mRNA_C-linearis_contig112.1536.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1536.1
Unique NamemRNA_C-linearis_contig112.1536.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A6H5KWP2_9PHAE (DUF2407_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP2_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 3.070e-84
Identity = 162/324 (50.00%), Postives = 177/324 (54.63%), Query Frame = 1
Query:  346 MLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEE----------------------------------------------------------------------------------------------------------------EIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRGDEDEA 981
            MLNP++AL+KDFGLTENCYVHCV+TAAPPRLRLPSLTPEQAAEE                                                                                                                E+E++DPA+RRGFDALRNNG  R EVT IR YFSAQVRE                   VE+EELWMRAQPATSEF+LNVS+ARRT+GPGG      G+DGFDD GSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTV +VQAA  R DEDE+
Sbjct:    1 MLNPDEALIKDFGLTENCYVHCVITAAPPRLRLPSLTPEQAAEEASGNPGETSEVLLLTGGKERHLLLCTSCCIHLRGVSFWRSDTGRDGGPSSLSLVRRRGRFDASILSACLRIHQTRFDNRTGRFYGSLDKCRGGRYRRDLRGQAERRLESETEEVEDDDPATRRGFDALRNNGMTRGEVTAIRGYFSAQVRE-------------------VESEELWMRAQPATSEFALNVSMARRTTGPGGT---LTGLDGFDDAGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVQMVQAAANRRDEDES 302          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A835Z7C3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C3_9STRA)

HSP 1 Score: 177 bits (449), Expect = 7.190e-49
Identity = 123/315 (39.05%), Postives = 162/315 (51.43%), Query Frame = 1
Query:  196 TLSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREG-----------------QTDWDRQVEAEEL-----------------------------------------WMRAQPATSEFSLNVSLARRTSG--PGGLGGMAQGIDGFDDDGS----GGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQ 948
            T +L++KT  DG+EY V +S   +VAQ K+ V  AIGAEGKYLRLI++GKML P+ A +  F + +  +VHCVV+++ P+                    PA+RRGFD LR+ G  R+EV  +R+YFS QV  F  + PP+ +                   ++ WDRQ+ AEE+                                         WM AQ A+SEF+LN   ARRT+    GGL  MAQ     DD+      G +RDF+FGF MG FLG IML WLWE  VP RQK GI+AGV F   ++L Q
Sbjct:   40 TFTLKIKTTTDGKEYKVDASNVVSVAQLKDRVRAAIGAEGKYLRLIASGKMLAPDTAALAAFKVPDQSFVHCVVSSSAPQASAXXXXXXXXXXXXXXX-XPAARRGFDRLRSEGMTRAEVIAMRSYFSEQVNTFLEATPPAPQAAAGXXXXXXXQLSAAAAAESQWDRQLRAEEVGLGDVMMLIKLIMXXXXXXXXXXXESECNGQLHEEEAGSVAWMAAQSASSEFALNT--ARRTAAMREGGLP-MAQVWASSDDEMENPEIGTSRDFVFGFIMGGFLGFIMLFWLWEPNVPHRQKGGIVAGVMFNLLINLWQ 350          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A4D9DA21_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA21_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.200e-40
Identity = 107/283 (37.81%), Postives = 161/283 (56.89%), Query Frame = 1
