mRNA_C-linearis_contig112.1541.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1541.1
Unique NamemRNA_C-linearis_contig112.1541.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5KQR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.420e-21
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = -1 
Query:  256 FGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 450
            FGFNGGCIAPRWRD T+PW MAA  AKRAVP N  A +PG +PPAPADPGVFS       A  W+
Sbjct:  172 FGFNGGCIAPRWRDSTLPWMMAALAAKRAVPENTVAGVPGEMPPAPADPGVFSHSNPTARASNWA 236
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5JI64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI64_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.030e-19
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = -1 
Query:  256 SKFGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 456
            + FG NGGC+APRWRDGT PWT+A   AKRAVPSN  A LPGA+PPAP DPG FS       A  W+
Sbjct:  462 TDFGLNGGCLAPRWRDGTKPWTLAHLAAKRAVPSNSSAGLPGAVPPAPTDPGAFSHSKPTARASNWA 528
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5KN91_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN91_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-18
Identity = 44/65 (67.69%), Postives = 45/65 (69.23%), Query Frame = -1 
Query:  256 FGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 450
            FGFN GCIAPRWRD  M WT+A   AKRAVPSN  A LPGALP APADPGVFS       A  WS
Sbjct:  119 FGFNPGCIAPRWRDEEMSWTLAPLAAKRAVPSNTSAGLPGALPQAPADPGVFSHSKPTARASNWS 183
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5KE23_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE23_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.970e-18
Identity = 42/65 (64.62%), Postives = 45/65 (69.23%), Query Frame = -1 
Query:  256 FGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 450
            FGFNGGC+A R RDG MPWT+A    KRAVPSN  A LPGALPPAPADPG FS       A  W+
Sbjct:   63 FGFNGGCLATRCRDGAMPWTLAHLAVKRAVPSNSSAGLPGALPPAPADPGAFSHSKPTARASNWA 127
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.660e-17
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = -1 
Query:  256 SKFGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 456
            + FGFNGGCIA RWRD T PWTM    AKRA P+N  A +PG +PPAP DPGVFS          W+
Sbjct:  429 TDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGDMPPAPTDPGVFSHSKPTARVSNWA 495
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.720e-16
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = -1 
Query:  256 SKFGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 456
            + FG NGGCIA RWRD T PWTM    AKRA P+N  A +PG +PPAP DPGVFS       A  W+
Sbjct:  480 TDFGLNGGCIASRWRDSTQPWTMEHLTAKRAAPANTAAGVPGDMPPAPMDPGVFSHSKPTARASNWA 546
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5KKK0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.060e-15
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = -1 
Query:  256 SKFGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 456
            + FGFNGGCIA RWRD T PWTM    AKRA P+N  A +PG +PPAP DP  FS          W+
Sbjct:  223 TDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGGMPPAPVDPVFFSNSKPTARVSNWA 289
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5JPJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.550e-14
Identity = 35/67 (52.24%), Postives = 40/67 (59.70%), Query Frame = -1 
Query:  256 SKFGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 456
            +  GF G CIAPRWRDG MPWTMA   AK AV +     +PG +P  PADPGVFS       A  W+
Sbjct:  178 ADLGFTGACIAPRWRDGIMPWTMAPLAAKPAVLATTATGVPGEMPAPPADPGVFSHSKTTVRASAWA 244
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5KGZ7_9PHAE (MULE domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.580e-14
Identity = 35/67 (52.24%), Postives = 40/67 (59.70%), Query Frame = -1 
Query:  256 SKFGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGVFSRDIFVDLAGLWS 456
            +  GF G CIAPRWRDG MPWTMA   AK AV +     +PG +P  PADPGVFS       A  W+
Sbjct:  369 ADLGFTGACIAPRWRDGIMPWTMAPLAAKPAVLATTATGVPGEMPAPPADPGVFSHSKTTVRASAWA 435
[Close]
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Match: A0A6H5L517_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L517_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.800e-10
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = -1 
Query:  298 SKFGFNGGCIAPRWRDGTMPWTMAAFFAKRAVPSNIGAELPGALPPAPADPGV 456
            +  GF G CIAPRWRDG MPWTMA   AK AV +     +PG +P  PAD G+
Sbjct:   92 ADLGFTGACIAPRWRDGIMPWTMAPLAAKPAVLATTATGVPGEMPAPPADSGI 144
