mRNA_C-linearis_contig7.14444.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 1047 bits (2708), Expect = 0.000e+0 Identity = 554/568 (97.54%), Postives = 559/568 (98.42%), Query Frame = 2
Query: 29 MVSALNKRAKVPSRRELLSRMRAVKTALENEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIERHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPARSRLLDENVELLVYLRNVWGAVDEWKNSAARKKKAAVSML 1732
MVSALNKRAKVPSRRELLSRMRAVKTALE+EVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGM+ERHDLTGRVIACVTDCEPSMIKAGRLLEVDG TISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLS+MQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDL AVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDG+NILEYREGKRRQPQGFKRKQVYATALDPR KHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQL YPLLAALARRVLAIPSSQAQSER+FSTAGLTVTP RSRLLDENVELLVYLRNVWG VDEWK SA RKKK AVSML
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSATRKKKIAVSML 568
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 688 bits (1776), Expect = 4.850e-242 Identity = 358/527 (67.93%), Postives = 418/527 (79.32%), Query Frame = 2
Query: 2 FVEYSELKAMVSALNKRAKVPSRRELLSRMRAVKTALENEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIERHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQP-APLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERM 1579
FVEY E A+VS LNK+A+ P RR L+ +MR +K LE+EVALMLD E+VAITTDGWTSR+NESYMSLTVAYID W+LHHLSL+C KHTG+T GEDLA + MIERH LTGRV ACVTDCEPSM+KAGRLLEV G + HIGCSNHRMESTTSSVFNG+SLGAL AR +VGRYK+SSQM+ RL GIL++ PLS++QDVETRWWS+WAM+ RLLYLMKAIKLHES D + P+LS+TDWEVLRLIEPILRPFM+AQKDLEGA+YVTGSMT+ K+ ELR GLEAAI DL A + G+ +T++AMEAV PDAEAL DF NRWGDG++ILEYREGKRRQPQGFK +QV ATA+DPR KHLYGI+Q EHA VWRAVA+ AVDIA K + D S PA+ PV T P AP GGQGA KR R+SAFEAAAA + DEKREQL ++VD+EV++F+ PGI +W T KKV+N+PLD WR +Q+ +P LAALARRVLAIPSSQA SER+
Sbjct: 28 FVEYPEFHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAP--GGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYW---GTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 363 bits (933), Expect = 1.420e-110 Identity = 227/555 (40.90%), Postives = 311/555 (56.04%), Query Frame = 2
Query: 134 LDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIERHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAP-------------------------------------------ASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRV-WDMQKTNTGDKKVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPARSRLLDENVELLVYLRN 1663
+ E VA+T+DGWT +N++YMS T YI + L L L+C KH T GEDL V MI R+ LTGR +A TDCE SM+KAGRLLE + G ++H+GC HR+ES TS F G + AL LAR +V RY SSQ + RL Q+C I+Q+E +++QDVETRWWST+ + RL+ L + I HE +D PLL + DWEVL+L+E +L+PFM AQK LE ++ VT + +A+L++GL+ A+ L A + + +A + V A+AL D + RWGD T++L Y EG RRQP+GFK++QV ATAL PR K LYGI++ EH+ VW A A+ AV +A+ A + + +S P+ +PA A S+ R Q+ +I+ EV AFK PG+ V W+ + ++V PL+ WR K YP LA+LARRVL IP+ QAQSER+FS+AGL VT R+R+ ENV L+V+LRN
Sbjct: 1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEG-VTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPA-ESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGASSSPIPVEPAXXXXXXXXXXXXXXXXXXA------HGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAVSWEEK-----GQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 336 bits (861), Expect = 6.060e-105 Identity = 221/578 (38.24%), Postives = 311/578 (53.81%), Query Frame = 2
