mRNA_C-linearis_contig7.14439.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14439.1
Unique NamemRNA_C-linearis_contig7.14439.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:1714168..1715931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1265
Cds size894
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14439.1prot_C-linearis_contig7.14439.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 1714168..1715562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.387189-CDS-C-linearis_contig7:1714167..17143181622930273.387189-CDS-C-linearis_contig7:1714167..1714318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1714168..1714318 -
1690880987.1239276-CDS-C-linearis_contig7:1714167..17143181690880987.1239276-CDS-C-linearis_contig7:1714167..1714318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1714168..1714318 -
1622930273.408103-CDS-C-linearis_contig7:1714819..17155621622930273.408103-CDS-C-linearis_contig7:1714819..1715562Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1714820..1715562 -
1690880987.1342676-CDS-C-linearis_contig7:1714819..17155621690880987.1342676-CDS-C-linearis_contig7:1714819..1715562Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 1714820..1715562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930273.4249644-UTR-C-linearis_contig7:1715562..17159311622930273.4249644-UTR-C-linearis_contig7:1715562..1715931Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1715563..1715931 -
1690880987.1437347-UTR-C-linearis_contig7:1715562..17159311690880987.1437347-UTR-C-linearis_contig7:1715562..1715931Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 1715563..1715931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14439.1

>prot_C-linearis_contig7.14439.1 ID=prot_C-linearis_contig7.14439.1|Name=mRNA_C-linearis_contig7.14439.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp
MTTMTTKTTTRGPTSPTLCPCRKPQLTRGVKPFKADLEDSLQQKGAFGIP
CNDTFRATTGATSAECALFFDTGWDGDELDPATAAALMTATLHHLSGTTP
GGEKNWSPPLVKRGKKPTTWDKVKFKGLKKPVLWALVKYYGADLNNLKNA
TTGSAFQLLTVGWQGDQLESTVVDFLHQTLAMVLLVGGEFERAEDEYPEQ
DDSSGDDTGSNSDKGKRKAAGASAHGRSKSKRKTRKPSRQAAEDDLTSQI
WSMAEDAAAQGKASRDDQAAYRKEKMDNEQLRWERHEAVRKEERDEAA
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mRNA from alignment at C-linearis_contig7:1714168..1715931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14439.1 ID=mRNA_C-linearis_contig7.14439.1|Name=mRNA_C-linearis_contig7.14439.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1764bp|location=Sequence derived from alignment at C-linearis_contig7:1714168..1715931- (Chordaria linearis ClinC8C monoicous)
AGGACAAGGCCGCCGCCAAGCTGGTCGATGCCATCGCCTCCAGCGCCAGC
CAGGTCAAGAAGGAGAAGGACGAATGTGAGGCGGCGGAGGAGATACGACA
AGCTATCATCCACAAGAGCCGCGACGACGGCATGAGGAACTGCCTGCCGG
CTTCGGGAGCGACGCCTTTCCCGAAACCGCGTTTCCAAACGGGACGTGGC
GGTGGCACGAGGCCTGGAGGTGGCGGAGGCAGCACTGGTGATCGTGCCGA
CGGTGCTGAGGGATGCACCGGCGTCAGCGGCGTCAGCAGCCGCAGTTTGT
CCATCAGCGGCGGCGGCGGCGGCGGTGGCAGCAGCCGTAACTCATCCATC
GGTGACGGCAACAGCGCCGATGACGACTATGACGACGAAGACGACGACTC
GGGGCCCTACGTCACCAACCCTCTGCCCCTGCAGAAAGCCCCAATTGACG
AGGGGCGTGAAGCCCTTCAAGGCAGACCTAGAGGATTCGCTTCAACAAAA
GGGAGCCTTCGGCATTCCTTGTAATGACACCTTTCGGGCTACGACCGGCG
CAACCTCCGCCGAGTGTGCCCTGTTCTTCGACACGGGGTGGGATGGCGAC
GAGCTCGACCCCGCCACCGCCGCGGCCTTGATGACAGCCACCCTCCACCA
CCTCTCCGGCACCACCCCAGGTGGAGAAAAAAACTGGAGTCCACCGCTGG