Query:  199 LSLRVKTAGDGREYSVSSSLTS-TVAQFKEEVSRAI-GAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIE----EEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDR-EGQTDWDRQVEAEELWMRAQPATSEFSLNVS--LARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRGDEDEA-E*GEATP*GEDG 1017
            +SLR+KT  D +E+ V    +  TV++ K ++SR++ GAEGK+LRLI+ GK+L P+ A ++ F +++   VHCV +  PPR  +       A   E+E     +DPA RRGFD LR +G++  EV  +R+YF+AQV  +AAS    +  + +T  +R++  E+ WM  Q   SEF+LN +  +A R       GGM  G     + G+G +RDF++GF MG  LG I L WLW       QK+GI+ GV+     ++++ A   G+  E  E G   P G  G
Sbjct:  172 ISLRIKTL-DSKEHLVEVDASCLTVSELKSKLSRSLPGAEGKFLRLITQGKLLTPDTASLESFRISDRAVVHCVFSDQPPRAHIRVDLERGAGSGEVEYPDVNDDPAQRRGFDRLRTHGFSIQEVAALRSYFNAQVVAYAASREAEEGPDAETVEERRLRMEDEWMGRQGEESEFALNTNRVVATRAVFAARRGGMEDGRG--LEMGTGTSRDFLYGFIMGFALGFISLFWLWNVPQTHTQKMGIILGVSCSLGWNIIRRAEMEGETGEGGEEGSDFPPGFGG 451          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A7R9U1S3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1S3_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.390e-39
Identity = 101/244 (41.39%), Postives = 142/244 (58.20%), Query Frame = 1
Query:  259 TSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDF--GLTENCYVHCVVTAAPP--RLRLPSLTPEQA-AEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTS-------GPGGLGG---MAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLV 945
            T TV + K+ V++ + A  KY+RLI++G+ML P+ ALV+ F   L +  +VH VVTA P   RLR   L P  A A E+ +E DP S  GFD LR++G+ R+EV  +R+YF   +R+ A  L    REG+++ D Q+  EE W+  Q   SE+  N    RR S       G   L        G+   D    G  RDF++GF MG FLGVIML WLWE +V +RQK+GI+ GV+ + +++ V
Sbjct:   27 TQTVLEAKKAVAQLLNAGDKYVRLIASGRMLAPDAALVEQFCPPLQDGAFVHAVVTAKPNPGRLRASLLRPTPAGATEDDDEVDPTSLHGFDRLRSSGFGRAEVLALRSYFRRHLRDHAEQL--QQREGESNRDFQMRVEEDWVAQQGRGSEWDFNTR--RRESLGDDIEEGSRSLSNAHVFGPGLGDMDVAAPGSMRDFVWGFFMGFFLGVIMLFWLWERSVSQRQKMGIIFGVSLQLSLNFV 266          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A7S2SSC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSC9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.470e-38
Identity = 110/268 (41.04%), Postives = 150/268 (55.97%), Query Frame = 1
Query:  172 GAVEEGDSTLSLRVKTAGDG---REYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAA---EEEIEEEDPASRR-GFDALRNNGYARSEVTTIRAYFSAQVREFAASL--PPSD-REGQTDWDRQVEAEELWMRAQPATSEFSLNV--------SLARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVT 921
            G  E G + + LRVKTA  G    E+ V++ L   V + K  V   +GA+GKYLRLI +G+ML P  A +  F L     +H VV+ APPR   PS    +A     +  EEE  A RR GFDALRN G  RS V ++RAYF++QV E+A S   P  D ++G+T+  R++  E+ W+ AQ    EF+ N              TSG G  G +   +    ++GS   RDF++GF +G F GVIML WLWE     RQK+GI+AG++
Sbjct:   19 GRGEGGANAVRLRVKTANHGDVNAEHWVTARLGDPVDRLKRRVEEVVGAQGKYLRLICSGRMLAPPTAPLSSFKLKNEDVIHAVVSDAPPRNSYPSGPTSEARVADSDSDEEEGGAGRRLGFDALRNRGLTRSGVESLRAYFASQVDEYARSQGSPLFDLQDGETEQHRRLRWEDAWIHAQSEHGEFAANFMPDPFAAPENMDATSGEG-WGQVNDEVGSPLEEGS--YRDFVWGFFLGFFFGVIMLFWLWEHG-SYRQKMGIMAGIS 282          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: W4HE28_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HE28_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.350e-35
