mRNA_C-linearis_contig7.14462.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14462.1
Unique NamemRNA_C-linearis_contig7.14462.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig7.14462.1 vs. uniprot
Match: D7G0M7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M7_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 3.790e-126
Identity = 175/209 (83.73%), Postives = 188/209 (89.95%), Query Frame = 1 
Query:    1 INKTASDEVFDGGYSPPPSDPRFSTVTRMELTKTVYTPGYAIRRPKEGFDRLTANRTNYSLGNH-TAELATATAELQMKHPRDRPLVDQPAMGGPTLSDGSYRLDAGARDSIRRGGGGGEGVFGVRFDIINGRGDEGARDKASMRSGPRRTLNNAEKGSLHPTDAWGDVPGGMYVDILTGKERERFEAPERGAGAPVRSDTVAGRTRPW 624
            +NK ASDEVFDG YSPPPSDPRFSTVTRMELTK+V+TPGYAIRRPKEGFDRL ANRTNYSLG H T EL TATAELQMKHPRD+P VDQPA+GG TL DGSYRLD  ARDS+RRGGGGGEGV GVRFD+INGR DEGAR K +MR+GPRRTLNNAEK  LHPTD WGDVPGGMYVDILTGK+R +F+ PERGAGAPVRSDTV+GRTRPW
Sbjct:    2 VNKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 210
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BLAST of mRNA_C-linearis_contig7.14462.1 vs. uniprot
Match: A0A7S4DHZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHZ4_HETAK)

HSP 1 Score: 110 bits (274), Expect = 7.320e-27
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:    7 KTASD-EVFDGGYSPPPSDPRFSTVTRMELTKTVYTPGYAIRRPKEGFDRLTANRTNYSLGNHTAELATATAELQMKHPRDRP-LVDQPAMGGPTLSDGSYRLDAGARDSIRRGGGGGEGVFGVRFDIINGRGDEGARDKASMRSGPRRTLNNAEK 468
            K  SD E   GGYS  P D  + TV + ELTK+ +T GY+  +P +GFDR TANRTNYSLG+H+ E  +A   LQ+ HP +R    +QP +GG    +G Y  D  +  +I+RGG G  GV  + FDI+ G      R     R GPR + N  +K
Sbjct:    6 KNKSDKESIQGGYSYIP-DQHYKTVAQAELTKSTHTHGYSKAKPGDGFDRQTANRTNYSLGSHSIEYKSANHALQLSHPEERSHRPEQPQLGGWNRGNGHYHQDIESMRTIQRGGAGAGGVLQLNFDIVTGADKPHVRADNLRRFGPRVSENVRQK 160
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BLAST of mRNA_C-linearis_contig7.14462.1 vs. uniprot
Match: A0A7S2S3K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3K8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.910e-26
Identity = 76/217 (35.02%), Postives = 114/217 (52.53%), Query Frame = 1 
Query:    1 INKTASD-EVFDGGYSPPPSDPR--FSTVTRMELTKTVYTPGYAIRRPKEGFDRLTANRTNYSLGNHTAELAT-----ATAELQMKHPRDRPLVDQPAMGGPTLSDGSYRLDAGARDSIRRGGGGGEGVFGVRFDIINGRGDEGARDKASMRSGPRRTLNNAEKGSLHPTDAWGDVPGGMYVDILTGKERERFEAPER-GAGAPVRSDTVAGRTRPW 624
            I+K ASD +   G    P  DPR  F T    +             R +  FDRL+A++TNY +   T+ L T      T+ +   HP+ RP  +Q A+GG   S G Y  +  A+++++RGGGGGEG  GVRF+I+   G   AR+ A +++GPR ++N  E      ++ +GD    M  +I+TGK+   F+AP+  G    +R +    RTRPW
Sbjct:   65 IHKNASDKDSIQGAEGGPYHDPRKVFKTTFASDYHSGASALSEKYVRERPAFDRLSASKTNYEI---TSPLETIPPFKTTSHVLHAHPKTRPQPEQAAIGGWRTSTGEYCTNELAKETVKRGGGGGEGSLGVRFNIVTNEGAPRARETALLQTGPRVSMNKKEPWR-QGSNRFGDSD--MQTNIITGKQHAHFQAPKPLGPADLLRPNEAIARTRPW 275
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BLAST of mRNA_C-linearis_contig7.14462.1 vs. uniprot
Match: A0A7S2D1K6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1K6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.020e-21
Identity = 77/205 (37.56%), Postives = 102/205 (49.76%), Query Frame = 1 
Query:   22 EVFDGG---YSPPPSDPRFSTVTRMELTKTVYTPGYAIRRPKEGFDRLTANRTNYSLGNHTAELATATAELQMKHPRDRPLVDQPAMGGPTLSDGSYRLDAGARDSIRRGGGGGEGVFGVRFDIINGRGDEGARDKASMRSGPRRTLNNAEKGSLHPTDAWGDVPGGMYVDILTGKERERFEAP-ERGAGAPVRSDTVAGRTRPW 624