Query: 5 VEYSELKAMVSALNKRAKVPSRRELLSRMRAVKTALENEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIERHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMAD------FTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNT--GDKKVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPARSRLLDENVELLVYLRNVWGAVDEWKNSAARKK 1711
VE MV L RA VP +R L ++R +K L+ EV L E VA+T+DGWTS +N++YM T YI + L L ++C KH G TTGEDL V MI R+ LT R +A TDCEPSM+KAGRLLE + G ++H+GC HR+ES TS F G + AL LAR +V RY SSQ + RL Q+ I+Q+E ++QDVETRWWST+A + RLL L + I HE +D + PLL + DWEVL+++EP+ +PF+ +QK E ++ VT S+ I +A+LR+ L+ A+ L A A AE+++A+ F + T+++ +P+GFK+KQV ATALDPR K LYGI++ EH+ VW AVA+ AV +A+ E A++ Q+ GAS +++ +E +A D + GDK+ N ++ RVL IP+SQ QSER+FS+AGL VT R+R+ ENVEL+++LRNV VD W + ++K
Sbjct: 2 VENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEG-VTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHA----------------CPAESIVAEAKKDVFFAPKHVRPTSVIV-------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAI------------EAKATEDTQSA--------GASS-----------------------------------SLIPVEPAAXXXXXXXXXXDFAAASAVPGDKQQSANA--------------SSSTSRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVLREVDRWNGNGNKRK 486
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 284 bits (727), Expect = 2.270e-86 Identity = 164/355 (46.20%), Postives = 219/355 (61.69%), Query Frame = 2
Query: 176 SRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIERHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPA 1237
S +N++YM+ T YI + L L L+ KH G TTGEDL V MI R+ LTGR +A TDCEP M+KAGRLLE + G +SH+GC HR ES TS F G + AL L R +V RY SSQ + RL Q+C I+Q+E ++QDVETRWWST +D + PLL++ DWEVL+L+EP+L PFM AQK LE ++ VT S+ +A+LR+ L+ AI L A + + +A + + A AL D + RW DGT++L Y EG RRQP+GFK+KQV ATALDPR K LYGI++ EH+ VW AVA+ AV +A+ A + ++ S P+ +PA
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEG-VSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPA-ESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAGAS--SSPIPVEPA 337
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 229 bits (585), Expect = 8.400e-62 Identity = 151/379 (39.84%), Postives = 199/379 (52.51%), Query Frame = 2
Query: 29 MVSALNKRAKVPSRRELLSRMRAVKTALENEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIERHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNG-RSLGALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIAL 1162
MV A+ A+VP +++ ++ MR VK + +V+ +++ E V IT+DGWTS N++YMSLT I WKL LS+DC+K GTTTG+ LAA + + +H LTG+V A TDCEPSM+K GRLL D + IGC N+R+EST+S VFNG R + LAR LV RY SSQ A RL Q +K + +D R+I+ + VTGS+ + + +LR LE AI DL + A AV P +AL D+ +RWGDG NIL Y+EG RRQP GFK V ATALDPR K YG+ + E A VW+ V AV IA+
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQF-----------------------------------VKTYLGVDNK------------RVIQDV----------------VTGSLVVPFIYDLRNSLEDAIDDLVELPPDS-DANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAV 315
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 152 bits (385), Expect = 5.820e-38 Identity = 100/250 (40.00%), Postives = 134/250 (53.60%), Query Frame = 2
Query: 962 DFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQ-----LVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPARSRLLDENVELLVYLRNVWGAVDEWKNS 1696