Identity = 98/262 (37.40%), Postives = 140/262 (53.44%), Query Frame = 1
Query:  193 STLSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDD----DGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRG 966
            S L+LRVKT  + +  ++  S T++V + K+ +     AEGK+LRLI  GKMLN + A +    + +N ++HC ++ APP+  +  +T +Q   EE   ++P  RRGFD LR+   +R +V  +R +F  QV    +      REG++  DR    EE WM AQ   SEF+LNV   R   GP  +   A       D    D  G T D ++G AMG  LG  ML  LWE  +PRRQKLGI+ GV     ++ +Q     G
Sbjct:   29 SILNLRVKTLSE-KPLNIDISATASVGELKDMIKAKGEAEGKFLRLIHQGKMLNDDKAALLSCNIKQNDFIHCAMSNAPPKSLVQQMTHQQ---EEAALDEPTHRRGFDCLRDT-LSREDVQALRLHFYPQVSTMISQSVA--REGESVEDRIYRIEEEWMAAQGPQSEFALNV---RPRGGPMTIHDSAHHRIDMPDMSSVDNEGTTVDMVWGVAMGFVLGFFMLFLLWERTIPRRQKLGIVIGVAINLLLNFMQRLTPEG 280          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A0P1ADY7_PLAHL (Ubiquitin family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADY7_PLAHL)

HSP 1 Score: 138 bits (348), Expect = 7.390e-35
Identity = 95/253 (37.55%), Postives = 149/253 (58.89%), Query Frame = 1
Query:  205 LRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDR-EGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARR--TSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAA 954
            L+VKT  + +   V    +++VA+ KE V + + AEGK+LRLI  GKML+ + A ++   + ++ +VHC ++AAPP+  +  +     A E  E++D  +RRGFD LR+   +R E+  +R YF  Q+  F   +  ++R  G++  DR    EE WM +Q   SEF+LNV    R  T     + GM+  I   D++G+G   +F++GF MG  LGV MLL L + +VPR+QK+G+L GV+    +S+V  A
Sbjct:   35 LKVKTLSE-KPLRVEIVHSASVAELKELVKKKVNAEGKFLRLIHQGKMLSDDKATLESCKVKDDDFVHCAISAAPPKAIINQVA--STAIELEEQDDETTRRGFDRLRDR-LSREEIQALRLYFYPQLSVF---ISRAERIHGESSEDRIYRLEEEWMASQGPQSEFALNVVPTARIATDTQIDINGMSNSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRA 278          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: G4YL67_PHYSP (Ubiquitin-like domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=G4YL67_PHYSP)

HSP 1 Score: 137 bits (346), Expect = 1.670e-34
Identity = 92/255 (36.08%), Postives = 145/255 (56.86%), Query Frame = 1
Query:  205 LRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREF---AASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPG--GLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAA 954
            L++KT  + +   V  + +S+V + KE V +   AEGK+LRLI  GKML+ + A ++   +    ++HC +++APP+  +  +       +  E +DPA+RRGFD LR+   +R E+  +R YF  Q+  +   AA +P     G++  DR    EE WM +Q   SEF+LNV    R +      + GM   I   D++G+G   +F++GF MG  LGV MLL L + +VPR+QK+G+L GV+    +S+V  A
