mRNA_C-linearis_contig112.1536.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A6H5KWP2_9PHAE (DUF2407_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP2_9PHAE) HSP 1 Score: 266 bits (681), Expect = 3.070e-84 Identity = 162/324 (50.00%), Postives = 177/324 (54.63%), Query Frame = 1
Query: 346 MLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEE----------------------------------------------------------------------------------------------------------------EIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRGDEDEA 981
MLNP++AL+KDFGLTENCYVHCV+TAAPPRLRLPSLTPEQAAEE E+E++DPA+RRGFDALRNNG R EVT IR YFSAQVRE VE+EELWMRAQPATSEF+LNVS+ARRT+GPGG G+DGFDD GSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTV +VQAA R DEDE+
Sbjct: 1 MLNPDEALIKDFGLTENCYVHCVITAAPPRLRLPSLTPEQAAEEASGNPGETSEVLLLTGGKERHLLLCTSCCIHLRGVSFWRSDTGRDGGPSSLSLVRRRGRFDASILSACLRIHQTRFDNRTGRFYGSLDKCRGGRYRRDLRGQAERRLESETEEVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVRE-------------------VESEELWMRAQPATSEFALNVSMARRTTGPGGT---LTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAANRRDEDES 302
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A835Z7C3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C3_9STRA) HSP 1 Score: 177 bits (449), Expect = 7.190e-49 Identity = 123/315 (39.05%), Postives = 162/315 (51.43%), Query Frame = 1
Query: 196 TLSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREG-----------------QTDWDRQVEAEEL-----------------------------------------WMRAQPATSEFSLNVSLARRTSG--PGGLGGMAQGIDGFDDDGS----GGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQ 948
T +L++KT DG+EY V +S +VAQ K+ V AIGAEGKYLRLI++GKML P+ A + F + + +VHCVV+++ P+ PA+RRGFD LR+ G R+EV +R+YFS QV F + PP+ + ++ WDRQ+ AEE+ WM AQ A+SEF+LN ARRT+ GGL MAQ DD+ G +RDF+FGF MG FLG IML WLWE VP RQK GI+AGV F ++L Q
Sbjct: 40 TFTLKIKTTTDGKEYKVDASNVVSVAQLKDRVRAAIGAEGKYLRLIASGKMLAPDTAALAAFKVPDQSFVHCVVSSSAPQASAXXXXXXXXXXXXXXX-XPAARRGFDRLRSEGMTRAEVIAMRSYFSEQVNTFLEATPPAPQAAAGXXXXXXXQLSAAAAAESQWDRQLRAEEVGLGDVMMLIKLIMXXXXXXXXXXXESECNGQLHEEEAGSVAWMAAQSASSEFALNT--ARRTAAMREGGLP-MAQVWASSDDEMENPEIGTSRDFVFGFIMGGFLGFIMLFWLWEPNVPHRQKGGIVAGVMFNLLINLWQ 350
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A4D9DA21_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA21_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.200e-40 Identity = 107/283 (37.81%), Postives = 161/283 (56.89%), Query Frame = 1
Query: 199 LSLRVKTAGDGREYSVSSSLTS-TVAQFKEEVSRAI-GAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIE----EEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDR-EGQTDWDRQVEAEELWMRAQPATSEFSLNVS--LARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRGDEDEA-E*GEATP*GEDG 1017
+SLR+KT D +E+ V + TV++ K ++SR++ GAEGK+LRLI+ GK+L P+ A ++ F +++ VHCV + PPR + A E+E +DPA RRGFD LR +G++ EV +R+YF+AQV +AAS + + +T +R++ E+ WM Q SEF+LN + +A R GGM G + G+G +RDF++GF MG LG I L WLW QK+GI+ GV+ ++++ A G+ E E G P G G
Sbjct: 172 ISLRIKTL-DSKEHLVEVDASCLTVSELKSKLSRSLPGAEGKFLRLITQGKLLTPDTASLESFRISDRAVVHCVFSDQPPRAHIRVDLERGAGSGEVEYPDVNDDPAQRRGFDRLRTHGFSIQEVAALRSYFNAQVVAYAASREAEEGPDAETVEERRLRMEDEWMGRQGEESEFALNTNRVVATRAVFAARRGGMEDGRG--LEMGTGTSRDFLYGFIMGFALGFISLFWLWNVPQTHTQKMGIILGVSCSLGWNIIRRAEMEGETGEGGEEGSDFPPGFGG 451
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A7R9U1S3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1S3_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.390e-39 Identity = 101/244 (41.39%), Postives = 142/244 (58.20%), Query Frame = 1