DF NRWGDG NIL Y+EG+RRQP GFK QV ATALDPR K LYG+ + E A VW+ V AV IA+ + + ++ + XXX DE + + + V +E++AFK + GI++++ K KV+ +PLD WR + +P LA LARRVLAIP++QA+SER+FS AG VT R+ L VELLV LR+ W V+EW+ S
Sbjct: 50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGA---KVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 296
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A3B1JJI0_ASTMX (Zinc finger BED domain-containing protein 1-like n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A3B1JJI0_ASTMX) HSP 1 Score: 132 bits (331), Expect = 1.280e-28 Identity = 149/569 (26.19%), Postives = 242/569 (42.53%), Query Frame = 2
Query: 5 VEYSELKAMVSALNKRAKVPSRRELLSRM--RAVKTALENEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLA-----ALVAGMIERHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSLGAL-GLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHP------LLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQP--QGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKH-AGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPARSRLLDENVELLVYLR 1660
VE + K ++S L R +PSR L +++ + EN + + +AE +AITTDGWTSR ESY+++T Y++ EW++ L + T ++LA A++ ++R + T I TD +++ A G HIGC H + + + L G R +V + KS+ AA L +LQ+ P ++QDV TRW S++ M+ R L A+ + +V LSD D VL + +L+P L Q T SM + + ++ + TD V D ++ +A TNI EG+ P Q F + +TALDPR K L + ++ +A + +H D +++ P DP + A G +KR +S + E +V E+ ++ A I V NPL W+ + YP L+ L++ LA+ ++ SER+FSTAG VT R+ L +NV++L++L+
Sbjct: 126 VENTGFKHLISVLEPRYSIPSRSHLTTKVLPSMYEDTKENVLRGLSNAELIAITTDGWTSRATESYITVTAHYVNNEWEIESPVLQTRPIYESHTSDNLAEVLQEAVLEWKLDRQNTT---IPVTTDNAKNIVNASNA----AGLSPHIGCFAHTVNLASQKGLGVNQISRLLGKVRRVVTFFHKSTTAAAVLKAKQEMLQLPPHKLIQDVATRWNSSYDMLTRYLEQQAAVYSALTEKDVKKNAKDLITLSDQDVTVLEDVVEVLKPMKTITTLLSSEQQPTVSMILPLKHSILTAMKHSGTDSQIV-----------------KDVKSAIA---------TNI----EGRYSNPSLQQFLNE---STALDPRFKSLPHLDDPSRKEIFNNLAEKIIQ----RHPTQDPGQGTSQNPPEDP---ETAASSEGSPPAKRTTLSEL---------FGDFYSTAPTTPTTPELWPDVVKEEIELYRMAKVI-------------SVDANPLKWWKNNEHQYPNLSKLSKHYLAVQATSVASERVFSTAGDIVTAQRAALSPDNVDILIFLK 625
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: UPI0019556103 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019556103) HSP 1 Score: 130 bits (327), Expect = 1.740e-28 Identity = 144/572 (25.17%), Postives = 248/572 (43.36%), Query Frame = 2
Query: 5 VEYSELKAMVSALNKRAKVPSRRELLSRMRAVKTALENEV-ALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIERHDLTGRVIACVTD-------CEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSL-GALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLY-------LMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATA--LDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPG--IRVWDMQKTNTGDK-KVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPARSRLLDENVELLVYL 1657
VE K ++ L VP+R + + + A L+++V AL+ +E +++TTD WTS ESYM++T +ID +WK L L+ + TG ++AA ++ + + + G++++ V D C ++ ++ + E+ G + C+ H ++ ++ + A+ +R LVG +KK + L Q + ++QDV TRW ST++M+ RLL ++ + D L+ W + I+ +L+P + L + S T+ +A L++ AI D ++ + +K L+ + RW E K R VY TA +DPR K L + + + VA A + G+ P S E+ Q SK+ + D+++E + + + E G RV + K D+ K+ + PL W+K Q YP LA +A+R+L IP++ SER+FS AG V ARS LL +NV++LV+L