Sbjct:   39 LKIKTLSE-KPLRVEVAPSSSVGELKELVKKKANAEGKFLRLIHQGKMLSDDKATLESCKVKNEDFIHCAISSAPPKAVVNQMAAAGTDSDPEERDDPATRRGFDRLRDR-LSREEIQALRLYFYPQLSVYISQAARVP-----GESSEDRIYRLEEEWMASQGPQSEFALNVVPTARIAMDTQIDMNGMNNSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKVGLLLGVSMNFFLSVVPRA 284          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A024USD5_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USD5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.050e-34
Identity = 93/262 (35.50%), Postives = 138/262 (52.67%), Query Frame = 1
Query:  199 LSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDD------DGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLVQAANRRG 966
            L+LRVKT  + +  ++  + T+TV   K+ +     AEGK+LRLI  GK+LN + A++    +  N ++HC +++ PP+  +  +T +Q   +++  ++P  RRGFD LR+    R EV  +R +F  QV    +      REG++  DR    EE WM AQ   SEF+LNV   R   G   +      I   D       D  G T D ++G AMG  LG  ML  LWE ++PRRQKLGI+ GV     ++ +Q     G
Sbjct:   31 LTLRVKTLSE-KPLNIDINATATVGDLKDMIKTKGHAEGKFLRLIHQGKLLNDDKAVLLSSNVKNNDFIHCAMSSVPPKSLVQQMTHQQ---DDVASDEPNHRRGFDCLRDT-LTREEVQALRLHFYPQVSAMISQSVA--REGESVEDRIYRVEEEWMAAQGPQSEFALNV---RPRGGHITMESFHDSIHRIDMPDMPLIDNEGTTVDMIWGVAMGLILGFFMLFLLWERSIPRRQKLGIVVGVAINLLLNFMQRLTPEG 282          
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Match: A0A2D4BQE0_PYTIN (Ubiquitin family protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQE0_PYTIN)

HSP 1 Score: 135 bits (340), Expect = 1.370e-33
Identity = 92/252 (36.51%), Postives = 141/252 (55.95%), Query Frame = 1
Query:  190 DSTLSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGKMLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEEDPASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWDRQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDDDGSGGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLV 945
            D  L L+VKT  + +   V    T+TV + KE V +   AEGK+LRLI  GKML+ + A ++ + +    ++HC ++AAPP+  +  ++ +Q  EE    EDP+ RRGFD LR+   +R EV  +R Y    +  + +        G++  DR    EE WM +Q   SEF+LNV    R +       +   I   D++G+G   +F++GF MG  LGV MLL L + +VPR+QK+G+L GV+    +S+V
Sbjct:   43 DDRLVLKVKTMTE-KPIVVEIVATATVGELKEIVKKQTNAEGKFLRLIHQGKMLSDDKATLESYKIKSEDFIHCAISAAPPKAVVNQMSADQEPEER---EDPSRRRGFDRLRDR-LSREEVQALRLYXYPXLSLYISQAERVP--GESSEDRIYRLEEEWMASQGPHSEFALNVVPTARIAMDQMDANVDSSILAADNEGTG--TEFLWGFLMGLLLGVFMLLMLLDRSVPRKQKIGLLLGVSMNFFLSVV 285          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWP2_9PHAE3.070e-8450.00DUF2407_C domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z7C3_9STRA7.190e-4939.05Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
A0A4D9DA21_9STRA1.200e-4037.81Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A7R9U1S3_9STRA1.390e-3941.39Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SSC9_9STRA4.470e-3841.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4HE28_9STRA1.350e-3537.40Ubiquitin-like domain-containing protein n=2 Tax=A... [more]
A0A0P1ADY7_PLAHL7.390e-3537.55Ubiquitin family n=1 Tax=Plasmopara halstedii TaxI... [more]
