mRNA_C-linearis_contig112.1550.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig112.1550.1 vs. uniprot
Match: D7FVT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT4_ECTSI) HSP 1 Score: 650 bits (1677), Expect = 1.690e-216 Identity = 524/994 (52.72%), Postives = 571/994 (57.44%), Query Frame = 1
Query: 85 DGNGHA-GTNGWSAHVRYFLARYPLEARDFVAQRLAAYGIRSLLSSHRMENLTLDTLLSATDAADRDVLSLMRQHARGRREQRGGLHRSAAPASPRRSRVGVPSPQRRHQPHAIDDSSQAPREALRERGIT-RNTNATPPSRMASALRPGAAGS----RKRHEIVGRPDVLTRYPFVDDLGNKQGGGVGAVMHRATPTTPIQYLAKREIRRLAHEAFRELKASALGIRLSDLPCALQFLFFGDSASLLTAKGGXXXXXXXXXX-VRAMGRSGKDVHLVMALARECLPPTLAHAARDTSTLSSASTQRGAEEG-WARDGQNMFISERRWIKIVAHVIRRLWDMDGPPSSFLAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPLGMDFQQPVWRPVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GGLTADXXXXXXXXXXXXXXXXXPSAISADDVDGDYYGRGGGGEGEDEAGEALRAWEEEGESWVGAGRSLAWAPPGEED----GEVGGVGEDGSSQGAGEGRLAXXXXXXXXXXXXXXXXXXXXXXXXXARRSAVKDVVARRRLGHLETG---------------------GXXXXRKDSSASDCNSQPRGHTPGEHALDIAGAFLESSLMTRLAGGDWFDSEDGEPTSSFSSA-WETEEAVRVPPGXXXXXXXXXXXXXXXXXXX--------RNESPRREDGGHGVPATRRRQAYTGWLGDFGPVHTHTVREVAGTGDEEEE-----------DGRXXXXXXXXXXXXXRDRG-SGPRPAGQEEEDGKERTRRSWRLDE---GGAPSGGGDVVERSEGTEKDGGVDESTAAVDSVAPRVGGADATLPGAADSSSDIPETGADDGNDSNDEVENMGTAETGDVNVVAPLDGGLDAYLQLASDSGALHRGG----------GGRLGRGDGGGTAXXXXXXXXXXXXXXXXXXXXXTSGSWWEEDRSEVSTSPV 2859
DG GH G +GWSAHVRYFLARYP E RD VAQRLA+YGIRSLLSSHR ENL+LD LL+ATDAADR+VLS MR+HARGR +QRG +AAP RSR P Q+R P A ++ AP E LRER + +N +A PP GAAG+ RKRH + RPDVLTRYPFVDDL QGGGVGAVMH+ATPTTPIQYLAKREIRRLAHEAFRELKASALGIRLSDLPCALQFLFFGDSASLLT+KG XXXXXXXXXX R RS KDVHLVMALARECLPPTLAHAARDTSTLS+ASTQ GAE G W RDGQNMF+SERRWIK+VAHVIRRLWDMDG P +AA XXXXXXXXXXXXXXXXXXX A P GM+FQQPVW+PVGG XXXXXXXXXXXXXX GGL AD S ISA D DG Y G EALRAWEE E WVGAGRS+A AP E++ GE GG+ GA G ARRSAV+D VARRRL L+ G G S A++ +S RGHTPGEHALDIAGAFLESSLMTRLAGGDWFD EDG+ S+ SSA WE E AVR P G RN RR DGG RR+A+TGWLGDFGPVHTHTVREVAG +EEEE DGR RD G S PR G + R +E GG GG V SE + GVDEST A + + PG S+S D G +G ETGD NVVAPLDGGLDAYLQLASD GA GGR G G GGG+ TSGSWWEEDRS + V
Sbjct: 26 DGIGHGRGLDGWSAHVRYFLARYPPETRDLVAQRLASYGIRSLLSSHRQENLSLDALLAATDAADREVLSSMREHARGRHKQRG----AAAPLC--RSRTSSPQRQQRQHPRANGGNAAAPTEVLRERVLADKNIDAGPP---------GAAGAVTVFRKRHVVAARPDVLTRYPFVDDLAATQGGGVGAVMHQATPTTPIQYLAKREIRRLAHEAFRELKASALGIRLSDLPCALQFLFFGDSASLLTSKGXXXXXXXXXXXXARGAKRSAKDVHLVMALARECLPPTLAHAARDTSTLSTASTQGGAEAGGWMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPED-VAAXXXXXXXXXXXXXXXXXXXXAGPSRKPATVAATAAPFGMEFQQPVWKPVGGRRGSVAXXXXXXXXXXXXXXRFLRGGEAENVTSAESFLGGLEADSRSDTTGWGGFSAA----SRISASDGDGGPYPGEGXXXXXXXXXEALRAWEEA-EDWVGAGRSIARAPGEEQEEHARGEAGGLFAAPRGLGAVHGSRRRRKQSGGAGDAGRIAG---------ARRSAVRDTVARRRLDRLDRGSSLGDATQGFPADGRSGVSGDGDRDRGGSSLAAEWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFDGEDGDQISAGSSAAWEPEGAVRGPLGGGPRQTHRPGGALRGRYDSGGGGGSRSRNGLSRR-DGGQ---RAGRREAHTGWLGDFGPVHTHTVREVAGDVEEEEEXXXXXXXXXXGDGRAWGTASR------RDGGVSPPRDHGGSDGGTTSRQGSGGHAEEKGRGGVGEGGSGDVSASEDVREGRGVDESTGAARGSDGGGATREGSDPGGGGSTSPNXXXXXDVG---------LGQGETGDFNVVAPLDGGLDAYLQLASDGGAXXXXXXXXXXXXXXXGGREGPGLGGGSPGGYTGA---------------TSGSWWEEDRSALEGGDV 955
