mRNA_C-linearis_contig7.14457.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14457.1
Unique NamemRNA_C-linearis_contig7.14457.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2170620..2171918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size552
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.7215924-CDS-C-linearis_contig7:2170621..21707611622930273.7215924-CDS-C-linearis_contig7:2170621..2170761Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2170622..2170761 -
1690880987.2715774-CDS-C-linearis_contig7:2170621..21707611690880987.2715774-CDS-C-linearis_contig7:2170621..2170761Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2170622..2170761 -
1622930273.744118-CDS-C-linearis_contig7:2171509..21719181622930273.744118-CDS-C-linearis_contig7:2171509..2171918Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2171510..2171918 -
1690880987.28211-CDS-C-linearis_contig7:2171509..21719181690880987.28211-CDS-C-linearis_contig7:2171509..2171918Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2171510..2171918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14457.1prot_C-linearis_contig7.14457.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2170622..2171918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14457.1

>prot_C-linearis_contig7.14457.1 ID=prot_C-linearis_contig7.14457.1|Name=mRNA_C-linearis_contig7.14457.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
YFTAHTLSGWELRRMAFVTLSAATEVTLSAWWLQPQRTSCARVRRQQHDL
VNVPWPHMNSLSNAAAALSSAAGGLRRKQQQKKLRAAVGASMMSMITTSQ
DDSAVAAEGARAAPPKQRPTHDTPTATAGHRSVEGSGTISDQLVPPPQQA
AAAAATTGAVGRNGAPLGKINREHKATAAASTL
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mRNA from alignment at C-linearis_contig7:2170620..2171918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14457.1 ID=mRNA_C-linearis_contig7.14457.1|Name=mRNA_C-linearis_contig7.14457.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1299bp|location=Sequence derived from alignment at C-linearis_contig7:2170620..2171918- (Chordaria linearis ClinC8C monoicous)
TATTTTACTGCACACACGTTGTCTGGGTGGGAACTTAGGCGTATGGCGTT
CGTCACTCTGTCGGCAGCAACCGAAGTCACCCTGTCGGCCTGGTGGTTGC
AGCCGCAGCGGACCTCGTGCGCCAGAGTACGTCGGCAGCAGCATGACCTG
GTCAACGTTCCATGGCCCCATATGAACTCGCTTTCCAACGCGGCGGCAGC
TTTAAGCTCGGCCGCGGGTGGCTTGAGGCGAAAGCAGCAGCAGAAGAAGT
TGCGGGCGGCCGTGGGAGCATCCATGATGTCGATGATAACGACTAGTCAA
GACGACAGCGCCGTCGCAGCCGAAGGAGCACGCGCAGCACCTCCCAAGCA
ACGACCGACTCATGATACTCCAACTGCCACCGCGGGCCACCGCTCCGTTG
AGGGATCAGGCGAGTAACCTGAGGAATAGACGCACGCTCCCTGCTAGTCT
GGGGCCCCCGTGTCACTGGGTGTAACGAGGCAAGTCTCACTGAACAGCCT
CGATAGCCGAAACACTCCGGTAGATGTATGGTAGGGTTGAACAGCATCAA
AGGGGTTGAAGAAGAGCGGGTTTGGTGCAATATCCACCGCCCCGCAACGC
CCTCTCGCATACAATGACTCCCCTCCCCTCCCCAAATGGGGTTTGCTACT
ACGCTGTGAGAGTAGATAATAGCTCGTGCTCATGAGTGAAGTCTGCGTGG
TTGTATCAAGAATAGGCGACCCCACCACTATTTCCTGCTCCGGAGATGCC
TGCTGTGACGCCGGTAGTCGTCAGGGGACGCTACGACGTAGATTCTGCAG
GTCACACACACCCTCCTTTTCCCAGCGTACATCCCGCTGGCACAGGCAGC
AATGTTGTTGTGCCAGCGAAGTGTCACACATGCAGATGATGTACGTCGCC
GCTAGTCTCGTATGTAACCTTGAAAACACGTCGAAATTTACAAACAGAAG
CGTGGTTTTGACCCTTGCACCAGAAATCAATTTATTTTGCAAGGACACAC
AGCCAGGGCACGAGGCACTCCCTACCATGTTCTCGGAGCGTGTGGCCTCC
TCGTCAAACACCACCACGAACCGTAGCTCCACCCCAGCAGCATGACTGTG
TTCAACTCCCCCACACCCTTCAAACACTCCTCCCCCGCGGTTACACAAAA
CCAGCAGGCACAATTTCGGACCAGCTGGTCCCCCCACCGCAGCAGGCGGC
AGCGGCAGCAGCAACAACCGGCGCCGTAGGAAGGAACGGGGCACCACTCG
GAAAAATCAACCGCGAACACAAGGCAACAGCGGCAGCATCGACCCTCTC
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Coding sequence (CDS) from alignment at C-linearis_contig7:2170620..2171918-

>mRNA_C-linearis_contig7.14457.1 ID=mRNA_C-linearis_contig7.14457.1|Name=mRNA_C-linearis_contig7.14457.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig7:2170620..2171918- (Chordaria linearis ClinC8C monoicous)
TATTTTACTGCACACACGTTGTCTGGGTGGGAACTTAGGCGTATGGCGTT
CGTCACTCTGTCGGCAGCAACCGAAGTCACCCTGTCGGCCTGGTGGTTGC
AGCCGCAGCGGACCTCGTGCGCCAGAGTACGTCGGCAGCAGCATGACCTG
GTCAACGTTCCATGGCCCCATATGAACTCGCTTTCCAACGCGGCGGCAGC
TTTAAGCTCGGCCGCGGGTGGCTTGAGGCGAAAGCAGCAGCAGAAGAAGT
TGCGGGCGGCCGTGGGAGCATCCATGATGTCGATGATAACGACTAGTCAA
GACGACAGCGCCGTCGCAGCCGAAGGAGCACGCGCAGCACCTCCCAAGCA
ACGACCGACTCATGATACTCCAACTGCCACCGCGGGCCACCGCTCCGTTG
AGGGATCAGTATTTTACTGCACACACGTTGTCTGGGTGGGAACTTAGGCG
TATGGCGTTCGTCACTCTGTCGGCAGCAACCGAAGTCACCCTGTCGGCCT
GGTGGTTGCAGCCGCAGCGGACCTCGTGCGCCAGAGTACGTCGGCAGCAG
CATGACCTGGTCAACGTTCCATGGCCCCATATGAACTCGCTTTCCAACGC
GGCGGCAGCTTTAAGCTCGGCCGCGGGTGGCTTGAGGCGAAAGCAGCAGC
AGAAGAAGTTGCGGGCGGCCGTGGGAGCATCCATGATGTCGATGATAACG
ACTAGTCAAGACGACAGCGCCGTCGCAGCCGAAGGAGCACGCGCAGCACC
TCCCAAGCAACGACCGACTCATGATACTCCAACTGCCACCGCGGGCCACC
GCTCCGTTGAGGGATCAGGCACAATTTCGGACCAGCTGGTCCCCCCACCG
CAGCAGGCGGCAGCGGCAGCAGCAACAACCGGCGCCGTAGGAAGGAACGG
GGCACCACTCGGAAAAATCAACCGCGAACACAAGGCAACAGCGGCAGCAT
CGACCCTCGCACAATTTCGGACCAGCTGGTCCCCCCACCGCAGCAGGCGG
CAGCGGCAGCAGCAACAACCGGCGCCGTAGGAAGGAACGGGGCACCACTC
GGAAAAATCAACCGCGAACACAAGGCAACAGCGGCAGCATCGACCCTC
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