            E F GG   Y  P    R +  +      T+++  Y    PK  + RLTA RTNY+LG +  +LA+ T+      P     V   A  G   +   Y  D  AR+SI RGGGGGEG  G RFDIING+ D   R++ SMR+G R ++N  E  S    D +GD      V+IL+G+ R R   P ++ A    R D     TRPW
Sbjct:   80 ESFQGGPPKYKDPNVVYRTTKASDFNHESTLHSNEYMKSEPK--YTRLTAGRTNYTLGAYEGKLAS-TSHTHHAPPCPIERVKGQATIGGWQTGNKYHTDIHARESIMRGGGGGEGSLGTRFDIINGKDDPSFRNRVSMRTGARVSVNKREPWS-QGADRYGDHH--EPVNILSGQPRTRHNPPPQQNALQLRRPDQPLLATRPW 278
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BLAST of mRNA_C-linearis_contig7.14462.1 vs. uniprot
Match: A0A835YXM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.590e-20
Identity = 66/171 (38.60%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  115 GYAIRRPKEGFDRLTANRTNYSLGNHTAELATATAELQMKHPRDRPLVDQPAMGGPTLSDGSYRLDAGARDSIRRGGGGGEGVFGVRFDIINGRGDEGARDKASMRSGPRRTLNNAEKGSLHPTDAWGDVPGGMYVDILTGKE-RERFEAPERGAGAPVRSDTVAGRTRPW 624
            G+  +RP  G+DRLTA+RTNYSLG   A  +TA AE Q   PR R  V QP +G           DA                 G  + II G   + AR++     GPR TLN  E+  LHPTD+WG    G +VDI+TGK        P       +R D +  RTRPW
Sbjct:   99 GFKRQRPLPGYDRLTASRTNYSLGTQPATSSTAAAE-QFADPRTRTPVQQPCIGP---------ADA---------------CLGSSYHIITGESWD-AREQRLRCMGPRHTLNQEERCKLHPTDSWGGDLYGTHVDIVTGKRVANPIRPPAPTVETLLRPDALGLRTRPW 243
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0M7_ECTSI3.790e-12683.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4DHZ4_HETAK7.320e-2742.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2S3K8_9STRA5.910e-2635.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D1K6_9STRA8.020e-2137.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YXM3_9STRA1.590e-2038.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2246715..2247960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001520.1
Exons2
Model size627
Cds size627
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930304.3253975-CDS-C-linearis_contig7:2246714..22467581622930304.3253975-CDS-C-linearis_contig7:2246714..2246758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2246715..2246758 +
1690881002.584494-CDS-C-linearis_contig7:2246714..22467581690881002.584494-CDS-C-linearis_contig7:2246714..2246758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2246715..2246758 +
1622930304.3456717-CDS-C-linearis_contig7:2247377..22479601622930304.3456717-CDS-C-linearis_contig7:2247377..2247960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2247378..2247960 +
1690881002.5965328-CDS-C-linearis_contig7:2247377..22479601690881002.5965328-CDS-C-linearis_contig7:2247377..2247960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2247378..2247960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14462.1prot_C-linearis_contig7.14462.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2246715..2247960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14462.1

>prot_C-linearis_contig7.14462.1 ID=prot_C-linearis_contig7.14462.1|Name=mRNA_C-linearis_contig7.14462.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=209bp
INKTASDEVFDGGYSPPPSDPRFSTVTRMELTKTVYTPGYAIRRPKEGFD
RLTANRTNYSLGNHTAELATATAELQMKHPRDRPLVDQPAMGGPTLSDGS
YRLDAGARDSIRRGGGGGEGVFGVRFDIINGRGDEGARDKASMRSGPRRT
LNNAEKGSLHPTDAWGDVPGGMYVDILTGKERERFEAPERGAGAPVRSDT
VAGRTRPW*
