mRNA_C-linearis_contig7.14497.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A6H5KIJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIJ3_9PHAE) HSP 1 Score: 433 bits (1113), Expect = 8.100e-144 Identity = 258/417 (61.87%), Postives = 282/417 (67.63%), Query Frame = 3
Query: 96 MQQQADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHDFRFTYGGDVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGD-------------GHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLRQEGKNERHHRESGHPPSSGEASNERSNQPLPEPAETAXXXXXXXXXXXXXXGHPRKE-QLVLPPQPQQGGPGSPS----------------------TFLLAFARRNVSIERVLREAEGLGLAWRVTDDFEPATASENIYLMSLR 1238
MQQQADEDELGLSS ALAALKEFALEN+MLG GD ++VDVRLQVQERMDVK+RTH+F FT+G D D+EQV IAL GVNPELGQTLASTGLTVWRAAQEMARFMWEHR+WF GK VVELGAGLGLCG+LASKLC GGTVVITDGGEEFT+SA+DALR NL KNSCNLL A PAR G G A A VALE+LTWGEHE FLER GGG+ G RGGFD++VAADVIYEEE VSPLL TVVDILRLR +GE S+ + P P+ A P+ E + PPQP+ GP S S TFLLAFARRN+SIERVL EAE LGLAWRV DDFEPA+ASENIYLMSLR
Sbjct: 1 MQQQADEDELGLSSAALAALKEFALENNMLG---GDDDVVDVRLQVQERMDVKKRTHEFSFTFGDDGDDEQVCIALAGVNPELGQTLASTGLTVWRAAQEMARFMWEHRRWFAGKRVVELGAGLGLCGILASKLCTGGTVVITDGGEEFTNSAMDALRANLIKNSCNLL--AHSPARNGSNAAVGCGGDAAAVGAAAAGRGARVALEKLTWGEHEAFLERN-GGGSDRTTDGVNDGDN-RGGFDFVVAADVIYEEEGVSPLLRTVVDILRLR-----------------AGERSDSKHPDHCPSPSHEAVA--------------PKDETEEQDPPQPESSGPASSSSLRCQASAPPALPSLVPAPTESTFLLAFARRNISIERVLGEAESLGLAWRVPDDFEPASASENIYLMSLR 379
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A836C7F5_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7F5_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.460e-51 Identity = 117/262 (44.66%), Postives = 149/262 (56.87%), Query Frame = 3
Query: 105 QADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHDFRFTYGGDVDEEQ------VFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLR 872
QADE+ELGLS L ALKEFA N L P D R VQ+ MD R +F F + D + Q V + L+GV+PELGQTLASTGLTVW AA+ +A +++ R +TV+ELGAGLGLCG+L +KL GG+VV+TDGG+EFTD AL AL +E+N A A+ERLTWG+H+ FL+ + R GFD ++AADVIYE EAV PLL TV +L+ +
Sbjct: 5 QADEEELGLSEDTLRALKEFASLNLGLDPNAAD-----FRRTVQDAMDTIPRNENFTFNFTSDAPQTQPGAGDAVTVELSGVSPELGQTLASTGLTVWTAARHLAHYLFHIRDQIAARTVIELGAGLGLCGILCAKL--GGSVVVTDGGDEFTDEALGALVEQVERN-----------------RSVTAAAFECAVERLTWGDHDAFLKAH------------------REGFDVVIAADVIYEAEAVVPLLSTVTALLQAK 224
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A662YF07_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF07_9STRA) HSP 1 Score: 137 bits (345), Expect = 9.190e-33 Identity = 113/380 (29.74%), Postives = 164/380 (43.16%), Query Frame = 3
Query: 105 QADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHDFRFTYG--GDVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLRQEGKNERHHRESGHPPSSGEASNERSNQPLPEPAETAXXXXXXXXXXXXXXGHPRKEQLVLPPQPQQGGPGSPSTFLLAFARRNVSIERVLREAEGLGLAWRVTDDFEPATASENIYLMSLR 1238
++D ++L LSS ALAAL+EFA+E + E E DVR+++Q+ +D++ + F F +G D ++ +V I L G+ ++GQTL STGLT+WRA ++ +M+ +R FVGK+VVELG+GLGLCG+LAS L VVITDG D ++ L N + N V +L WG + ++ FD ++ AD+IYE+E V L T +LR P T+ +GG + S FLLA+ +RNVSI+ VL A G W E T E +Y L+
