACTAACTCAGGACCATCTCATGAAG
GATCTCGGGATCAAGAACGCCTTCCACGCACGAAAAATTGACCTACACCT
TGACCGTCTTTTGGAGGACGCTCTCGGTCCACACTCCCATGTTCAGATTC
CTCGAGAATCGATGGATTACGTCTCGGCGGACTAACTCAGGACCATCTCA
TGAAGGATCTCGGGATCAAGAACGCCTTCCACGCACGAAAAATTGACCTA
CACCTTGACCGTCTTTTGGAGGACGCTCTCGGTCCACACTCCCATGTTCA
GATTCCTCGAGAGGTCGCAAGTTGGCGAAATCGAGAATTCCTTGCGTGGT
GCTGGCAAAACGTCGGCGTTCGACACCGTCCTACTCTTGCTCTCTTGCGC
CAGGGTCGCAAGTTGGCGAAATCGAGAATTCCTTGCGTGGTGCTGGCAAA
ACGTCGGCGTTCGACACCGTCCTACTCTTGCTCTCTTGCGCCAGGTGGGC
ATCGACGGCGTCGTGCTCCTAGCGTTGGAGCCGGTCAACTGGGCACACTT
GGTGACGACAAGCCCTTACCCGTCCTGTGCCGCGCCGTTGGAGAGTATAC
GGCGAGCCAACGTGGAGCTTTTGTCTCCGCCCGGCGGCAGCGGTTCGCGA
GAACAAAACGACGGCGACCGGCCAAGCTTAAAGCTCCAGGGCGACAACGT
CAACGTGACATACGACGTTGAAGGTACCATCGCGAAGAAGACACCCGACG
ACTACACAAACGCGGTACCGGAAGGGTCCGAGAGCCATGGCACCTCGAAA
GCCGAACAATGCACAGCTGCTAGTGTTGCCGACGTGGGCATCGACGGCGT
CGTGCTCCTAGCGTTGGAGCCGGTCAACTGGGCACACTTGGTGACGACAA
GCCCTTACCCGTCCTGTGCCGCGCCGTTGGAGAGTATACGGCGAGCCAAC
GTGGAGCTTTTGTCTCCGCCCGGCGGCAGCGGTTCGCGAGAACAAAACGA
CGGCGACCGGCCAAGCTTAAAGCTCCAGGGCGACAACGTCAACGTGACAT
ACGACGTTGAAGGTACCATCGCGAAGAAGACACCCGACGACTACACAAAC
GCGGTACCGGAAGGGTCCGAGAGCCATGGCACCTCGAAAGCCGAACAATG
CACAGCTGCTAGTGTTGCCGAC
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