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mRNA from alignment at C-linearis_contig7:2246715..2247960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14462.1 ID=mRNA_C-linearis_contig7.14462.1|Name=mRNA_C-linearis_contig7.14462.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1246bp|location=Sequence derived from alignment at C-linearis_contig7:2246715..2247960+ (Chordaria linearis ClinC8C monoicous)
ATAAACAAGACCGCCTCTGACGAGGTGTTTGACGGGGGCTACAGGTAACC
GGGAGGAGCTTGGCGAGACCAACGAGGTTGCCGATTCACACCACCTACGG
CGGGCGTTCTGGTGCAAGTAGTTAGTCTCCGGCGTATCAACAGATATCCA
CTACAAGTTCCATTGTGTTTGACTTGCGCATGCAATATTCGCTTCAGCTG
GCACGGAGCCTGTGTCAGATTTCGGGTGTGTTCATTGCTCGAGTGCGTGA
GATACCCAACCCCCTCCTGCAGCCGCTATGCACAAAGCCGTAGGTGGTTT
AAAGCTTGTTTTGTTGGATCAACTCTTGCTGTTCACTTCGTCCGTTGTTC
TTCTGGTGAAGTCCAGGATTGCCATACACAACTTAAAAACGTGTGGACGT
TGCAGCCTAGCATTATCATCTGGCATGTATGTGAGCGTGGGTGCGGTTGT
ATGACTTCGTCGCTCTTTTCGCCGAATCCATTCCTGCCCGATATTACCCC
GAGCATTCGAATGGTGCGTTCCTCCCGAGCAGGTCCCTCCAACAATATTT
GATTAAAGTGAATCATCTACAGTATCTGCCCAAACCACCTCCAGACATAA
TAAGCCAAAACGGTACGCGATCTCCCTGAAACGCTGCTGGCCCTTCGCCG
TACATACACGCAGCCCACCACCATCGGACCCGCGGTTTTCCACGGTGACG
AGGATGGAGCTGACCAAGACCGTGTACACCCCGGGCTACGCCATCCGGCG
CCCGAAGGAGGGCTTCGACCGCCTCACGGCGAACCGCACCAACTACTCCC
TCGGCAACCACACCGCGGAACTAGCGACCGCGACGGCAGAGCTCCAGATG
AAGCACCCACGCGACCGCCCCCTCGTGGATCAGCCGGCCATGGGGGGACC
GACGCTCAGCGACGGGTCCTACCGCCTCGACGCCGGGGCGAGGGACAGCA
TCCGCAGGGGGGGCGGGGGCGGGGAGGGTGTGTTCGGGGTCAGGTTTGAC
ATCATCAATGGGAGGGGGGACGAGGGGGCGAGGGACAAGGCCAGCATGCG
CTCGGGGCCGAGGAGGACGCTCAACAACGCCGAGAAGGGGTCCTTGCATC
CGACCGACGCGTGGGGGGACGTGCCCGGAGGGATGTATGTTGACATCTTG
ACCGGGAAGGAGCGGGAGAGGTTCGAGGCGCCCGAGCGAGGGGCCGGGGC
TCCCGTCAGGAGTGATACTGTTGCGGGGAGGACTCGGCCTTGGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig7:2246715..2247960+

>mRNA_C-linearis_contig7.14462.1 ID=mRNA_C-linearis_contig7.14462.1|Name=mRNA_C-linearis_contig7.14462.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at C-linearis_contig7:2246715..2247960+ (Chordaria linearis ClinC8C monoicous)
ATAAACAAGACCGCCTCTGACGAGGTGTTTGACGGGGGCTACAGATAAAC
AAGACCGCCTCTGACGAGGTGTTTGACGGGGGCTACAGCCCACCACCATC
GGACCCGCGGTTTTCCACGGTGACGAGGATGGAGCTGACCAAGACCGTGT
ACACCCCGGGCTACGCCATCCGGCGCCCGAAGGAGGGCTTCGACCGCCTC
ACGGCGAACCGCACCAACTACTCCCTCGGCAACCACACCGCGGAACTAGC
GACCGCGACGGCAGAGCTCCAGATGAAGCACCCACGCGACCGCCCCCTCG
TGGATCAGCCGGCCATGGGGGGACCGACGCTCAGCGACGGGTCCTACCGC
CTCGACGCCGGGGCGAGGGACAGCATCCGCAGGGGGGGCGGGGGCGGGGA
GGGTGTGTTCGGGGTCAGGTTTGACATCATCAATGGGAGGGGGGACGAGG
GGGCGAGGGACAAGGCCAGCATGCGCTCGGGGCCGAGGAGGACGCTCAAC
AACGCCGAGAAGGGGTCCTTGCATCCGACCGACGCGTGGGGGGACGTGCC
CGGAGGGATGTATGTTGACATCTTGACCGGGAAGGAGCGGGAGAGGTTCG
AGGCGCCCGAGCGAGGGGCCGGGGCTCCCGTCAGGAGTGATACTGTTGCG
GGGAGGACTCGGCCTTGGTAACCCACCACCATCGGACCCGCGGTTTTCCA
CGGTGACGAGGATGGAGCTGACCAAGACCGTGTACACCCCGGGCTACGCC
ATCCGGCGCCCGAAGGAGGGCTTCGACCGCCTCACGGCGAACCGCACCAA
CTACTCCCTCGGCAACCACACCGCGGAACTAGCGACCGCGACGGCAGAGC
TCCAGATGAAGCACCCACGCGACCGCCCCCTCGTGGATCAGCCGGCCATG
GGGGGACCGACGCTCAGCGACGGGTCCTACCGCCTCGACGCCGGGGCGAG
GGACAGCATCCGCAGGGGGGGCGGGGGCGGGGAGGGTGTGTTCGGGGTCA
GGTTTGACATCATCAATGGGAGGGGGGACGAGGGGGCGAGGGACAAGGCC
AGCATGCGCTCGGGGCCGAGGAGGACGCTCAACAACGCCGAGAAGGGGTC
CTTGCATCCGACCGACGCGTGGGGGGACGTGCCCGGAGGGATGTATGTTG
ACATCTTGACCGGGAAGGAGCGGGAGAGGTTCGAGGCGCCCGAGCGAGGG
GCCGGGGCTCCCGTCAGGAGTGATACTGTTGCGGGGAGGACTCGGCCTTG
GTAA
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