Sbjct: 5 ESDGEQLTLSSAALAALQEFAIERGIAVEE----EATDVRMEIQKALDIEPKEDSFVFKFGKTDDAEDAEVTIRLNGLRRDIGQTLQSTGLTLWRAGDFLSDYMYANRATFVGKSVVELGSGLGLCGILASYLT-DKRVVITDGD----DDTVELLVANCKLND---------------------VADKVECRKLLWGVDLEQIQHK---------------------FDIVLGADIIYEQEHVVSLFQTAQYLLR----------------------------------PGHTSV----------------------------EGGGQAASVFLLAYTKRNVSIDYVLDTATSFGFEW------EEPTTDEGVYTYRLK 265
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A7S3MJ79_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MJ79_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.900e-32 Identity = 115/370 (31.08%), Postives = 152/370 (41.08%), Query Frame = 3
Query: 108 ADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHDFRFTYGGDVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCI---GGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLRQEGKNERHHRESGHPPSSGEASNERSNQPLPEPAETAXXXXXXXXXXXXXXGHPRKEQLVLPPQPQQGGPGSPSTFLLAFARRNVSIERVLREAEGLGLAWRVTDDFEPATA 1208
+D E+GLS L AL+EFAL N + +I++ V++ ++K+R F+ +Y E + L G+ ELGQTL STGLT+WRAA+ + +F+ ++ +F GKT+ ELGAGLGL VL KL GG++VITDG E L L N N C L WGE+EDFL Y F+ ++AADVIYE+ V PLL TV ILR E F+LAFARRNVSI++V R AE GL WR+ D+ A
Sbjct: 13 SDSGEVGLSEETLRALREFALGNGVFVD---SKKIIE---SVRDHFEIKDRDDIFKMSYASKDGERKTEFELKGIKKELGQTLDSTGLTIWRAAEHLCQFIIDNPPFFRGKTICELGAGLGLVAVLIEKLGYVESGGSLVITDGDEP----TLQLLIENKVDNECFF-----------------------ESSYLYWGENEDFLSSYPDK------------------FEVVIAADVIYEDCQVEPLLDTVAAILRPDGE-------------------------------------------------------------------------FILAFARRNVSIDKVHRAAEQRGLEWRIVDEHAEGVA 258
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A7R9UBL8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBL8_9STRA) HSP 1 Score: 137 bits (346), Expect = 4.590e-32 Identity = 108/268 (40.30%), Postives = 137/268 (51.12%), Query Frame = 3
Query: 105 QADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHD--FRFTYGGDVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVG----KTVVELGAGLGL----CGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEH----EDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILR 866
QA E+ELGLS+ ALAAL EFAL+N +L DS I R QVQ + E + F F YG V + + G +LGQTL+STGLTVW A+++A ++W HR K VVELGAGLGL CG + + GTV+ TDG D++L+ LR N+E N E + A L RL WG+ ++ LER G EDG D I+AADVIY+EEAV PL TV I+R
Sbjct: 12 QAPEEELGLSAAALAALAEFALDNGILAEADADSSI---RQQVQSHFEALEPEKEELFTFEYG------HVRLTMEGWRRDLGQTLSSTGLTVWSGAEDLAAYLWRHRAVLFPEKSQKVVVELGAGLGLPGILCGAIMALASDSGTVICTDGD----DNSLEKLRRNVEING-----------------ELLGAVQTEVL-RLRWGQDLRVLDEALERLHG----EDGRAV----------DLIIAADVIYQEEAVEPLFATVQQIMR 234
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: W7TPS1_9STRA (Nicotinamide N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPS1_9STRA) HSP 1 Score: 129 bits (325), Expect = 7.010e-30 Identity = 103/367 (28.07%), Postives = 146/367 (39.78%), Query Frame = 3