G4YL67_PHYSP1.670e-3436.08Ubiquitin-like domain-containing protein n=16 Tax=... [more]
A0A024USD5_9STRA4.050e-3435.50Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A2D4BQE0_PYTIN1.370e-3336.51Ubiquitin family protein, putative n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:339235..343186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue9.7e-31
Seed eggNOG ortholog42099.EPrPV00000018114
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin family protein. Source PGD
EggNOG OGs1MBBI@121069,28PYT@1,2QWME@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons7
Model size1084
Cds size942
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.229551-UTR-C-linearis_contig112:339234..3392791622927493.229551-UTR-C-linearis_contig112:339234..339279Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 339235..339279 +
1690879730.6317184-UTR-C-linearis_contig112:339234..3392791690879730.6317184-UTR-C-linearis_contig112:339234..339279Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 339235..339279 +
1622927493.3287923-UTR-C-linearis_contig112:343089..3431861622927493.3287923-UTR-C-linearis_contig112:343089..343186Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 343090..343186 +
1690879730.716149-UTR-C-linearis_contig112:343089..3431861690879730.716149-UTR-C-linearis_contig112:343089..343186Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 343090..343186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.2464707-CDS-C-linearis_contig112:339279..3395101622927493.2464707-CDS-C-linearis_contig112:339279..339510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 339280..339510 +
1690879730.643954-CDS-C-linearis_contig112:339279..3395101690879730.643954-CDS-C-linearis_contig112:339279..339510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 339280..339510 +
1622927493.2617152-CDS-C-linearis_contig112:340599..3406701622927493.2617152-CDS-C-linearis_contig112:340599..340670Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 340600..340670 +
1690879730.65407-CDS-C-linearis_contig112:340599..3406701690879730.65407-CDS-C-linearis_contig112:340599..340670Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 340600..340670 +
1622927493.2737947-CDS-C-linearis_contig112:341181..3413111622927493.2737947-CDS-C-linearis_contig112:341181..341311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 341182..341311 +
1690879730.6672015-CDS-C-linearis_contig112:341181..3413111690879730.6672015-CDS-C-linearis_contig112:341181..341311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 341182..341311 +
1622927493.2843003-CDS-C-linearis_contig112:341582..3416991622927493.2843003-CDS-C-linearis_contig112:341582..341699Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 341583..341699 +
1690879730.6761625-CDS-C-linearis_contig112:341582..3416991690879730.6761625-CDS-C-linearis_contig112:341582..341699Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 341583..341699 +
