mRNA_C-linearis_contig7.14467.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14467.1
Unique NamemRNA_C-linearis_contig7.14467.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2279298..2279826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14467.1prot_C-linearis_contig7.14467.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2279437..2279793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.463844-UTR-C-linearis_contig7:2279297..22794361622930278.463844-UTR-C-linearis_contig7:2279297..2279436Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2279298..2279436 +
1690880989.3242886-UTR-C-linearis_contig7:2279297..22794361690880989.3242886-UTR-C-linearis_contig7:2279297..2279436Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2279298..2279436 +
1622930278.491995-UTR-C-linearis_contig7:2279793..22798261622930278.491995-UTR-C-linearis_contig7:2279793..2279826Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2279794..2279826 +
1690880989.3495677-UTR-C-linearis_contig7:2279793..22798261690880989.3495677-UTR-C-linearis_contig7:2279793..2279826Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2279794..2279826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.475601-CDS-C-linearis_contig7:2279436..22797931622930278.475601-CDS-C-linearis_contig7:2279436..2279793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2279437..2279793 +
1690880989.3354275-CDS-C-linearis_contig7:2279436..22797931690880989.3354275-CDS-C-linearis_contig7:2279436..2279793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2279437..2279793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14467.1

>prot_C-linearis_contig7.14467.1 ID=prot_C-linearis_contig7.14467.1|Name=mRNA_C-linearis_contig7.14467.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=119bp
MNLYPSTMQNVSVSVWVSRWWVWVFGEARKSHACGWQNIRLDPKVWGKAA
ALCWMSRDMPQQSRAIETMTVHTFSSRRMPPLQTRSWENVVESSSTWSCN
NPICGERVIDYMRAFFFR*
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mRNA from alignment at C-linearis_contig7:2279298..2279826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14467.1 ID=mRNA_C-linearis_contig7.14467.1|Name=mRNA_C-linearis_contig7.14467.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=529bp|location=Sequence derived from alignment at C-linearis_contig7:2279298..2279826+ (Chordaria linearis ClinC8C monoicous)
CGAAGCGCATGCTAGAGCGCCTGTTTGGGGACTCTTTTTCAGTTTCCCGC
TCTCTGTATTCTTGTTGGCTTGCTGCCCTCTCCTTCCTGTCTCCCATCCG
TTTCATCACACATTCATAAAACGTAAACAGCATGCGTACATGAACCTCTA
TCCAAGCACCATGCAGAACGTCTCTGTCTCTGTCTGGGTGTCTCGTTGGT
GGGTTTGGGTTTTTGGTGAAGCTAGGAAATCACATGCATGTGGCTGGCAA
AATATTCGACTTGATCCGAAAGTTTGGGGAAAAGCGGCAGCTCTCTGTTG
GATGTCTCGAGATATGCCTCAACAAAGTCGTGCGATCGAGACGATGACCG
TCCACACTTTTTCAAGCCGACGCATGCCACCGCTGCAGACGCGTTCTTGG
GAAAATGTAGTCGAAAGTAGTTCGACTTGGAGCTGTAATAATCCCATCTG
TGGTGAAAGGGTTATAGACTACATGCGCGCCTTTTTTTTCCGGTGAAACG
AATATCCTCTCCACAACCACATAAGAAAA
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Coding sequence (CDS) from alignment at C-linearis_contig7:2279298..2279826+

>mRNA_C-linearis_contig7.14467.1 ID=mRNA_C-linearis_contig7.14467.1|Name=mRNA_C-linearis_contig7.14467.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at C-linearis_contig7:2279298..2279826+ (Chordaria linearis ClinC8C monoicous)
ATGAACCTCTATCCAAGCACCATGCAGAACGTCTCTGTCTCTGTCTGGGT
GTCTCGTTGGTGGGTTTGGGTTTTTGGTGAAGCTAGGAAATCACATGCAT
GTGGCTGGCAAAATATTCGACTTGATCCGAAAGTTTGGGGAAAAGCGGCA
GCTCTCTGTTGGATGTCTCGAGATATGCCTCAACAAAGTCGTGCGATCGA
GACGATGACCGTCCACACTTTTTCAAGCCGACGCATGCCACCGCTGCAGA
CGCGTTCTTGGGAAAATGTAGTCGAAAGTAGTTCGACTTGGAGCTGTAAT
AATCCCATCTGTGGTGAAAGGGTTATAGACTACATGCGCGCCTTTTTTTT
CCGGTGAATGAACCTCTATCCAAGCACCATGCAGAACGTCTCTGTCTCTG
TCTGGGTGTCTCGTTGGTGGGTTTGGGTTTTTGGTGAAGCTAGGAAATCA
CATGCATGTGGCTGGCAAAATATTCGACTTGATCCGAAAGTTTGGGGAAA
AGCGGCAGCTCTCTGTTGGATGTCTCGAGATATGCCTCAACAAAGTCGTG
CGATCGAGACGATGACCGTCCACACTTTTTCAAGCCGACGCATGCCACCG
CTGCAGACGCGTTCTTGGGAAAATGTAGTCGAAAGTAGTTCGACTTGGAG
CTGTAATAATCCCATCTGTGGTGAAAGGGTTATAGACTACATGCGCGCCT
TTTTTTTCCGGTGA
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