Query: 213 VDVRLQVQERMDVKERTHDFRFTYGG-----DVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGK-----TVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLRQEGKNERHHRESGHPPSSGEASNERSNQPLPEPAETAXXXXXXXXXXXXXXGHPRKEQLVLPPQPQQGGPGSPSTFLLAFARRNVSIERVLREAEGLGLAWRVTDDFEPATASENIYLMSLR*PRGGALMQTETSLD 1283
VDVR VQ+ V +R F + YG D + V + L G ELGQ L TGLT+WRA +++ R++WE+R + ++ELG GLGLCG++A++L G VV+TDG + N KN C VA L WGE++ + + + GFD ++AADVIYEE+A+ PLL TV LR Q+ + FLL++ARRNVSI+RVL A +GL V D F + E++Y M L+ G + ++ D
Sbjct: 28 VDVRKAVQDSCAVMDRDECFEYVYGAAREGTDKVHDCVRVRLHGWKKELGQQLECTGLTMWRAGEDLGRYLWENRAMLFKQGQGRQRILELGCGLGLCGLVAAQLNPKGVVVLTDGDALTMQKVCRNIDENSLKNRC-----------------------CVAARTLQWGENKKIISEF------------------KEGFDLVLAADVIYEEKAIGPLLSTVTATLRKGQD-----------------------------------------------------------------------ALFLLSYARRNVSIDRVLAAASSMGLTCEVDDKFSCSAEGEHVYRMRLQRKEEGIIQVAPSTAD 282
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A833WMX4_PHYIN (Lysine methyltransferase n=16 Tax=Phytophthora TaxID=4783 RepID=A0A833WMX4_PHYIN) HSP 1 Score: 129 bits (323), Expect = 8.900e-30 Identity = 112/379 (29.55%), Postives = 162/379 (42.74%), Query Frame = 3
Query: 105 QADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHDFRFTYG--GDVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLRQEGKNERHHRESGHPPSSGEASNERSNQPLPEPAETAXXXXXXXXXXXXXXGHPRKEQLVLPPQPQQGGPGSPSTFLLAFARRNVSIERVLREAEGLGLAWRVTDDFEPATASENIYLMSL 1235
+ DE++L LS ALAAL+EFA+E + + E DVRL +Q+ +D++ + F F +G GD ++ ++ I L G+ ++GQTL STGLT+WRA ++ +M++ R F GK+++ELG+GLGL G+LAS L VVITDG D ++ L N + N GD V +L WG +E FD ++ AD+IYE+E V L T +L+ P + + GG + S FLLA+ +RNVSI+ VL A+G G W E T E IY L
Sbjct: 6 EGDEEQLVLSGAALAALQEFAIERGI----AVEDESSDVRLDIQKALDIEPKEDSFEFKFGKNGDEEDAEITIRLNGLRRDIGQTLQSTGLTLWRAGDFLSEYMYQDRGRFAGKSIIELGSGLGLIGILASYLT-DKKVVITDGD----DDTIELLVANCKLNGV------------GD---------RVECRKLLWGVDLHQIEDK---------------------FDVVLGADIIYEQEHVVSLFKTAKYLLK-------------------------------------------------------PGRRSVG------NGGKAA-SEFLLAYTKRNVSIDYVLDTAKGFGFEW------EEPTNDEGIYTFRL 265
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A6G0XBL9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBL9_9STRA) HSP 1 Score: 126 bits (316), Expect = 5.840e-29 Identity = 90/254 (35.43%), Postives = 127/254 (50.00%), Query Frame = 3
Query: 105 QADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHDFRFTYGGDVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLN-LEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDIL 863
+ D D +GLS+ ALAAL+EFALE + + D E D+R QVQ ++ + ++ FTY D + I L G+ ++GQTL STGLT+WRA ++ FM+ R+ F K V+ELG+GLGLCG+LA L G V+ITDG +E ++ +LN L+ N C + L WGE+ +G FD ++ AD+IYE+E V PL T IL
Sbjct: 3 EQDLDGIGLSADALAALREFALERGINVGDDSDDESFDIRKQVQTALEEAKGPNEDTFTYKFGDD---IAIHLNGLRRDIGQTLNSTGLTLWRAGDFLSDFMFRERELFADKRVLELGSGLGLCGILAHHL--GAKVLITDGDKESMVLLVENCKLNGLDTNKC--------------------------CQELLWGEN--------------------LTPETQGTFDVLIGADIIYEKEYVQPLFATASHIL 205