1622927493.2939334-CDS-C-linearis_contig112:342009..3421271622927493.2939334-CDS-C-linearis_contig112:342009..342127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 342010..342127 +
1690879730.684517-CDS-C-linearis_contig112:342009..3421271690879730.684517-CDS-C-linearis_contig112:342009..342127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 342010..342127 +
1622927493.3073354-CDS-C-linearis_contig112:342387..3425281622927493.3073354-CDS-C-linearis_contig112:342387..342528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 342388..342528 +
1690879730.6965494-CDS-C-linearis_contig112:342387..3425281690879730.6965494-CDS-C-linearis_contig112:342387..342528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 342388..342528 +
1622927493.319068-CDS-C-linearis_contig112:342955..3430891622927493.319068-CDS-C-linearis_contig112:342955..343089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 342956..343089 +
1690879730.7054722-CDS-C-linearis_contig112:342955..3430891690879730.7054722-CDS-C-linearis_contig112:342955..343089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 342956..343089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1536.1prot_C-linearis_contig112.1536.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 339280..343089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1536.1

>prot_C-linearis_contig112.1536.1 ID=prot_C-linearis_contig112.1536.1|Name=mRNA_C-linearis_contig112.1536.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=314bp
MSPAVEDTIPVVQSSVPLLSRRRGTLSNSSSSVKNDASDMELGAVEEGDS
TLSLRVKTAGDGREYSVSSSLTSTVAQFKEEVSRAIGAEGKYLRLISAGK
MLNPEDALVKDFGLTENCYVHCVVTAAPPRLRLPSLTPEQAAEEEIEEED
PASRRGFDALRNNGYARSEVTTIRAYFSAQVREFAASLPPSDREGQTDWD
RQVEAEELWMRAQPATSEFSLNVSLARRTSGPGGLGGMAQGIDGFDDDGS
GGTRDFMFGFAMGAFLGVIMLLWLWEAAVPRRQKLGILAGVTFKQTVSLV
QAANRRGDEDEAE*
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mRNA from alignment at C-linearis_contig112:339235..343186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1536.1 ID=mRNA_C-linearis_contig112.1536.1|Name=mRNA_C-linearis_contig112.1536.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3952bp|location=Sequence derived from alignment at C-linearis_contig112:339235..343186+ (Chordaria linearis ClinC8C monoicous)
ATTTTATCCCTTTTTTCCTCTTTGAACGCCGCAGAACGTGGGGCGATGTC CCCCGCCGTCGAAGACACCATCCCAGTGGTGCAGTCGTCCGTTCCCCTCC TCTCCCGACGGCGAGGCACCCTGTCCAATTCCTCCTCCTCGGTCAAAAAT GACGCCTCGGACATGGAGCTCGGAGCGGTCGAGGAGGGCGACTCCACCCT GAGCCTTCGCGTCAAGACGGCGGGAGATGGGAGGGAGTACAGCGTTTCGA GCTCGCTCACGTCCACGGTCGCTCAGGTTTGTTTGTGTTTGTTGGTTTTG CGCTTGAGCTGCTTGGTTATGAGTTTCAATATTGAACAATTTTGGTGGGA TGCATACATACACATCTCGGCAGTAATTTAGTTCGACAGCAGTCTTCACT TTCTCCTTCCCTTTTCTCGGAACTCTCCGTCCCCCCTTATCTGCTCGGGG GTACTGTATACCGAGCGGATCGATAACGGCAGTAGCTCCTCGCATTGAGG CCTTACAGAGATAGCATCCAGAAATAGTAGTTTGAAATATTCGAATGTAT AGCAGTTTCTGGCCCACAGGGTAGAGGGTAGTTGTATTCACCACGGCGGT