mRNA_C-linearis_contig112.1538.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1538.1
Unique NamemRNA_C-linearis_contig112.1538.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: A0A6H5KV08_9PHAE (cobW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV08_9PHAE)

HSP 1 Score: 428 bits (1100), Expect = 1.450e-146
Identity = 222/250 (88.80%), Postives = 231/250 (92.40%), Query Frame = 2
Query:  128 HGDEEPSASTQS--LAEHGXXXEHMDHPGFFADREPLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYEATKAAAAST 871
            HG EE  A +Q+   AEHG   EHMDHPGFFADREP QP RAL+ER+YTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARH+ DI+LVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKG GV +IK LIL+ YEA K +AAST
Sbjct:   30 HGKEEHPADSQNPTFAEHGHTHEHMDHPGFFADREPPQPDRALAERSYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHETDIILVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGVGVGEIKALILKHYEAAKDSAAST 279          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: A0A836CD81_9STRA (Urease accessory protein ureG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD81_9STRA)

HSP 1 Score: 333 bits (855), Expect = 2.060e-109
Identity = 169/218 (77.52%), Postives = 186/218 (85.32%), Query Frame = 2
Query:  191 HMDHPGFFADREPLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYE 844
            H++H G F +REP    R L +RA+TVGIGGPVGSGKTALMLELCK LRD  SI AVTNDIFTREDAEFLT+N+AL E RI AIETGGCPHAAIREDISANL ACE +T RH  DIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDL VINK DLA+AVGADL VMRR++ +MRG+G T+FAQVK G GV+DI K IL  ++
Sbjct:   49 HLEHAGCFHEREPPLNSRDLKDRAFTVGIGGPVGSGKTALMLELCKRLRDNYSIAAVTNDIFTREDAEFLTRNAALAEDRIAAIETGGCPHAAIREDISANLSACEIMTTRHACDIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLFVINKIDLADAVGADLAVMRRDSLLMRGDGPTVFAQVKHGVGVDDIVKYILSDHK 266          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: A0A162U528_PHYB8 (cobW domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162U528_PHYB8)

HSP 1 Score: 322 bits (824), Expect = 8.340e-105
Identity = 169/248 (68.15%), Postives = 194/248 (78.23%), Query Frame = 2
Query:  119 GHQHGDEEPSASTQSLAEHGXXXEHMDHPGFFADR-EPLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYEATKAA 859
            GH+HG       TQ   EHG   E MDHPG +A+R + +  HR  SERA+TVGIGGPVGSGKTALML LC+ LR++ S+ AVTNDIFT+ED EFL +  AL E RI+AIETGGCPHAAIRED+SANL A E L A+    ++L+ESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLV+NKTDLAE +GADL VM R+AK MRG G T+FAQVK G  V+DI  LIL  + A+ AA
Sbjct:   34 GHEHG----GRGTQ---EHGHTHEQMDHPGHYAERPKAIYNHRDWSERAFTVGIGGPVGSGKTALMLALCQRLREKYSVAAVTNDIFTKEDTEFLVREKALPEERIMAIETGGCPHAAIREDVSANLNALEVLHAKFNTQLLLIESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVVNKTDLAEIIGADLGVMARDAKKMRGNGPTVFAQVKNGVAVDDIINLILGEWRASGAA 274          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: A0A261Y2A4_9FUNG (Putative urease accessory protein ureG-like n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y2A4_9FUNG)

HSP 1 Score: 321 bits (822), Expect = 1.360e-104
Identity = 164/231 (71.00%), Postives = 189/231 (81.82%), Query Frame = 2