Query: 259 TSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDF--GLTENCYVHCVVTAAPP--RLRLPSLTPEQA-AEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTS-------GPGGLGG---MAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLV 945
T TV + K+ V++ + A KY+RLI++G+ML P+ ALV+ F L + +VH VVTA P RLR L P A A E+ +E DP S GFD LR++G+ R+EV +R+YF +R+ A L REG+++ D Q+ EE W+ Q SE+ N RR S G L G+ D G RDF++GF MG FLGVIML WLWE +V +RQK+GI+ GV+ + +++ V
Sbjct: 27 TQTVLEAKKAVAQLLNAGDKYVRLIASGRMLAPDAALVEQFCPPLQDGAFVHAVVTAKPNPGRLRASLLRPTPAGATEDDDEVDPTSLHGFDRLRSSGFGRAEVLALRSYFRRHLRDHAEQL--QQREGESNRDFQMRVEEDWVAQQGRGSEWDFNTR--RRESLGDDIEEGSRSLSNAHVFGPGLGDMDVAAPGSMRDFVWGFFMGFFLGVIMLFWLWERSVSQRQKMGIIFGVSLQLSLNFV 266
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A7S2SSC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSC9_9STRA) HSP 1 Score: 147 bits (372), Expect = 4.470e-38 Identity = 110/268 (41.04%), Postives = 150/268 (55.97%), Query Frame = 1
Query: 172 GAVEEGDSTLSLRVKTAGDG---REYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAA---EEEIEEEDPASRR-GFDALRNNGYARSEVTTIRAYFSAQVREFAASL--PPSD-REGQTDWDRQVEAEELWMRAQPATSEFSLNV--------SLARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVT 921
G E G + + LRVKTA G E+ V++ L V + K V +GA+GKYLRLI +G+ML P A + F L +H VV+ APPR PS +A + EEE A RR GFDALRN G RS V ++RAYF++QV E+A S P D ++G+T+ R++ E+ W+ AQ EF+ N TSG G G + + ++GS RDF++GF +G F GVIML WLWE RQK+GI+AG++
Sbjct: 19 GRGEGGANAVRLRVKTANHGDVNAEHWVTARLGDPVDRLKRRVEEVVGAQGKYLRLICSGRMLAPPTAPLSSFKLKNEDVIHAVVSDAPPRNSYPSGPTSEARVADSDSDEEEGGAGRRLGFDALRNRGLTRSGVESLRAYFASQVDEYARSQGSPLFDLQDGETEQHRRLRWEDAWIHAQSEHGEFAANFMPDPFAAPENMDATSGEG-WGQVNDEVGSPLEEGS--YRDFVWGFFLGFFFGVIMLFWLWEHG-SYRQKMGIMAGIS 282
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: W4HE28_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HE28_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.350e-35 Identity = 98/262 (37.40%), Postives = 140/262 (53.44%), Query Frame = 1
Query: 193 STLSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDD----DGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRG 966
S L+LRVKT + + ++ S T++V + K+ + AEGK+LRLI GKMLN + A + + +N ++HC ++ APP+ + +T +Q EE ++P RRGFD LR+ +R +V +R +F QV + REG++ DR EE WM AQ SEF+LNV R GP + A D D G T D ++G AMG LG ML LWE +PRRQKLGI+ GV ++ +Q G
Sbjct: 29 SILNLRVKTLSE-KPLNIDISATASVGELKDMIKAKGEAEGKFLRLIHQGKMLNDDKAALLSCNIKQNDFIHCAMSNAPPKSLVQQMTHQQ---EEAALDEPTHRRGFDCLRDT-LSREDVQALRLHFYPQVSTMISQSVA--REGESVEDRIYRIEEEWMAAQGPQSEFALNV---RPRGGPMTIHDSAHHRIDMPDMSSVDNEGTTVDMVWGVAMGFVLGFFMLFLLWERTIPRRQKLGIVIGVAINLLLNFMQRLTPEG 280
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A0P1ADY7_PLAHL (Ubiquitin family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADY7_PLAHL) HSP 1 Score: 138 bits (348), Expect = 7.390e-35 Identity = 95/253 (37.55%), Postives = 149/253 (58.89%), Query Frame = 1
Query: 205 LRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDR-EGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARR--TSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAA 954
L+VKT + + V +++VA+ KE V + + AEGK+LRLI GKML+ + A ++ + ++ +VHC ++AAPP+ + + A E E++D +RRGFD LR+ +R E+ +R YF Q+ F + ++R G++ DR EE WM +Q SEF+LNV R T + GM+ I D++G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+ +S+V A
Sbjct: 35 LKVKTLSE-KPLRVEIVHSASVAELKELVKKKVNAEGKFLRLIHQGKMLSDDKATLESCKVKDDDFVHCAISAAPPKAIINQVA--STAIELEEQDDETTRRGFDRLRDR-LSREEIQALRLYFYPQLSVF---ISRAERIHGESSEDRIYRLEEEWMASQGPQSEFALNVVPTARIATDTQIDINGMSNSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRA 278
