mRNA_C-linearis_contig7.14482.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14482.1
Unique NamemRNA_C-linearis_contig7.14482.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig7.14482.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.510e-34
Identity = 75/119 (63.03%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:   22 EEEEAGGVGSPASGGAGSRTPRV--LCSPRCLDELLDCLVEYRDEDGRPILYLNDEAESEAAAAGVDSGIGIGMLPMQDEWDEREMGNRRLARRRGAEDQAAAEIRLWGCETDAAGVPV 372
            E E AGG G     G G +  RV  LC+PRCLDELLD LVEYRD+DGRPILY ND   S  AA G     G G + +QDEWDEREM N R A  R AE QAAAEIRLWGCETDAAG P 
Sbjct:  854 EAEAAGGEGDSGGAGGGEKGARVAGLCNPRCLDELLDSLVEYRDDDGRPILYFNDNIASFKAAVG-GREAGGGDIRLQDEWDEREMANLRQAGSRQAEAQAAAEIRLWGCETDAAGAPT 971
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BLAST of mRNA_C-linearis_contig7.14482.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.910e-32
Identity = 71/119 (59.66%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:   22 EEEEAGGVGSPASGGAGSRTPRV--LCSPRCLDELLDCLVEYRDEDGRPILYLNDEAESEAAAAGVDSGIGIGMLPMQDEWDEREMGNRRLARRRGAEDQAAAEIRLWGCETDAAGVPV 372
            E E  GG       G+G +  RV  LC+PRCLDELLD LVEYRD+DGRPILY ND  +S  AA G    +    + +QDEWDEREM N R A  R AE QAAAEIRLWGCETDAAG P 
Sbjct:  822 EAEADGGEVDGGGAGSGEKGARVSGLCNPRCLDELLDSLVEYRDDDGRPILYFNDNIDSFKAAVGGREAVSDD-IRLQDEWDEREMANLRQAGSRQAETQAAAEIRLWGCETDAAGAPT 939
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA82_9PHAE1.510e-3463.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZC5_ECTSI2.910e-3259.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2468130..2468944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930307.549759-CDS-C-linearis_contig7:2468129..24683671622930307.549759-CDS-C-linearis_contig7:2468129..2468367Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2468130..2468367 -
1690881004.0633454-CDS-C-linearis_contig7:2468129..24683671690881004.0633454-CDS-C-linearis_contig7:2468129..2468367Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2468130..2468367 -
1622930307.5636325-CDS-C-linearis_contig7:2468786..24689441622930307.5636325-CDS-C-linearis_contig7:2468786..2468944Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2468787..2468944 -
1690881004.0754566-CDS-C-linearis_contig7:2468786..24689441690881004.0754566-CDS-C-linearis_contig7:2468786..2468944Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2468787..2468944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14482.1prot_C-linearis_contig7.14482.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2468130..2468944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14482.1

>prot_C-linearis_contig7.14482.1 ID=prot_C-linearis_contig7.14482.1|Name=mRNA_C-linearis_contig7.14482.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=132bp