Query:  170 EHGXXXEHMDHPGFFADREPLQ-PHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYEATKAA 859
            EHG   E +DHPGF+A+R P+    R+  ERA+TVGIGGPVGSGKTALML LC+ LR++ SI AVTNDIFT+ED EFL +N AL E RI AIETGGCPHAAIRED+SANL A E L A+    ++L+ESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLL+INKTDLA+ VGADL VM R+AK MRG G T+FAQVK G GV++I  LIL  ++A+ AA
Sbjct:   38 EHGHTHEQLDHPGFYAERPPVNYGDRSWRERAFTVGIGGPVGSGKTALMLALCQRLREQYSIAAVTNDIFTKEDTEFLIRNKALPEERIAAIETGGCPHAAIREDVSANLNALEKLHAKFNTQLLLIESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLIINKTDLADIVGADLSVMDRDAKKMRGSGPTVFAQVKNGVGVDEIISLILGEWKASGAA 268          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: A0A5D6XFG9_9STRA (cobW domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFG9_9STRA)

HSP 1 Score: 316 bits (810), Expect = 5.290e-103
Identity = 162/232 (69.83%), Postives = 186/232 (80.17%), Query Frame = 2
Query:  158 QSLAEHGXXXEHMDHPGFFADREPLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYEATK 853
            + L EHG   EH +H G F +REP +  R   +RA+TVGIGGPVGSGKTALML LC+ L+D LS+ AVTNDIFTRED EFL +++AL E RI AIETGGCPHAAIREDISANL ACE LT    A IVLVESGGDNLAAN+SRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  V ADL VM R+AK+MRG G T+F+Q+  G+GV +I   I+ A++ATK
Sbjct:   25 RQLREHGHTHEHFEHAGRFDEREPARGRRDWRQRAFTVGIGGPVGSGKTALMLALCRELKDRLSLAAVTNDIFTREDGEFLVRHAALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAKIVLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVHADLGVMDRDAKLMRGAGPTVFSQINAGKGVAEIVAFIMRAFDATK 256          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: A0A367KWJ6_RHIST (cobW domain-containing protein n=2 Tax=Mucorineae TaxID=1344963 RepID=A0A367KWJ6_RHIST)

HSP 1 Score: 316 bits (809), Expect = 1.250e-102
Identity = 166/262 (63.36%), Postives = 199/262 (75.95%), Query Frame = 2
Query:  134 DEEPSASTQSLAEHGXXXEH----------------MDHPGFFADR-EPLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYEATKAAAAS 868
            +E PS++T +L +HG    H                MDHPG + +R + +  +R  SERA+TVGIGGPVGSGKTALML LC+ LRD+ S+ AVTNDIFT+ED EFL +N+AL   RI AIETGGCPHAAIRED+SANL A ETL ++    ++L+ESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLL+INKTDLA  VGADL+VM R+AK MRG+G T+FAQVK G G+++I  LIL  + A+ AA  S
Sbjct:    8 EEHPSSNTSALHDHGDGHVHTHGGHDXXXXXXXHEQMDHPGLYQERPKAIYDNRDWSERAFTVGIGGPVGSGKTALMLALCQRLRDQYSLAAVTNDIFTKEDTEFLIRNAALPTDRIAAIETGGCPHAAIREDVSANLNALETLHSKFDTQLLLIESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLIINKTDLAPIVGADLDVMARDAKKMRGDGPTVFAQVKNGVGMDEIISLILGEWRASGAAKES 269          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: K3X4S2_GLOUD (cobW domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4S2_GLOUD)

HSP 1 Score: 315 bits (806), Expect = 1.410e-102
Identity = 160/233 (68.67%), Postives = 188/233 (80.69%), Query Frame = 2
Query:  158 QSLAEHGXXXEHMDHPGFFADREPLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYEATKA 856