Sbjct: 7 VEGQGFKNLLKVLEPGYTVPARHTITNALTAKYEGLKDKVSALIQQSEALSLTTDMWTSLRMESYMTVTAHFIDGDWKAQSLVLETKQMEEAHTGINIAARLSEVADTFGIQGKIVSVVCDNAANMTLCVETLKESHKWAEMQG-----VRCAGHTLQLCINAALKQDPICRAVAASRHLVGHFKKGHKAKTGLKQKQEQQNVPQHELIQDVSTRWNSTFSMLERLLEQRWPITAVLSDPNFTKKSDSSTLDLTTAHWNAIEDIKNVLKPMTTLTELLSEEDNASLSATVPMLANLKKR-HLAIADDDSPITKKMK--------------SKLVEEIDGRW----------EFKNRM---MMTNSVYITAAVVDPRFKQLSFLDDAKRDEAYIVVAQLAERLNAVTGTGE--PGSEEE----------------QHVSKKQKN-----------------------DKEKEIAMLLCEDEDDLISRESGGRSRVTEEMKNYLQDRTKIDSGPLGWWKKNQDRYPSLARVAKRLLCIPATSTPSERIFSKAGFIVNKARSCLLPKNVDMLVFL 504
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Match: A0A8C2FYL1_CYPCA (BED-type domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FYL1_CYPCA) HSP 1 Score: 127 bits (318), Expect = 5.710e-27 Identity = 142/563 (25.22%), Postives = 237/563 (42.10%), Query Frame = 2
Query: 5 VEYSELKAMVSALNKRAKVPSRRELLSRM--RAVKTALENEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMIE--RHDLTGRVIACVTDCEPSMIKAGRLLEVDGGTISHIGCSNHRMESTTSSVFNGRSLGAL-GLARTLVGRYKKSSQMAARLVQLCGILQMEPLSMMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHP------LLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLNAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGTNILEYREGKRRQPQGFKRKQVYATALDPRVKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEKREQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLGYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPARSRLLDENVELLVYLR 1660
VE S + ++S L R ++PSR L + + E + + A VA+TTD WTSR +S+M++T YI+ +W++ + L T E LA ++ ++ + D I TD +++ A G HIGC H + + + L G R +V + +S+ AA L +LQ+ P ++QDV TRW S++ M+ R L A+ + ++ LSD D VL + +L+P + Q T SM + + ++ + TD V + A+ A+F R+ D + Q F + +TALDPR K L + + ++ + + L +H ++ AS E + +P + Q A+ R A A + S+ + + D E+ +K A I V +NPL W+ + YP L+ LA+R LA+ ++ SER+FSTAG VT R+ L ENV++L++L+
Sbjct: 126 VENSGFRHLISVLEPRYEIPSRTHLTATVIPSMYNNVKEKVIEGLSSAHLVALTTDCWTSRATQSFMTVTAHYINDDWEIQNPVLQTRPIYEAHTSEHLAEVLREVVVEWKLDRQNSTIPVTTDNAKNIVNASNA----AGLSPHIGCLAHTVNLASQKGLGVNQISRLLGRVRRVVTFFHRSTTAAAILKSKQDMLQLPPHKLVQDVITRWNSSYDMITRYLEQQAAVYSALAEKDIKKNAKDLITLSDQDVTVLEDVCQVLKPLKTVTTLMSSEQQPTVSMIMPLQHTILTSMKHSDTDSTIV----------------KDVKSAIEANFEERYSDP------------RLQQFLNE---STALDPRFKTLPHLDDKSRNEIFNCLE----EKILQEHP-TQSHASGEGSSQNPAEDQETV------ATSRGSPPAKRTALSELFGDFFSTASTASSSATKPWPDVVKD-EIQLYKMAKVI-------------SVDSNPLKWWKDNEHQYPHLSKLAKRYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLK 628 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14444.1 >prot_C-linearis_contig7.14444.1 ID=prot_C-linearis_contig7.14444.1|Name=mRNA_C-linearis_contig7.14444.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=569bp MVSALNKRAKVPSRRELLSRMRAVKTALENEVALMLDAEFVAITTDGWTSback to top mRNA from alignment at C-linearis_contig7:1845735..1847660+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14444.1 ID=mRNA_C-linearis_contig7.14444.1|Name=mRNA_C-linearis_contig7.14444.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1926bp|location=Sequence derived from alignment at C-linearis_contig7:1845735..1847660+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:1845735..1847660+ >mRNA_C-linearis_contig7.14444.1 ID=mRNA_C-linearis_contig7.14444.1|Name=mRNA_C-linearis_contig7.14444.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3414bp|location=Sequence derived from alignment at C-linearis_contig7:1845735..1847660+ (Chordaria linearis ClinC8C monoicous)back to top |