ERRGDAKEEEEAGGVGSPASGGAGSRTPRVLCSPRCLDELLDCLVEYRDE
DGRPILYLNDEAESEAAAAGVDSGIGIGMLPMQDEWDEREMGNRRLARRR
GAEDQAAAEIRLWGCETDAAGVPVSGGEDGGD
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mRNA from alignment at C-linearis_contig7:2468130..2468944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14482.1 ID=mRNA_C-linearis_contig7.14482.1|Name=mRNA_C-linearis_contig7.14482.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=815bp|location=Sequence derived from alignment at C-linearis_contig7:2468130..2468944- (Chordaria linearis ClinC8C monoicous)
GAGCGAAGGGGAGACGCGAAGGAAGAAGAGGAGGCGGGGGGTGTCGGTAG
CCCCGCGAGCGGTGGGGCGGGGTCGAGGACCCCGCGCGTGCTGTGTAGTC
CTCGGTGCCTGGACGAGCTGCTGGATTGTCTGGTGGAGTACAGGGACGAA
GACGGCCGGTGGGTGTTTTCGCGTGTTTTCTGCGTGTGCTCTCGTGCTAC
GGCTGTTCGCGTGTGCGCGCCAAGCACGAGAATATGCATGTTCGTTCGCA
CACTCGGGTGTCAACCTTGCACATAGATAAGCGCAAGAACTCGCAAGGTG
TACCCTGATCTATCTCCCGCTCTTTGAACAAGGAATGCTAGAAAATGCTC
CCCCCCTGGCAGTTAAATGGCCGCGCCGCCAAAATCCCAAATCAGCCCCC
CCCGACCCCCCCCCCGTCTCTACCTCGACACATGGACATGACAGCCGGTA
TAGTCAATCGCTGAGGTTCCGCGATCCCTTGCCCCACAAGCACGCACCGT
GAAATACCCCCGATGTCCATTCCTTTCCGCTTTCCGACCACCCCGGTTCA
CCCTTCCCTGCGCACAACCTTGAACAGGCCTATCCTGTACTTGAACGACG
AGGCCGAGTCCGAGGCCGCTGCAGCAGGCGTCGACAGCGGCATCGGCATC
GGCATGTTACCGATGCAAGACGAATGGGACGAGCGGGAGATGGGCAACCG
CAGGCTGGCGCGACGGCGGGGGGCGGAGGACCAGGCGGCGGCGGAGATCC
GTCTCTGGGGGTGCGAAACGGACGCGGCGGGAGTGCCCGTGTCCGGTGGG
GAGGATGGCGGGGAC
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Coding sequence (CDS) from alignment at C-linearis_contig7:2468130..2468944-

>mRNA_C-linearis_contig7.14482.1 ID=mRNA_C-linearis_contig7.14482.1|Name=mRNA_C-linearis_contig7.14482.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at C-linearis_contig7:2468130..2468944- (Chordaria linearis ClinC8C monoicous)
GAGCGAAGGGGAGACGCGAAGGAAGAAGAGGAGGCGGGGGGTGTCGGTAG
CCCCGCGAGCGGTGGGGCGGGGTCGAGGACCCCGCGCGTGCTGTGTAGTC
CTCGGTGCCTGGACGAGCTGCTGGATTGTCTGGTGGAGTACAGGGACGAA
GACGGCCGGAGCGAAGGGGAGACGCGAAGGAAGAAGAGGAGGCGGGGGGT
GTCGGTAGCCCCGCGAGCGGTGGGGCGGGGTCGAGGACCCCGCGCGTGCT
GTGTAGTCCTCGGTGCCTGGACGAGCTGCTGGATTGTCTGGTGGAGTACA
GGGACGAAGACGGCCGGCCTATCCTGTACTTGAACGACGAGGCCGAGTCC
GAGGCCGCTGCAGCAGGCGTCGACAGCGGCATCGGCATCGGCATGTTACC
GATGCAAGACGAATGGGACGAGCGGGAGATGGGCAACCGCAGGCTGGCGC
GACGGCGGGGGGCGGAGGACCAGGCGGCGGCGGAGATCCGTCTCTGGGGG
TGCGAAACGGACGCGGCGGGAGTGCCCGTGTCCGGTGGGGAGGATGGCGG
GGACGCCTATCCTGTACTTGAACGACGAGGCCGAGTCCGAGGCCGCTGCA
GCAGGCGTCGACAGCGGCATCGGCATCGGCATGTTACCGATGCAAGACGA
ATGGGACGAGCGGGAGATGGGCAACCGCAGGCTGGCGCGACGGCGGGGGG
CGGAGGACCAGGCGGCGGCGGAGATCCGTCTCTGGGGGTGCGAAACGGAC
GCGGCGGGAGTGCCCGTGTCCGGTGGGGAGGATGGCGGGGAC
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