            + L EHG   EH +H G F +R+P+   R  S RA+TVGIGGPVGSGKTALML LC+ L+D+ SI AVTNDIFTRED EFL ++ AL E RI AIETGGCPHAAIREDISANL ACE LT    A +VLVESGGDNLAAN+SRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  V ADL VM R+AK+MRG G T+F+Q+  G+GV++I + I++A++A+ A
Sbjct:   11 KQLREHGHTHEHFEHAGHFDERDPVHSGRDFSLRAFTVGIGGPVGSGKTALMLALCQELKDKFSIAAVTNDIFTREDGEFLVRHQALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQMVLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVNADLSVMDRDAKLMRGTGPTVFSQINAGQGVKEIIEFIIKAWKASGA 243          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: UPI002007A741 (urease accessory protein UreG n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI002007A741)

HSP 1 Score: 315 bits (807), Expect = 3.070e-102
Identity = 163/243 (67.08%), Postives = 187/243 (76.95%), Query Frame = 2
Query:  116 AGHQHGDEEPSASTQSLAEHGXXXEHMDHPGFFADRE-PLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAY 841
            A H HGD   S S     EHG   E +DHPG +A+R+ P    R   ER +TVGIGGPVGSGKTAL L LC+ LR E +I  VTNDIFTRED EFL K+ AL   RILAIETGGCPHAAIREDISAN+GA E L AR    ++ VESGGDNLAANYSRELADYI+YVIDVAGGDK+PRKGGPGI+QSDLLVINKTDLA  VGA LEVM R+AK+MRG+G T+F  V++G+GV+D+  LIL A+
Sbjct:   20 AAHSHGDAAHSHSHDGANEHGHTHEQLDHPGKYAERDMPNYTSRNFEERGFTVGIGGPVGSGKTALTLALCQKLRAEYNIATVTNDIFTREDQEFLIKHRALPPARILAIETGGCPHAAIREDISANMGALEALQARFACQLLFVESGGDNLAANYSRELADYIVYVIDVAGGDKIPRKGGPGISQSDLLVINKTDLAPHVGASLEVMDRDAKLMRGDGPTVFTSVREGKGVDDVTDLILAAW 262          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: W3X1K9_PESFW (Urease accessory protein ureG-like protein n=2 Tax=Sporocadaceae TaxID=1812776 RepID=W3X1K9_PESFW)

HSP 1 Score: 315 bits (806), Expect = 3.540e-102
Identity = 166/233 (71.24%), Postives = 188/233 (80.69%), Query Frame = 2
Query:  161 SLAEHGXXXEHMDHPGFFADRE-PLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAYEATKA 856
            S A+HG   E +D PG +  RE P+   R  SERA+TVGIGGPVGSGKTALML LC  LR++ SI AVTNDIFTREDAEFLTKN AL   RI AIETGGCPHAA+REDISANL A E L     +DI+L+ESGGDNLAANYSRELADYIIYVIDV+GGDKVPRKGGPGITQSDLLV+NKTDLAEAVGADL+VM R+A+ MR  G T+FAQVKKG  V+ I  LI+ A++A+ A
Sbjct:   19 SAADHGHSHEILDGPGSYIGREMPIVEGREWSERAFTVGIGGPVGSGKTALMLALCLALREKYSIAAVTNDIFTREDAEFLTKNKALPAPRIRAIETGGCPHAAVREDISANLAALEDLHREFGSDILLIESGGDNLAANYSRELADYIIYVIDVSGGDKVPRKGGPGITQSDLLVVNKTDLAEAVGADLDVMERDARKMREGGPTVFAQVKKGVAVDHIVNLIISAWKASGA 251          
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Match: A0A8I3A8M5_9AGAM (Urease accessory protein UreG n=2 Tax=Boletus reticuloceps TaxID=495285 RepID=A0A8I3A8M5_9AGAM)

HSP 1 Score: 315 bits (806), Expect = 3.790e-102
Identity = 159/225 (70.67%), Postives = 183/225 (81.33%), Query Frame = 2
Query:  170 EHGXXXEHMDHPGFFADRE-PLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDELSIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANLGACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKKGEGVEDIKKLILEAY 841
            EHG   EH+DH G FA+R+ P    R   ER +TVGIGGPVGSGKTAL L LCK LR+E +I  VTNDIFTRED EFL KN AL   RILAIETGGCPHAAIREDISANLGA E L A++   ++ VESGGDNLAANYSRELADYIIYVIDVAGGDK+PRKGGPGI+QSDLLVINK D+AE V A LEVM+R+A++MRG+G T+FA VKK +GVED+ +L+L A+