TGAAGAGGGGGAAGAAGCCGACGACGTGGGACAAAGTCAAGTTCAAGGGT
CTCAAGAAACCGGTGTTGTGGGCCCTCGTCAAGTACTACGGCGCCGACTT
AAACAACCTTAAGAACGCCACCACCGGGTCGGCGTTTCAGCTGCTTACTG
TCGGGTGGCAAGGGGACCAGCTGGAGTCGACCGTGGTAGACTTCCTACAC
CAAACCCTCGCGATGGTACTCCTGGTCGGTGGGGAGTTCGAGCGGGCGGA
GGACGAGTACCCCGAACAGGACGACAGTAGTGGCGACGACACCGGAAGCA
ACAGCGACAAGGGGAAGCGCAAAGCAGCAGGAGCATCGGCCCATGGGCGG
TCTAAGTCGAAGAGGAAAACCCGCAAACCGTCGCGGCAGGCCGCGGAAGA
TGACCTAACCAGGTGAGGGTAATACTGAGGCGCAAAGGCAGGCAACCGAG
AGGGGACACCATGCGTATGCGTGCATGCTTTTTTTTTTTTTTCTCTGCCC
ATTATTGGACTCTGTCGACTGCCCCTCTGGCCCCTATCCTCCACTTCTAC
TAGCTAGACGACCCAACCGGGGTCACACAGGAGGGGGGGGTTGGACCCCC
TCCTGCGGTACGTTGCCTTTGATATTTTTTGTCGAGAGCAGGGTTCAGCA
CTCCCTGCCCTCTCCGACTGTCTTTCAACATGTATCCCGATGCGTATTAC
ATTTATTTATAATTCATGAACATGTACACTTATGCAGGCATGAAACAGCA
CTTATGCAGGCATGAAACAGAAGCATGGCGTAAGGTGGTGTAGCCGCACA
GAATGCGGAAGCTATCATAGCCGCGACCGGGTCACGAGTAAGGAGCAGCT
ACCGCCTGACACCCAAATGCCGCTCGATCGTCCCGCTCCCGTGTTGTTTA
TTTATCTTCACAGCCAAATCTGGTCCATGGCGGAGGATGCGGCCGCTCAG
GGGAAAGCTAGTCGGGACGACCAGGCCGCGTACCGCAAGGAAAAAATGGA
CAACGAGCAGCTGCGGTGGGAGAGGCACGAGGCGGTCAGGAAGGAGGAGA
GGGACGAGGCTGCT
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Coding sequence (CDS) from alignment at C-linearis_contig7:1714168..1715931-

>mRNA_C-linearis_contig7.14439.1 ID=mRNA_C-linearis_contig7.14439.1|Name=mRNA_C-linearis_contig7.14439.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at C-linearis_contig7:1714168..1715931- (Chordaria linearis ClinC8C monoicous)
ATGACGACTATGACGACGAAGACGACGACTCGGGGCCCTACGTCACCAAC
CCTCTGCCCCTGCAGAAAGCCCCAATTGACGAGGGGCGTGAAGCCCTTCA
AGGCAGACCTAGAGGATTCGCTTCAACAAAAGGGAGCCTTCGGCATTCCT
TGTAATGACACCTTTCGGGCTACGACCGGCGCAACCTCCGCCGAGTGTGC
CCTGTTCTTCGACACGGGGTGGGATGGCGACGAGCTCGACCCCGCCACCG
CCGCGGCCTTGATGACAGCCACCCTCCACCACCTCTCCGGCACCACCCCA
GGTGGAGAAAAAAACTGGAGTCCACCGCTGGTGAAGAGGGGGAAGAAGCC
GACGACGTGGGACAAAGTCAAGTTCAAGGGTCTCAAGAAACCGGTGTTGT
GGGCCCTCGTCAAGTACTACGGCGCCGACTTAAACAACCTTAAGAACGCC
ACCACCGGGTCGGCGTTTCAGCTGCTTACTGTCGGGTGGCAAGGGGACCA
GCTGGAGTCGACCGTGGTAGACTTCCTACACCAAACCCTCGCGATGGTAC
TCCTGGTCGGTGGGGAGTTCGAGCGGGCGGAGGACGAGTACCCCGAACAG
GACGACAGTAGTGGCGACGACACCGGAAGCAACAGCGACAAGGGGAAGCG
CAAAGCAGCAGGAGCATCGGCCCATGGGCGGTCTAAGTCGAAGAGGAAAA
CCCGCAAACCGTCGCGGCAGGCCGCGGAAGATGACCTAACCAGATGACGA
CTATGACGACGAAGACGACGACTCGGGGCCCTACGTCACCAACCCTCTGC
CCCTGCAGAAAGCCCCAATTGACGAGGGGCGTGAAGCCCTTCAAGGCAGA
CCTAGAGGATTCGCTTCAACAAAAGGGAGCCTTCGGCATTCCTTGTAATG
ACACCTTTCGGGCTACGACCGGCGCAACCTCCGCCGAGTGTGCCCTGTTC
TTCGACACGGGGTGGGATGGCGACGAGCTCGACCCCGCCACCGCCGCGGC
CTTGATGACAGCCACCCTCCACCACCTCTCCGGCACCACCCCAGGTGGAG
AAAAAAACTGGAGTCCACCGCTGGTGAAGAGGGGGAAGAAGCCGACGACG
TGGGACAAAGTCAAGTTCAAGGGTCTCAAGAAACCGGTGTTGTGGGCCCT
CGTCAAGTACTACGGCGCCGACTTAAACAACCTTAAGAACGCCACCACCG
GGTCGGCGTTTCAGCTGCTTACTGTCGGGTGGCAAGGGGACCAGCTGGAG
TCGACCGTGGTAGACTTCCTACACCAAACCCTCGCGATGGTACTCCTGGT
CGGTGGGGAGTTCGAGCGGGCGGAGGACGAGTACCCCGAACAGGACGACA
GTAGTGGCGACGACACCGGAAGCAACAGCGACAAGGGGAAGCGCAAAGCA
GCAGGAGCATCGGCCCATGGGCGGTCTAAGTCGAAGAGGAAAACCCGCAA
ACCGTCGCGGCAGGCCGCGGAAGATGACCTAACCAGCCAAATCTGGTCCA
TGGCGGAGGATGCGGCCGCTCAGGGGAAAGCTAGTCGGGACGACCAGGCC
GCGTACCGCAAGGAAAAAATGGACAACGAGCAGCTGCGGTGGGAGAGGCA
CGAGGCGGTCAGGAAGGAGGAGAGGGACGAGGCTGCTCCAAATCTGGTCC
ATGGCGGAGGATGCGGCCGCTCAGGGGAAAGCTAGTCGGGACGACCAGGC
CGCGTACCGCAAGGAAAAAATGGACAACGAGCAGCTGCGGTGGGAGAGGC
ACGAGGCGGTCAGGAAGGAGGAGAGGGACGAGGCTGCT
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