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: G4YRN5_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YRN5_PHYSP) HSP 1 Score: 126 bits (316), Expect = 7.830e-29 Identity = 113/379 (29.82%), Postives = 164/379 (43.27%), Query Frame = 3
Query: 105 QADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHDFRFTYGGDVD--EEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLRQEGKNERHHRESGHPPSSGEASNERSNQPLPEPAETAXXXXXXXXXXXXXXGHPRKEQLVLPPQPQQGGPGSPSTFLLAFARRNVSIERVLREAEGLGLAWRVTDDFEPATASENIYLMSL 1235
++D ++L LS ALAAL+EFA+E + GDS VDVR +Q+ +DV+ R F F +G D + ++ I L G+ ++GQTL STGLT+WRA ++ FM+++R F GK+V+ELG+GLGL G+LAS L V+ITDG ++ + + +LN ++ V ++L WG D ++ FD I+ AD+IYE+E V L T +L+ R SG + GG + S FLLA+ +RNVSI+ VL A+ G W E T E IY L
Sbjct: 6 ESDGEQLMLSGAALAALQEFAIERGIAVE--GDS--VDVRKDIQKALDVEPREDSFEFKFGQTQDGADAEITIRLNGLRRDIGQTLQSTGLTLWRAGDFLSDFMYQNRGRFAGKSVIELGSGLGLIGILASYLT-DEQVLITDGDDDTIELLVANCKLNEVEDR-------------------------VQCQKLLWGVDLDKIQDK---------------------FDIILGADIIYEQEHVVSLFETAKYLLKPG---------RRSG----------------------------------------------------EDGGKAA-SEFLLAYTKRNVSIDYVLNTAKSFGFEW------EEPTNDEGIYTYRL 265
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Match: A0A067C4F4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4F4_SAPPC) HSP 1 Score: 124 bits (310), Expect = 3.500e-28 Identity = 91/261 (34.87%), Postives = 132/261 (50.57%), Query Frame = 3
Query: 96 MQQQADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMDVKERTHD--FRFTYGGDVDEEQVFIALTGVNPELGQTLASTGLTVWRAAQEMARFMWEHRKWFVGKTVVELGAGLGLCGVLASKLCIGGTVVITDGGEEFTDSALDALRLNLEKNSCNLLPPASPPAREGDGHEAVPATAAVALERLTWGEHEDFLERYAGGGAAEDGSGXXXXXRGRGGFDYIVAADVIYEEEAVSPLLHTVVDILRLR 872
M QQ +D++GLS+ ALAAL+EFA+E + G D + VDVR VQ ++ + +D F FT+G D++ I L G+ ++GQTL STGLT+WRA ++ FM+ H+ F GK V+E G+GLGLCG+LA KL G V+ITDG +E +D +LN G + V ++L WG +G +D ++ AD+IYE+ V+PL + L R
Sbjct: 1 MMQQ--DDDIGLSADALAALREFAMERGI--DVGDDDDDVDVRKGVQSALEEAKGPNDESFCFTFGDDIE-----IRLNGLRRDIGQTLNSTGLTLWRAGDFLSDFMFRHKSLFEGKRVLEFGSGLGLCGILAGKL--GADVLITDGDDESMPVLIDNCKLN--------------------GMDPT-----VCCKQLLWGTE--------------------LTPETKGCYDVLLGADIIYEKAYVAPLFASASHFLSRR 205 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14497.1 >prot_C-linearis_contig7.14497.1 ID=prot_C-linearis_contig7.14497.1|Name=mRNA_C-linearis_contig7.14497.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=382bp MQQQADEDELGLSSVALAALKEFALENDMLGPEGGDSEIVDVRLQVQERMback to top mRNA from alignment at C-linearis_contig7:2638737..2644098- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14497.1 ID=mRNA_C-linearis_contig7.14497.1|Name=mRNA_C-linearis_contig7.14497.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5362bp|location=Sequence derived from alignment at C-linearis_contig7:2638737..2644098- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:2638737..2644098- >mRNA_C-linearis_contig7.14497.1 ID=mRNA_C-linearis_contig7.14497.1|Name=mRNA_C-linearis_contig7.14497.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at C-linearis_contig7:2638737..2644098- (Chordaria linearis ClinC8C monoicous)back to top |