Sbjct:   35 EHGHTHEHLDHAGKFAERDLPDYTSRNFQERGFTVGIGGPVGSGKTALTLALCKRLREEYNIATVTNDIFTREDQEFLIKNEALPASRILAIETGGCPHAAIREDISANLGALENLQAKYGCQLLFVESGGDNLAANYSRELADYIIYVIDVAGGDKIPRKGGPGISQSDLLVINKIDIAEYVNASLEVMQRDARIMRGDGPTVFASVKKNQGVEDVVELVLAAW 259          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV08_9PHAE1.450e-14688.80cobW domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CD81_9STRA2.060e-10977.52Urease accessory protein ureG n=1 Tax=Tribonema mi... [more]
A0A162U528_PHYB88.340e-10568.15cobW domain-containing protein n=1 Tax=Phycomyces ... [more]
A0A261Y2A4_9FUNG1.360e-10471.00Putative urease accessory protein ureG-like n=1 Ta... [more]
A0A5D6XFG9_9STRA5.290e-10369.83cobW domain-containing protein (Fragment) n=1 Tax=... [more]
A0A367KWJ6_RHIST1.250e-10263.36cobW domain-containing protein n=2 Tax=Mucorineae ... [more]
K3X4S2_GLOUD1.410e-10268.67cobW domain-containing protein n=1 Tax=Globisporan... [more]
UPI002007A7413.070e-10267.08urease accessory protein UreG n=1 Tax=Epithele typ... [more]
W3X1K9_PESFW3.540e-10271.24Urease accessory protein ureG-like protein n=2 Tax... [more]
A0A8I3A8M5_9AGAM3.790e-10270.67Urease accessory protein UreG n=2 Tax=Boletus reti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:348620..352059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.1
Seed ortholog evalue1.6e-117
Seed eggNOG ortholog2880.D8LD20
Preferred nameUREG
KEGG koko:K03189
Hectar predicted targeting categoryother localisation
GOsGO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019627,GO:0034641,GO:0043085,GO:0043603,GO:0044093,GO:0044237,GO:0044281,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:0071941,GO:1901564
EggNOG free text desc.nickel cation binding
EggNOG OGs2QR6E@2759,COG0378@1
Ec32 ortholog descriptionCobW/HypB/UreG domain
Ec32 orthologEc-01_001950.1
COG Functional cat.KO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons7
Model size1373
Cds size828
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.4625838-UTR-C-linearis_contig112:348619..3486651622927493.4625838-UTR-C-linearis_contig112:348619..348665Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 348620..348665 +
1690879730.8074048-UTR-C-linearis_contig112:348619..3486651690879730.8074048-UTR-C-linearis_contig112:348619..348665Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 348620..348665 +
1622927493.660951-UTR-C-linearis_contig112:351560..3520591622927493.660951-UTR-C-linearis_contig112:351560..352059Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 351561..352059 +
1690879730.9005103-UTR-C-linearis_contig112:351560..3520591690879730.9005103-UTR-C-linearis_contig112:351560..352059Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 351561..352059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.472669-CDS-C-linearis_contig112:348665..3487791622927493.472669-CDS-C-linearis_contig112:348665..348779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 348666..348779 +
