mRNA_C-linearis_contig7.14441.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14441.1
Unique NamemRNA_C-linearis_contig7.14441.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:1730184..1731074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.4729419-CDS-C-linearis_contig7:1730183..17304131622930273.4729419-CDS-C-linearis_contig7:1730183..1730413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1730184..1730413 -
1690880987.1601355-CDS-C-linearis_contig7:1730183..17304131690880987.1601355-CDS-C-linearis_contig7:1730183..1730413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1730184..1730413 -
1622930273.4847252-CDS-C-linearis_contig7:1731013..17310741622930273.4847252-CDS-C-linearis_contig7:1731013..1731074Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1731014..1731074 -
1690880987.179501-CDS-C-linearis_contig7:1731013..17310741690880987.179501-CDS-C-linearis_contig7:1731013..1731074Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1731014..1731074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14441.1prot_C-linearis_contig7.14441.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 1730184..1731074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14441.1

>prot_C-linearis_contig7.14441.1 ID=prot_C-linearis_contig7.14441.1|Name=mRNA_C-linearis_contig7.14441.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
QESLRSTFVGGCLGAPMASRGTRNSAAAAKSRGVEEGVKEKGGVTGGCKG
KAKAKPNTKAKPDGQQRALPAVAKVEREEEGMEGKRKDVSSALGDSE
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mRNA from alignment at C-linearis_contig7:1730184..1731074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14441.1 ID=mRNA_C-linearis_contig7.14441.1|Name=mRNA_C-linearis_contig7.14441.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=891bp|location=Sequence derived from alignment at C-linearis_contig7:1730184..1731074- (Chordaria linearis ClinC8C monoicous)
CAAGAGAGTCTGCGTTCAACTTTCGTGGGTGGGTGCCTTGGTGCACCCAT
GGCGAGTCGAGGTGAGGGGGGTGATGAGCAACGGGGTCGCCCTAGCGGTG
ATCCCGGTGCGATGTCGGCGGCCGGCGTGTCGCCGGCAGGTGGAGAGGGG
GCGAAGTTGACAGCAGCGGCGTTGTTGTCTTCTTCTCCCGAGGATGGGTC
AGGTGCAACCCCGGGTGGGGGAGCATCTGGCTCGGGAGAGGGGAAGATAG
AGGCTGAGGTCTCTGGTACAGACGACGAGCCGCGTCAGAGCGGGTCTGTC
GGTCTGGGGTCTGGACACGGTCCGGGGGGGAGTGTGTCTGGGGAGGGTAG
TGTGGGTGAGGATGAGTCTTCACGTGCATTTCCGTCCAGGGGGAGGGTAG
TTGAGCGCGGGTCGAAATTACGGCAACGCTCGGCGACACCCGCCCGGGGG
TCTAGGCGTCGGAGCGTTGATCAACAGATGACGCACGCACGACTAGAGAC
CGGTGAAGAGTTTGCGCAGTCGCGCAGGTCGGGCAGTGTTTCACACCGCA
GGAGAGAGGGTATGAAGGGTGCGAGAGCTGCACGGGTACGCAGTGGTGCT
GATGTTCCTAGGCCTGTTCCGACACCTCCTGTCATGAATTTGCCGCCGGT
TGCTGTTACAGGTACCAGAAACTCCGCTGCTGCAGCGAAGAGCAGGGGGG
TGGAAGAGGGCGTGAAGGAAAAGGGTGGTGTGACGGGCGGGTGTAAGGGC
AAGGCCAAGGCCAAACCCAATACCAAGGCCAAACCGGATGGGCAGCAGAG
GGCGCTGCCGGCAGTGGCCAAGGTGGAGCGTGAGGAGGAGGGGATGGAGG
GGAAGCGGAAGGACGTGTCGTCTGCGTTGGGTGATTCGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig7:1730184..1731074-

>mRNA_C-linearis_contig7.14441.1 ID=mRNA_C-linearis_contig7.14441.1|Name=mRNA_C-linearis_contig7.14441.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig7:1730184..1731074- (Chordaria linearis ClinC8C monoicous)
CAAGAGAGTCTGCGTTCAACTTTCGTGGGTGGGTGCCTTGGTGCACCCAT
GGCGAGTCGAGCAAGAGAGTCTGCGTTCAACTTTCGTGGGTGGGTGCCTT
GGTGCACCCATGGCGAGTCGAGGTACCAGAAACTCCGCTGCTGCAGCGAA
GAGCAGGGGGGTGGAAGAGGGCGTGAAGGAAAAGGGTGGTGTGACGGGCG
GGTGTAAGGGCAAGGCCAAGGCCAAACCCAATACCAAGGCCAAACCGGAT
GGGCAGCAGAGGGCGCTGCCGGCAGTGGCCAAGGTGGAGCGTGAGGAGGA
GGGGATGGAGGGGAAGCGGAAGGACGTGTCGTCTGCGTTGGGTGATTCGG
AGGTACCAGAAACTCCGCTGCTGCAGCGAAGAGCAGGGGGGTGGAAGAGG
GCGTGAAGGAAAAGGGTGGTGTGACGGGCGGGTGTAAGGGCAAGGCCAAG
GCCAAACCCAATACCAAGGCCAAACCGGATGGGCAGCAGAGGGCGCTGCC
GGCAGTGGCCAAGGTGGAGCGTGAGGAGGAGGGGATGGAGGGGAAGCGGA
AGGACGTGTCGTCTGCGTTGGGTGATTCGGAG
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