BLAST of mRNA_C-linearis_contig112.1550.1 vs. uniprot
Match: A0A6H5JP21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP21_9PHAE) HSP 1 Score: 610 bits (1572), Expect = 5.750e-200 Identity = 513/1073 (47.81%), Postives = 578/1073 (53.87%), Query Frame = 1
Query: 61 ASRHHHQH-----DGNGHA-GTNGWSAHVRYFLARYPLEARDFVAQRLAAYGIRSLLSSHRMENLTLDTLLSATDAADRDVLSLMRQHARGRREQRGGLHRSAAPASPRRSRVGVPSPQRRHQPHAIDDSSQ--APREALRERGIT-RNTNATPPSRMASALRPGAAGS----RKRHEIVGRPDVLTRYPFVDDLGNKQGGGVGAVMHRATPTTPIQYLAKREIRRLAHEAFRELKASALGIRLSDLPCALQFLFFGDSASLLTAKGGXXXXXXXXXXVRAMGRSGKDVHLVMALARECLPPTLAHAARDTSTLSSASTQRGAEEGWARDGQNMFISERRWIKIVAHVIRRLWDMDGPPSSFLAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPLGMDFQQPVWRPVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLTADXXXXXXXXXXXXXXXXXPSAISADDVDGDYY-GRGGGGEGEDEAGEALRAWEEEGESWVGAGRSLAWAPPGEED-----------------GEV-------------GGVG----------------EDGS----------------SQGAGEGRL----------AXXXXXXXXXXXXXXXXXXXXXXXXXARRSAVKDVVARRRLGHLETGGXXXX-----------------RKD------SSASDCNSQPRGHTPGEHALDIAGAFLESSLMTRLAGGDWFDSEDGEPTSSFSSA-WETEEAVRVPPGXXXXXXXXXXXXXXXXXXX--------RNESPRREDGGHGVPATRRRQAYTGWLGDFGPVHTHTVREVAGTGDEEEEDGRXXXXXXXXXXXXX----RDRG-SGPRPAGQEEEDGKERTRRSWRLDEGGAPS-GGGDVVERSEG----------------TEKDGGVDESTAAVDSVAPRVGGADATLPGAADSSSDIPETGADDGNDSNDEVENMGTAETGDVNVVAPLDGGLDAYLQLASDSGALHRGGGGRLGRGDGGGTAXXXXXXXXXXXXXXXXXXXXXTSGSWWEEDRSEVSTSPV 2859
ASR+H H DG GH G +GWSAHVRYFLARYP E RD VAQRLA+YGIRSLLSSHR ENL+L+ LL+ATDAADR+VLS MR+HARGR++QRG S RSR+ S QR+ + H+ D+ AP E LRER + +N +A+PP+ AAG+ RKRH + RPDVLTRYPFVDDL QGGGVGAVMH+ATPTTPIQYLAKREIRRLAHEAFRELKASALGIRLSDLPCALQFLFFGDSASLLT+KGG XXXXXXX RS KDVHLVMALARECLPPTLAHAARDTSTLS+ASTQ G+E GW RDGQNMF+SERRWIK+VAHVIRRLWDMDG P +AA XXXXXXXXXXXXXXXXX A P GM+FQQPVW+ GG GGL D S ISA D DG Y G G GG+ + EALRAWEE E WVGAGRS+A AP E++ G V GG G ++G+ S G GR A ARRSAV+D VARRRL L+ GG KD S A++ +S RGHTPGEHALDIAGAFLESSLMTRLAGGDWFD ED E S+ SSA WE E AVRVP G RN RR+DG RR+A+TGWLGDFGP HTHTVREVAG +EEEE+GR XXXXX RD G S PR G G + + S ++ EG A GGG R++G + GVDEST A GG D T G+ + T N+++D +G AE GD NVVAPLDGGLDAYLQL SD A+ XXXX XX TSGSWWEEDRS + V
Sbjct: 23 ASRNHGYHNGGGFDGVGHGRGLDGWSAHVRYFLARYPPETRDVVAQRLASYGIRSLLSSHRQENLSLEALLAATDAADREVLSSMREHARGRQKQRGAAALS-------RSRMS--SAQRQQRQHSRDNGGNGAAPTEVLRERVLADKNIDASPPA---------AAGAVTVFRKRHVVAARPDVLTRYPFVDDLAATQGGGVGAVMHQATPTTPIQYLAKREIRRLAHEAFRELKASALGIRLSDLPCALQFLFFGDSASLLTSKGGGSRXXXXXXXXXGANRSAKDVHLVMALARECLPPTLAHAARDTSTLSTASTQGGSEAGWMRDGQNMFVSERRWIKVVAHVIRRLWDMDGRPED-VAAXXXXXXXXXXXXXXXXXXAAAGPSRKPAAVPATAAPFGMEFQQPVWKRGGGGRYLRVTRADSFV-----------------------GGLEEDSRSDTTRWGGFSET----SRISASDGDGGPYPGEGVGGDDD----EALRAWEEA-EDWVGAGRSIARAPGEEQEDYAQEEAGDLFAAARGLGAVHGSSRRRTQSAGAGGAGXXXXXXXXXXXSGADWKEGTRPAGMWEVSPPAHVVASSRTGRGRRGQGARRESGPAYLRGVQSRIRPQLDAHKDRLRKIAGARRSAVRDTVARRRLDRLDRGGNPGDVTQGFPADGRSGVSGDRDKDRDRGGYSLATEWDSNARGHTPGEHALDIAGAFLESSLMTRLAGGDWFDGEDSEQISAGSSAAWEPEGAVRVPLGGGLRQTNHPGGALRGRYDSGGGGGSRSRNGLSRRDDG----QRAGRREAHTGWLGDFGPAHTHTVREVAGDVEEEEEEGRGXXXXXGDGRAWGTASRRDGGVSPPRDRG-----GSDGSTTSRQVSEGPAEEKGGGGKGGRADGGVGGXXXRGEXXXXXXXREXXGVDESTGAARGSD---GGGD-TQEGSGSNGRGNTST-----NENDDADIGLGQAEMGDFNVVAPLDGGLDAYLQLVSDGRAVAGXXXXXXXX-----XXXXXXREGPALGXXSPGGYTGATSGSWWEEDRSALEGGDV 1021
BLAST of mRNA_C-linearis_contig112.1550.1 vs. uniprot
Match: A0A835Z222_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z222_9STRA) HSP 1 Score: 129 bits (323), Expect = 3.110e-27 Identity = 108/355 (30.42%), Postives = 159/355 (44.79%), Query Frame = 1
Query: 127 VRYFLARYPLEARDFVAQRLAAYGIRSLLSSHRMENL--TLDTLLSATDAADRDVLSLMRQHARGRREQRGGLHRSAAPASPRRSRVGVPSPQRRHQPHAIDDSSQAPREALRERGITRNTNATPPSRMASALRPGAAGSRKRHEIVGRPDVLTRYPFVDDLGNKQGGGVGAVMHRATPTTPIQYLAKREIRRLAHEAFRELKASALGIRLS--------------DLPCALQFLFFGDSASLLTAKGGXXXXXXXXXXVRAMGRSGKDVHLVMALARECLPPTLAHAARDTSTLSSASTQRGAEE---GWARDG--------------QNMFISERRWIKIVAHVIRRLWDMDG 1092
+R+ LA++P E + + + LA +G+R LL +HR+++L +L+AT+AA R+V +++R+H+ + P R++ +RR TR+ + T P S ++ GSR+ + RPDVL +YPFVD GN VG ++ TTP LAKREIRRLA AF E ++SA GIRL D C D S L+A G A + +HL++ALA+E LP +L RDTS L ST G D + + + W ++VAHV+RRLW M+G
Sbjct: 12 LRHVLAKFPREQKTVIEECLAWHGLRVLLQAHRLDDLLGNASAVLAATEAARREVHAILREHS------------TRGPRPTARTKAATAVAKRR----------------------TRSASPTTPRLPRSPVKGTLRGSRQPD--IPRPDVLAKYPFVDGQGN-----VGEILACPPRTTPFHRLAKREIRRLAKAAFMEYRSSAHGIRLHAPPQIAPTGITPLFDARCRTSTPRLRDFKSALSALFG-----------EATYSACGGMHLILALAQEALPHSLQLVLRDTSDLGDVSTAPSVATFGMGLTEDNIEVPGNTHPVKVPRNDAAVDQSEWTRLVAHVVRRLWQMEG 314 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1550.1 >prot_C-linearis_contig112.1550.1 ID=prot_C-linearis_contig112.1550.1|Name=mRNA_C-linearis_contig112.1550.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=954bp MEAARRPSTAARVRKQPKIGASRHHHQHDGNGHAGTNGWSAHVRYFLARYback to top mRNA from alignment at C-linearis_contig112:420410..427479- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1550.1 ID=mRNA_C-linearis_contig112.1550.1|Name=mRNA_C-linearis_contig112.1550.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7070bp|location=Sequence derived from alignment at C-linearis_contig112:420410..427479- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:420410..427479- >mRNA_C-linearis_contig112.1550.1 ID=mRNA_C-linearis_contig112.1550.1|Name=mRNA_C-linearis_contig112.1550.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5724bp|location=Sequence derived from alignment at C-linearis_contig112:420410..427479- (Chordaria linearis ClinC8C monoicous)back to top |