1690879730.8201275-CDS-C-linearis_contig112:348665..3487791690879730.8201275-CDS-C-linearis_contig112:348665..348779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 348666..348779 +
1622927493.48528-CDS-C-linearis_contig112:349028..3491651622927493.48528-CDS-C-linearis_contig112:349028..349165Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 349029..349165 +
1690879730.8295536-CDS-C-linearis_contig112:349028..3491651690879730.8295536-CDS-C-linearis_contig112:349028..349165Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 349029..349165 +
1622927493.597627-CDS-C-linearis_contig112:349602..3496631622927493.597627-CDS-C-linearis_contig112:349602..349663Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 349603..349663 +
1690879730.838976-CDS-C-linearis_contig112:349602..3496631690879730.838976-CDS-C-linearis_contig112:349602..349663Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 349603..349663 +
1622927493.6125798-CDS-C-linearis_contig112:349937..3500081622927493.6125798-CDS-C-linearis_contig112:349937..350008Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 349938..350008 +
1690879730.8483179-CDS-C-linearis_contig112:349937..3500081690879730.8483179-CDS-C-linearis_contig112:349937..350008Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 349938..350008 +
1622927493.6238759-CDS-C-linearis_contig112:350425..3505561622927493.6238759-CDS-C-linearis_contig112:350425..350556Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 350426..350556 +
1690879730.858156-CDS-C-linearis_contig112:350425..3505561690879730.858156-CDS-C-linearis_contig112:350425..350556Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 350426..350556 +
1622927493.6348383-CDS-C-linearis_contig112:351027..3511971622927493.6348383-CDS-C-linearis_contig112:351027..351197Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 351028..351197 +
1690879730.8700004-CDS-C-linearis_contig112:351027..3511971690879730.8700004-CDS-C-linearis_contig112:351027..351197Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 351028..351197 +
1622927493.6476722-CDS-C-linearis_contig112:351416..3515601622927493.6476722-CDS-C-linearis_contig112:351416..351560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 351417..351560 +
1690879730.8892086-CDS-C-linearis_contig112:351416..3515601690879730.8892086-CDS-C-linearis_contig112:351416..351560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 351417..351560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1538.1prot_C-linearis_contig112.1538.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 348666..351560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1538.1

>prot_C-linearis_contig112.1538.1 ID=prot_C-linearis_contig112.1538.1|Name=mRNA_C-linearis_contig112.1538.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=276bp
MASEVHSQDHEHGHGHGHSHSHDAGHQHGDEEPSASTQSLAEHGHTHEHM
DHPGFFADREPLQPHRALSERAYTVGIGGPVGSGKTALMLELCKLLRDEL
SIGAVTNDIFTREDAEFLTKNSALEEGRILAIETGGCPHAAIREDISANL
GACETLTARHKADIVLVESGGDNLAANYSRELADYIIYVIDVAGGDKVPR
KGGPGITQSDLLVINKTDLAEAVGADLEVMRREAKVMRGEGDTIFAQVKK
GEGVEDIKKLILEAYEATKAAAAST*