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KQR1_9PHAE3.420e-2166.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI64_9PHAE1.030e-1962.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN91_9PHAE1.400e-1867.69SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KE23_9PHAE2.970e-1864.62SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KFX3_9PHAE6.660e-1756.72SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYV9_9PHAE1.720e-1656.72SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKK0_9PHAE2.060e-1553.73SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JPJ2_9PHAE3.550e-1452.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGZ7_9PHAE7.580e-1452.24MULE domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5L517_9PHAE5.800e-1054.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:361472..362161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927486.228428-CDS-C-linearis_contig112:361471..3616491622927486.228428-CDS-C-linearis_contig112:361471..361649Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 361472..361649 -
1690879728.356695-CDS-C-linearis_contig112:361471..3616491690879728.356695-CDS-C-linearis_contig112:361471..361649Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 361472..361649 -
1622927486.2405634-CDS-C-linearis_contig112:361883..3621611622927486.2405634-CDS-C-linearis_contig112:361883..362161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 361884..362161 -
1690879728.3658204-CDS-C-linearis_contig112:361883..3621611690879728.3658204-CDS-C-linearis_contig112:361883..362161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 361884..362161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1541.1prot_C-linearis_contig112.1541.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 361472..362161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1541.1

>prot_C-linearis_contig112.1541.1 ID=prot_C-linearis_contig112.1541.1|Name=mRNA_C-linearis_contig112.1541.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
VHCFRASDEGGSDALDFISRGTAMSGESETHGEESHGQGEEDMLVIDIGD
DTTADSNGGGLGDGTAPPAPSTAPPAPRSTCCPGAAPQASQVHEYVAGEN
ARIRRSGRQRSGKLGTYVRWHRTLREEGCHRPRHSTVTPAGCNTPSVEPE
F*
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mRNA from alignment at C-linearis_contig112:361472..362161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1541.1 ID=mRNA_C-linearis_contig112.1541.1|Name=mRNA_C-linearis_contig112.1541.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at C-linearis_contig112:361472..362161- (Chordaria linearis ClinC8C monoicous)
GTTCATTGCTTCCGCGCGAGCGATGAAGGTGGAAGTGATGCGTTGGATTT
CATCTCGCGCGGGACAGCAATGAGTGGGGAGTCAGAGACGCATGGTGAGG
AAAGTCATGGTCAAGGGGAAGAGGACATGTTGGTGATAGACATTGGCGAT
GACACCACCGCTGACAGCAACGGAGGAGGACTTGGCGATGGCACCGCCCC
GCCAGCTCCAAGCACCGCTCCGCCAGCTCCAAGAAGCACCTGTTGTCCTG
GAGCAGCTCCACAGGCCAGCCAAGTCCAGTTGAGCAGATCCCAATGTTCG
ATGTCGTGTAATTGTTGACCGCCTCATATACACTAGACAGATCACACGTC
GTCCGTGCATGCATGCAGTTTTTCTGTGGGCACTAGCTGCACGCAGTTCC
GCATGTCGATCCGATTTCTCATTTTCAACGCATTCAGAGCAGGCTCGGCC
CTTCCGTGCATACTTCTATGCAATAATGGATCGCCCCGTGCGGTTGACGT
TGGAATGTGCAGCGAATATGTCGCGGGAGAAAACGCCAGGATCCGCAGGA
GCGGGCGGCAGCGCTCCGGGAAGCTCGGCACCTATGTTCGATGGCACCGC
ACGCTTCGCGAAGAAGGCTGCCATCGTCCACGGCATAGTACCGTCACGCC
AGCGGGGTGCAATACACCCTCCGTTGAACCCGAATTTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig112:361472..362161-

>mRNA_C-linearis_contig112.1541.1 ID=mRNA_C-linearis_contig112.1541.1|Name=mRNA_C-linearis_contig112.1541.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig112:361472..362161- (Chordaria linearis ClinC8C monoicous)
GTTCATTGCTTCCGCGCGAGCGATGAAGGTGGAAGTGATGCGTTGGATTT
CATCTCGCGCGGGACAGCAATGAGTGGGGAGTCAGAGACGCATGGTGAGG
AAAGTCATGGTCAAGGGGAAGAGGACATGTTGGTGATAGACATTGGCGAT
GACACCACCGCTGACAGCAACGGAGGAGGACTTGGCGATGGCACCGCCCC
GCCAGCTCCAAGCACCGCTCCGCCAGCTCCAAGAAGCACCTGTTGTCCTG
GAGCAGCTCCACAGGCCAGCCAAGTCCAGTTCATTGCTTCCGCGCGAGCG
ATGAAGGTGGAAGTGATGCGTTGGATTTCATCTCGCGCGGGACAGCAATG
AGTGGGGAGTCAGAGACGCATGGTGAGGAAAGTCATGGTCAAGGGGAAGA
GGACATGTTGGTGATAGACATTGGCGATGACACCACCGCTGACAGCAACG
GAGGAGGACTTGGCGATGGCACCGCCCCGCCAGCTCCAAGCACCGCTCCG
CCAGCTCCAAGAAGCACCTGTTGTCCTGGAGCAGCTCCACAGGCCAGCCA
AGTCCACGAATATGTCGCGGGAGAAAACGCCAGGATCCGCAGGAGCGGGC
GGCAGCGCTCCGGGAAGCTCGGCACCTATGTTCGATGGCACCGCACGCTT
CGCGAAGAAGGCTGCCATCGTCCACGGCATAGTACCGTCACGCCAGCGGG
GTGCAATACACCCTCCGTTGAACCCGAATTTTGACGAATATGTCGCGGGA
GAAAACGCCAGGATCCGCAGGAGCGGGCGGCAGCGCTCCGGGAAGCTCGG
CACCTATGTTCGATGGCACCGCACGCTTCGCGAAGAAGGCTGCCATCGTC
CACGGCATAGTACCGTCACGCCAGCGGGGTGCAATACACCCTCCGTTGAA
CCCGAATTTTGA
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