ACCCTCTCGCCGCCTCCCCAACGCAAAAGTGTGTTGTCTTGATGTACATT GGCACCCCTGCGTTTCCTATCCTTGGATGCAGTCTAGTCTACTGGGCAGC AGGCTGCTGCGTATCAAGCTCGTATAGTAACTTTTGAGAGTCTGCCATGC GGGTGGCGTCCATGTTTTCCTATTGCGTTGCAGCGGGCGGAAAAGGAGAA ATCTTAATCTTTCGGAAGGCTAAATACTTTTAATCCGTGCCTCTGCAACC CTCTCTCGAGATAGCCCCCCTTCCCTGCAGTCCTGCTGCATGGATCACGT GTCGAGTTTTTCTGTAACATGACGTGCCAGTAAACACACCCGCTTTGCTG CTTGCCCATACCTACATACTGACCCCAAACAAAGCACGTAAACCAGCGTC TTTGACGTGAAAAAACAAAAAAACAGCCCCGCCAGCTGCGACAGGTTGGC ACCAATGATGACAAAATAAAAATAACCTCTGGCTGCGGCTGTACGTCTCA TGTCTCATGTCTCATGTCTCAGCTTTGCTCTGTTTCGGTGGCAAGAAGCC CCTTCCACGAACCTTCCCTTTGACACGTGCGGACTTTATCCTGCATCCTT GCAATTACGCACTTTTGACATTTTTCCAAACATGCCGCCCCCGCCGTGTT CTATGCGTCATCATACCTGGTACCAGGTATGTGGTATGTACATATATTTA CCCCCAAACGAAATAAAACCATCAATAAACACGTCCGTCCGTCCATCCGC CCGCCCCCCCAACAGTTCAAGGAGGAGGTCTCTCGAGCAATCGGAGCGGA GGGCAAGTATCTGCGGCTCATCTCTGCGGGCAAGATGTGAGTCTCGTATC CTCGTCGTTTGTGTTATGCGACGTTTATGGCGTCGGTGCCAAATGTGTGT GTGCGTGTTTGTGTTTACCGGGGGGTATCATGGTCCCTCCCCACCGAGGG ACTTCTTCTTCGTTGCGAAACGGCGTCGGGTGCCGTGGTTAGTTTCTCGT GAGCATCACGGCGTTGCAAATCGTTTGCCTGATGCTACGCACTTTGCTTG GTCTTGCTTTGTCTTGCCTTGCCCTGCCTTGCCTTGCCTTGCCTTGCCTG ACCCTTGCGCCTGCCACACTCGCGGCGACTCTTGCAGTTGTGCAGACGTT GTTGTTGTTGTTGTTGTTACCTGTTCTTGTTTTATGATCCAAGTCGAACG CACCTGTGGTCCAGTGCGGAATCATCTACCCGCGCACAGCTTCGGCTTGC ACAGGTCGCACTTAACCATCCCCATCATCCACCAAACTAACGCCAACTGG GCGTTTCTACGCCCTTTGCACTGCGTGGTTGATGGTGGAAATATTAGGCT GAACCCGGAAGACGCGCTGGTGAAGGACTTCGGCCTCACGGAGAACTGCT ACGTCCACTGCGTCGTGACGGCCGCGCCGCCGCGACTGCGGCTGCCCTCG CTGACCCCGGAGCAGGCCGCAGAAGAGGTGAGTGTTGAGTGTATGCATAA TAGGCATCTCTCTGAAGTAGTAGGCCGTGTGTGTGGGATGCACATTCCCC TCGCCAAACAGAGAAAGATAAAGATCGTGCAGATATCAGCAGCGCTTGGC GGGTGCGATCAAAGTGCAGCACCACACGCCACACTGTTGCCGTGGTGCTC TTGGCAAAGTTCGCACCAATACCGAGCTCACTCTAAAAAGTTATTTTAAT CTCCTTTTGCCATCTCCAAACTTGCTCGTGATCTCATGAATTGTGCAGGA GATCGAGGAAGAGGACCCCGCATCTCGACGAGGCTTCGACGCCCTTAGGA ATAACGGCTACGCCAGGAGCGAAGTCACGACCATACGAGCATACTTCAGC GCGCAAGTGCGAGAGGTCAGTTCCGATCAGCCGAGGGACGCTCTACGTAC ACACTCTTTCAGGATGCGGCAGTGGCGGAGGGAAACCTGAAGGCAGAAGA TAGAAGCAGTGATTTTGCAGTTACTTGTTTCCCCCGGTCTGATTGAAACC GAAGTGCCTTCTTTTTGCTGGCCCTGCGGTGCCGACACGGCTGCGCCAAT GCCTATCCTTCTCCAGCAGTGTGCGCTTTTCGCGATTTCAGCACCCCAAC CCCCTTGCCCGCACCTCTCACTTCCTCCCCCTGTTTCTGTCTCCTGGTCG TGTGCCCCCCTCCGCGAAATACCAGTTCGCTGCTAGTTTGCCACCATCCG ACCGAGAAGGGCAAACGGACTGGGATCGCCAGGTAGAGGCTGAGGAGCTT TGGATGCGAGCGCAGCCGGCGACGTCCGAGTTTTCTCTGAACGGTAAGCA AGCGAGTGCATGCATCCATGGCGGTATGGGGTCAAGGCTTGGCTGCCATA CAACCTACACATGAAGCACGAGGGGTGTTGTTTCGGTAGTTTCCTCCCCC CCCCACCAAGCAGACAACTATCTTCAATTTACTATGATATGTGGCCCAAT ATCAACCCCTTTCGTTTGTGCTGTATGTTTCATACGGAGGCTTAATTTTT TCATAGTCGTTCCTCGGGTTTGTTGGCATGAAAATGGACGTGAACATCAA CAGTGAGCTTGGCGAGACGGACGTCGGGCCCAGGGGGGCTCGGTGGTATG GCGCAGGGGATAGACGGGTTCGACGATGACGGGTCGGGCGGGACGCGGGA CTTTATGTTTGGCTTCGCCATGGGGGCTTTCCTGGGCGTGATAAGTGAGT GCCGTACATAGTTTTGCAGCAAGCGGCGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGCCGTTCATGTGTGCGTTGCACG CGGGCTTGTCTCCGGTTTGCTTGTGAAAAGCGTGCTTGTTTGTTCGCGGC