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mRNA from alignment at C-linearis_contig112:348620..352059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1538.1 ID=mRNA_C-linearis_contig112.1538.1|Name=mRNA_C-linearis_contig112.1538.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3440bp|location=Sequence derived from alignment at C-linearis_contig112:348620..352059+ (Chordaria linearis ClinC8C monoicous)
CGCGCCTCTGCCTCACTACTGCTGTGTCCCGCGCCCTTCCGAAGCCATGG CGTCAGAGGTTCACTCCCAGGATCACGAGCACGGCCACGGCCACGGCCAC TCCCACTCCCACGATGCCGGCCACCAACACGGGGATGAGGAACCCTCGGC GAGCACGCAGGTTCGCTTTCGAAACAGCAGCTCTGCTGTCGCGCCCAGCT GCACTTGCACTCCGGCACGGCACGCCGGCACGCTGCCCGCACCACCTCTG AACTGCCTTATTTCGCTCTGCTCTCATCATTCCCGCTCCTTCCCACCCAC TCTCGTAAGTAGCATGCTCTCGAATGCCCACCCTCGAAGCGTTCGAATTA TCATAGAGTTTTTCCCTGCTTCCCTTGCGCTCCACCTCTCGACGCCCTTC CCAGAACAGAGCCTAGCAGAACACGGCCACACCCACGAGCACATGGACCA CCCAGGCTTTTTCGCCGACCGTGAACCCCTGCAGCCTCACCGAGCCCTTT CGGAGCGCGCTTACACCGTGGGGATCGGCGGACCAGTAGGAAGCGGGTGA GTTTCAAGGGCTGCTGTGGCTCATTGTTTAGGACACGTCGTGGGGAAACA AGGACATCAACGGCAGCCGGCGGGTTTTCTGTTCTCGCCCTCAGCTACCT TTTTCCTCGCCTCGCCGATGTGGATTTCCAGGAGGATTACACAGAAAGCA TGCCGTGTTCAAGTATGAATCCGGTTTAGACATCTCAAACATACGCCACC GCGCGAACAGAGCAAGCAGTAGTTTTGCGCCCATAATATACTATGCGAAC GACTGCAGCTCGGCAAATATCCCGCGCCTCTCCCGCGGCCTTCAATGCAC AGAGTGCCACGGACATTGAGTTTCCTCGCAGCTTTTGGATAGCTTCTCTC GATGTTGGCGATGTGTTCCACACACAAACTTCCGGGCTTTGCTCCGTGTG GCGTGTACCGGCCGTCGTTTCGCTTGTGGGCAGAAAGACGGCGTTGATGC TCGAGCTGTGCAAGTTGCTGCGGGACGAGCTGAGTATAGGAGCGGTGAGC CCACACCCCTTGCATTGCCCCGCTGTAATAGGTGCCCCCCTCGAACACTG CGGATGCCGCTGGGGTATCGCGATGACTTGTGTAGAGCTACGTGGAGCAG AATGCGACGTTTCCTCGGACCAAAAGCCTAGCGCAAGTTTTCATGTCGAT GTACCGTATCGCACAACGCCGAAGATCGGGTTGACTCGACCTCGCGTTTG CCCTTACCTTACCCCCGCCTTGTCATTCTCTGTTTGCTGGCGGCAAATGC ATCGCCGACTGATATCAGGTGACGAACGATATCTTTACAAGGGAAGACGC CGAGTTTCTCACCAAAAACTCCGCTTTGGAGGAGGGTAGGTGAGTCTTGA GTCCAGCAAAGTGAGAGCACAACTTTGCCTGAGGGTGACAGCAGGTTTTG CTACAACATGATGGTGGTAGGCCGCGGGCACTCCATGGAACTGAGCGTAT TTGTTCCAACCTTGATGCGAAGTGGGTAGTCACTCTTGGGGTTTTACAAA ATAAATCTGCGCCCGGTTTCCTTCGGCATGCACAGCAGTCGTGCGTGAGA GCCTCTCCTCCCGTGCTGAACTGAACCCAATGTCCTCCTGAACCACCGTC GACTCGCCCAAGAGTCGCCGATCGGAGCTGGAGGGCTAACAATTGCGGTT TATGCACGATTCGGCCGCTGTTTTTGCCCCGCATTTCCACGGGCTATCGT ACCATGTGCGTGCACGATGTGTTTCTTTTTTGTCTGTTTCCTTCCTCAAT CCGCAGAATTCTTGCCATCGAGACCGGGGGTTGCCCCCACGCGGCCATCC GCGAAGACATCAGCGCAAACCTCGGGGCATGCGAGACCCTAACCGCCAGG CATAAGGCCGACATCGTCCTCGTCGAGTCCGGAGGCGGTGCGTTCAGACG AAGCAGTGTCACACGCAACCACAAAGTTGTGTCGCCGTCGCGACCGCGAC CGCGTCTGATTTTCGGCTTTCCCTCTGTGTCTATGTTTCGCTCGAACAGC TCTTTTTCGTGGAATTGTTTGTTCTTGTCGCGCCGCTACTTCATCTTCGG AGAAGGCTTGACGCGATTGGCGGGTGATGGATGGGTCGAAGGATGGGTTG TCGCACGAGCCGTCCCGGGGAAGAAAATACCAGCCGTAAAGCCGACTTAC TCCTGGTCGTGTCACTGCTATATTTAGCTTGCACTTCGTCCTCAACCTCC TGCGTACGTACCCGTACTTGCCCTCGTGCTTCTCTAGACTTGGTATGCCT CGACACCCCTCCCTCACAAATCAATGCTTATCCTTTTCTCTCTCTCTCTC TCTCTTTCTCTCTCTCTCGCCGCGCTGTGTCTCTTTGCCATCTCATTTAT CGCGCCAGATAATCTTGCGGCGAACTACAGCCGAGAGCTAGCGGATTATA TCATCTACGTGATTGACGTTGCCGGCGGGGACAAGGTGCCCAGAAAGGGC GGGCCGGGTATCACACAGTCCGACCTGCTCGTGATCAACAAGACCGATCT