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: G4YL67_PHYSP (Ubiquitin-like domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=G4YL67_PHYSP) HSP 1 Score: 137 bits (346), Expect = 1.670e-34 Identity = 92/255 (36.08%), Postives = 145/255 (56.86%), Query Frame = 1
Query: 205 LRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREF---AASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPG--GLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAA 954
L++KT + + V + +S+V + KE V + AEGK+LRLI GKML+ + A ++ + ++HC +++APP+ + + + E +DPA+RRGFD LR+ +R E+ +R YF Q+ + AA +P G++ DR EE WM +Q SEF+LNV R + + GM I D++G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+ +S+V A
Sbjct: 39 LKIKTLSE-KPLRVEVAPSSSVGELKELVKKKANAEGKFLRLIHQGKMLSDDKATLESCKVKNEDFIHCAISSAPPKAVVNQMAAAGTDSDPEERDDPATRRGFDRLRDR-LSREEIQALRLYFYPQLSVYISQAARVP-----GESSEDRIYRLEEEWMASQGPQSEFALNVVPTARIAMDTQIDMNGMNNSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRA 284
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A024USD5_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USD5_9STRA) HSP 1 Score: 136 bits (343), Expect = 4.050e-34 Identity = 93/262 (35.50%), Postives = 138/262 (52.67%), Query Frame = 1
Query: 199 LSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDD------DGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRG 966
L+LRVKT + + ++ + T+TV K+ + AEGK+LRLI GK+LN + A++ + N ++HC +++ PP+ + +T +Q +++ ++P RRGFD LR+ R EV +R +F QV + REG++ DR EE WM AQ SEF+LNV R G + I D D G T D ++G AMG LG ML LWE ++PRRQKLGI+ GV ++ +Q G
Sbjct: 31 LTLRVKTLSE-KPLNIDINATATVGDLKDMIKTKGHAEGKFLRLIHQGKLLNDDKAVLLSSNVKNNDFIHCAMSSVPPKSLVQQMTHQQ---DDVASDEPNHRRGFDCLRDT-LTREEVQALRLHFYPQVSAMISQSVA--REGESVEDRIYRVEEEWMAAQGPQSEFALNV---RPRGGHITMESFHDSIHRIDMPDMPLIDNEGTTVDMIWGVAMGLILGFFMLFLLWERSIPRRQKLGIVVGVAINLLLNFMQRLTPEG 282
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A2D4BQE0_PYTIN (Ubiquitin family protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQE0_PYTIN) HSP 1 Score: 135 bits (340), Expect = 1.370e-33 Identity = 92/252 (36.51%), Postives = 141/252 (55.95%), Query Frame = 1
Query: 190 DSTLSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLV 945
D L L+VKT + + V T+TV + KE V + AEGK+LRLI GKML+ + A ++ + + ++HC ++AAPP+ + ++ +Q EE EDP+ RRGFD LR+ +R EV +R Y + + + G++ DR EE WM +Q SEF+LNV R + + I D++G+G +F++GF MG LGV MLL L + +VPR+QK+G+L GV+ +S+V
Sbjct: 43 DDRLVLKVKTMTE-KPIVVEIVATATVGELKEIVKKQTNAEGKFLRLIHQGKMLSDDKATLESYKIKSEDFIHCAISAAPPKAVVNQMSADQEPEER---EDPSRRRGFDRLRDR-LSREEVQALRLYXYPXLSLYISQAERVP--GESSEDRIYRLEEEWMASQGPHSEFALNVVPTARIAMDQMDANVDSSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKIGLLLGVSMNFFLSVV 285 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1536.1 >prot_C-linearis_contig112.1536.1 ID=prot_C-linearis_contig112.1536.1|Name=mRNA_C-linearis_contig112.1536.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=314bp MSPAVEDTIPVVQSSVPLLSRRRGTLSNSSSSVKNDASDMELGAVEEGDSback to top mRNA from alignment at C-linearis_contig112:339235..343186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1536.1 ID=mRNA_C-linearis_contig112.1536.1|Name=mRNA_C-linearis_contig112.1536.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3952bp|location=Sequence derived from alignment at C-linearis_contig112:339235..343186+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:339235..343186+ >mRNA_C-linearis_contig112.1536.1 ID=mRNA_C-linearis_contig112.1536.1|Name=mRNA_C-linearis_contig112.1536.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at C-linearis_contig112:339235..343186+ (Chordaria linearis ClinC8C monoicous)back to top |