CCTCCACGGTTCCACGTAGCTTGTTGTTGGTAATTCTATTTGGTCTTCGG CTTTTCAGGTCGATCCGATGCTGTTCGTGTTCGTTTTTCCCTCGTTTGTT TTTCTTCCTGGGGACTCGCGTACGTATGCACTTCGAAGTATGCGTTCAGT TTCTTTTTTTTTGCTCCTCGTTCGTTTGTTTTCTCTTGAGCGCCTTGTAT ACCGGTTGTCATCGCCATCTCCATCGGCCCGTCCTGCCCCCATGCCTTGC TCCTCGATGCATACGGTACAGTGCTGCTCTGGCTCTGGGAAGCGGCGGTT CCAAGACGCCAAAAGCTGGGCATCCTGGCCGGCGTGACGTTCAAGCAGAC CGTGTCGTTGGTGCAGGCGGCCAACCGACGAGGCGATGAGGACGAGGCGG AGTGAGGTGAAGCGACGCCGTAGGGAGAGGATGGGTGCCGCACTCATATG GTCGTTTCCCTGTTCTGCCTCGCTCAAGTGTTGGTAGAGGTTGGGTCAGG GG
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Coding sequence (CDS) from alignment at C-linearis_contig112:339235..343186+

>mRNA_C-linearis_contig112.1536.1 ID=mRNA_C-linearis_contig112.1536.1|Name=mRNA_C-linearis_contig112.1536.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at C-linearis_contig112:339235..343186+ (Chordaria linearis ClinC8C monoicous)
ATGTCCCCCGCCGTCGAAGACACCATCCCAGTGGTGCAGTCGTCCGTTCC
CCTCCTCTCCCGACGGCGAGGCACCCTGTCCAATTCCTCCTCCTCGGTCA
AAAATGACGCCTCGGACATGGAGCTCGGAGCGGTCGAGGAGGGCGACTCC
ACCCTGAGCCTTCGCGTCAAGACGGCGGGAGATGGGAGGGAGTACAGCGT
TTCGAGCTCGCTCACGTCCACGGTCGCTCAGATGTCCCCCGCCGTCGAAG
ACACCATCCCAGTGGTGCAGTCGTCCGTTCCCCTCCTCTCCCGACGGCGA
GGCACCCTGTCCAATTCCTCCTCCTCGGTCAAAAATGACGCCTCGGACAT
GGAGCTCGGAGCGGTCGAGGAGGGCGACTCCACCCTGAGCCTTCGCGTCA
AGACGGCGGGAGATGGGAGGGAGTACAGCGTTTCGAGCTCGCTCACGTCC
ACGGTCGCTCAGTTCAAGGAGGAGGTCTCTCGAGCAATCGGAGCGGAGGG
CAAGTATCTGCGGCTCATCTCTGCGGGCAAGATTTCAAGGAGGAGGTCTC
TCGAGCAATCGGAGCGGAGGGCAAGTATCTGCGGCTCATCTCTGCGGGCA
AGATGCTGAACCCGGAAGACGCGCTGGTGAAGGACTTCGGCCTCACGGAG
AACTGCTACGTCCACTGCGTCGTGACGGCCGCGCCGCCGCGACTGCGGCT
GCCCTCGCTGACCCCGGAGCAGGCCGCAGAAGAGGCTGAACCCGGAAGAC
GCGCTGGTGAAGGACTTCGGCCTCACGGAGAACTGCTACGTCCACTGCGT
CGTGACGGCCGCGCCGCCGCGACTGCGGCTGCCCTCGCTGACCCCGGAGC
AGGCCGCAGAAGAGGAGATCGAGGAAGAGGACCCCGCATCTCGACGAGGC
TTCGACGCCCTTAGGAATAACGGCTACGCCAGGAGCGAAGTCACGACCAT
ACGAGCATACTTCAGCGCGCAAGTGCGAGAGGAGATCGAGGAAGAGGACC
CCGCATCTCGACGAGGCTTCGACGCCCTTAGGAATAACGGCTACGCCAGG
AGCGAAGTCACGACCATACGAGCATACTTCAGCGCGCAAGTGCGAGAGTT
CGCTGCTAGTTTGCCACCATCCGACCGAGAAGGGCAAACGGACTGGGATC
GCCAGGTAGAGGCTGAGGAGCTTTGGATGCGAGCGCAGCCGGCGACGTCC
GAGTTTTCTCTGAACGTTCGCTGCTAGTTTGCCACCATCCGACCGAGAAG
GGCAAACGGACTGGGATCGCCAGGTAGAGGCTGAGGAGCTTTGGATGCGA
GCGCAGCCGGCGACGTCCGAGTTTTCTCTGAACGTGAGCTTGGCGAGACG
GACGTCGGGCCCAGGGGGGCTCGGTGGTATGGCGCAGGGGATAGACGGGT
TCGACGATGACGGGTCGGGCGGGACGCGGGACTTTATGTTTGGCTTCGCC
ATGGGGGCTTTCCTGGGCGTGATAATGAGCTTGGCGAGACGGACGTCGGG
CCCAGGGGGGCTCGGTGGTATGGCGCAGGGGATAGACGGGTTCGACGATG
ACGGGTCGGGCGGGACGCGGGACTTTATGTTTGGCTTCGCCATGGGGGCT
TTCCTGGGCGTGATAATGCTGCTCTGGCTCTGGGAAGCGGCGGTTCCAAG
ACGCCAAAAGCTGGGCATCCTGGCCGGCGTGACGTTCAAGCAGACCGTGT
CGTTGGTGCAGGCGGCCAACCGACGAGGCGATGAGGACGAGGCGGAGTGA
TGCTGCTCTGGCTCTGGGAAGCGGCGGTTCCAAGACGCCAAAAGCTGGGC
ATCCTGGCCGGCGTGACGTTCAAGCAGACCGTGTCGTTGGTGCAGGCGGC
CAACCGACGAGGCGATGAGGACGAGGCGGAGTGA
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