mRNA_C-linearis_contig7.14445.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14445.1
Unique NamemRNA_C-linearis_contig7.14445.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:1853129..1853484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.537724-CDS-C-linearis_contig7:1853130..18532531622930273.537724-CDS-C-linearis_contig7:1853130..1853253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1853131..1853253 -
1690880987.1887133-CDS-C-linearis_contig7:1853130..18532531690880987.1887133-CDS-C-linearis_contig7:1853130..1853253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1853131..1853253 -
1622930273.5526981-CDS-C-linearis_contig7:1853412..18534841622930273.5526981-CDS-C-linearis_contig7:1853412..1853484Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1853413..1853484 -
1690880987.2000678-CDS-C-linearis_contig7:1853412..18534841690880987.2000678-CDS-C-linearis_contig7:1853412..1853484Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1853413..1853484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14445.1prot_C-linearis_contig7.14445.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 1853131..1853484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14445.1

>prot_C-linearis_contig7.14445.1 ID=prot_C-linearis_contig7.14445.1|Name=mRNA_C-linearis_contig7.14445.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=65bp
ERAERDQFGRNLKRAKGELIPKDAARAILHTFHVLTGKKSGRDCAEALSE
RNAIIRTSNLLGYDD
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mRNA from alignment at C-linearis_contig7:1853129..1853484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14445.1 ID=mRNA_C-linearis_contig7.14445.1|Name=mRNA_C-linearis_contig7.14445.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=356bp|location=Sequence derived from alignment at C-linearis_contig7:1853129..1853484- (Chordaria linearis ClinC8C monoicous)
GAGAGGGCCGAACGGGATCAATTCGGCAGGAACCTGAAGCGGGCCAAGGG
AGAACTCATTCCGAAGGACGCGGTGAGTTGCCCGGTGGTTGGTTCTCGAG
AGAAAAACATGTTGGATCAAGCACCCTCCGCGAGCAGCTCTCTGTCCGCT
GCCTCAACCTTTTGGACGCGTCGCAGCGGCACTGATCGATCCCCTCTCGT
ACCCCGCCCAACGACCCACCCGCCCGCCCAGGCTCGTGCTATCCTCCACA
CGTTCCACGTCCTCACGGGCAAGAAGAGCGGTCGCGATTGCGCCGAGGCG
CTTTCGGAAAGGAACGCCATCATCAGGACCTCCAACCTCCTCGGCTACGA
CGATGA
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Coding sequence (CDS) from alignment at C-linearis_contig7:1853129..1853484-

>mRNA_C-linearis_contig7.14445.1 ID=mRNA_C-linearis_contig7.14445.1|Name=mRNA_C-linearis_contig7.14445.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at C-linearis_contig7:1853129..1853484- (Chordaria linearis ClinC8C monoicous)
GAGAGGGCCGAACGGGATCAATTCGGCAGGAACCTGAAGCGGGCCAAGGG
AGAACTCATTCCGAAGGACGCGGAGAGGGCCGAACGGGATCAATTCGGCA
GGAACCTGAAGCGGGCCAAGGGAGAACTCATTCCGAAGGACGCGGCTCGT
GCTATCCTCCACACGTTCCACGTCCTCACGGGCAAGAAGAGCGGTCGCGA
TTGCGCCGAGGCGCTTTCGGAAAGGAACGCCATCATCAGGACCTCCAACC
TCCTCGGCTACGACGATGCTCGTGCTATCCTCCACACGTTCCACGTCCTC
ACGGGCAAGAAGAGCGGTCGCGATTGCGCCGAGGCGCTTTCGGAAAGGAA
CGCCATCATCAGGACCTCCAACCTCCTCGGCTACGACGAT
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