GGCGGAGGCGGTGGGCGCGGACCTAGAGGTGACAAAGTACGAATAAACAC AGCCAAGCGATACACTTTTTTCTAGAAGTGCGCGCGTTCGTGCGCGTGTT TGTGTGTGTCCTCAAAGGAAGGATTGTGTTTGCTGCCGCCCCTTGTATAT TACTCTCGTTGGCCTTGCGGATTATCTTCCTGCTTCACTCTTTCCGTAAC CCTTACCCTTTGTTGCACTGATTTTACGTGTCCGTGCGAACATGAAGGTC ATGCGGCGCGAGGCTAAGGTCATGCGGGGGGAGGGAGACACGATCTTCGC CCAGGTCAAGAAAGGGGAAGGGGTGGAGGACATCAAGAAGCTCATCCTCG AGGCCTACGAAGCCACCAAGGCGGCAGCGGCCAGCACTTGACCGCCTTGA TACAAAGTGCTTCGTGTGAATCGGGGTGGGGGCAGAGGAGCAGCCTCCAA AGCACGTATTGTAGCTGTTCGAAAACGACGTTGCTCCAAAATCGTGGCAA CGAAGCGGGGGAGGGGGTGCATTTTGGGTGGTTGGTTTCCGCAGGCACGT GGGCCGAGGCGCGGTGTTCTTCACGTAGTTTTTCTGGTTCTGTTTGTGCC TTTCTGTTGAAGTCACCCCAGAAAGTAATCTAACGTAAGTAGAAGTACAC ATGTTGGGCCGGCCCGCAAATCGACAGGACAGAACAAGGTGCCCGAGAGA CAAGAGACACTCGAATCTTACGGAGGTTACATTGACCCAAGTTTCTTTTA TCGGGTGTGAAAACCTACAGAACGCCACACTTCGGTTTCCCTCAGGAATA CGGAGGCAGGCTCAACATCAGTAAAGGACACGACGCCCGCCCGCACTTCG ATGAGACTCCGACTTCGACCTCAGTTCTCCGCTTTGTGAA
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Coding sequence (CDS) from alignment at C-linearis_contig112:348620..352059+

>mRNA_C-linearis_contig112.1538.1 ID=mRNA_C-linearis_contig112.1538.1|Name=mRNA_C-linearis_contig112.1538.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at C-linearis_contig112:348620..352059+ (Chordaria linearis ClinC8C monoicous)
ATGGCGTCAGAGGTTCACTCCCAGGATCACGAGCACGGCCACGGCCACGG
CCACTCCCACTCCCACGATGCCGGCCACCAACACGGGGATGAGGAACCCT
CGGCGAGCACGCAGATGGCGTCAGAGGTTCACTCCCAGGATCACGAGCAC
GGCCACGGCCACGGCCACTCCCACTCCCACGATGCCGGCCACCAACACGG
GGATGAGGAACCCTCGGCGAGCACGCAGAGCCTAGCAGAACACGGCCACA
CCCACGAGCACATGGACCACCCAGGCTTTTTCGCCGACCGTGAACCCCTG
CAGCCTCACCGAGCCCTTTCGGAGCGCGCTTACACCGTGGGGATCGGCGG
ACCAGTAGGAAGCGGAGCCTAGCAGAACACGGCCACACCCACGAGCACAT
GGACCACCCAGGCTTTTTCGCCGACCGTGAACCCCTGCAGCCTCACCGAG
CCCTTTCGGAGCGCGCTTACACCGTGGGGATCGGCGGACCAGTAGGAAGC
GGAAAGACGGCGTTGATGCTCGAGCTGTGCAAGTTGCTGCGGGACGAGCT
GAGTATAGGAGCGAAAGACGGCGTTGATGCTCGAGCTGTGCAAGTTGCTG
CGGGACGAGCTGAGTATAGGAGCGGTGACGAACGATATCTTTACAAGGGA
AGACGCCGAGTTTCTCACCAAAAACTCCGCTTTGGAGGAGGGTAGGTGAC
GAACGATATCTTTACAAGGGAAGACGCCGAGTTTCTCACCAAAAACTCCG
CTTTGGAGGAGGGTAGAATTCTTGCCATCGAGACCGGGGGTTGCCCCCAC
GCGGCCATCCGCGAAGACATCAGCGCAAACCTCGGGGCATGCGAGACCCT
AACCGCCAGGCATAAGGCCGACATCGTCCTCGTCGAGTCCGGAGGCGAAT
TCTTGCCATCGAGACCGGGGGTTGCCCCCACGCGGCCATCCGCGAAGACA
TCAGCGCAAACCTCGGGGCATGCGAGACCCTAACCGCCAGGCATAAGGCC
GACATCGTCCTCGTCGAGTCCGGAGGCGATAATCTTGCGGCGAACTACAG
CCGAGAGCTAGCGGATTATATCATCTACGTGATTGACGTTGCCGGCGGGG
ACAAGGTGCCCAGAAAGGGCGGGCCGGGTATCACACAGTCCGACCTGCTC
GTGATCAACAAGACCGATCTGGCGGAGGCGGTGGGCGCGGACCTAGAGAT
AATCTTGCGGCGAACTACAGCCGAGAGCTAGCGGATTATATCATCTACGT
GATTGACGTTGCCGGCGGGGACAAGGTGCCCAGAAAGGGCGGGCCGGGTA
TCACACAGTCCGACCTGCTCGTGATCAACAAGACCGATCTGGCGGAGGCG
GTGGGCGCGGACCTAGAGGTCATGCGGCGCGAGGCTAAGGTCATGCGGGG
GGAGGGAGACACGATCTTCGCCCAGGTCAAGAAAGGGGAAGGGGTGGAGG
ACATCAAGAAGCTCATCCTCGAGGCCTACGAAGCCACCAAGGCGGCAGCG
GCCAGCACTTGAGTCATGCGGCGCGAGGCTAAGGTCATGCGGGGGGAGGG
AGACACGATCTTCGCCCAGGTCAAGAAAGGGGAAGGGGTGGAGGACATCA
AGAAGCTCATCCTCGAGGCCTACGAAGCCACCAAGGCGGCAGCGGCCAGC
ACTTGA
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