mRNA_C-linearis_contig112.1525.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1525.1
Unique NamemRNA_C-linearis_contig112.1525.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:249154..249888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size722
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1525.1prot_C-linearis_contig112.1525.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 249391..249858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927486.277228-UTR-C-linearis_contig112:249153..2493621622927486.277228-UTR-C-linearis_contig112:249153..249362Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 249154..249362 +
1690879728.3762426-UTR-C-linearis_contig112:249153..2493621690879728.3762426-UTR-C-linearis_contig112:249153..249362Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 249154..249362 +
1622927486.2909062-UTR-C-linearis_contig112:249375..2493901622927486.2909062-UTR-C-linearis_contig112:249375..249390Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 249376..249390 +
1690879728.3891706-UTR-C-linearis_contig112:249375..2493901690879728.3891706-UTR-C-linearis_contig112:249375..249390Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 249376..249390 +
1622927486.318382-UTR-C-linearis_contig112:249858..2498881622927486.318382-UTR-C-linearis_contig112:249858..249888Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 249859..249888 +
1690879728.4106507-UTR-C-linearis_contig112:249858..2498881690879728.4106507-UTR-C-linearis_contig112:249858..249888Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 249859..249888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927486.305238-CDS-C-linearis_contig112:249390..2498581622927486.305238-CDS-C-linearis_contig112:249390..249858Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 249391..249858 +
1690879728.3989508-CDS-C-linearis_contig112:249390..2498581690879728.3989508-CDS-C-linearis_contig112:249390..249858Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 249391..249858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1525.1

>prot_C-linearis_contig112.1525.1 ID=prot_C-linearis_contig112.1525.1|Name=mRNA_C-linearis_contig112.1525.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MQKLFAPKNDRSRFGEDYTNCTTKDSLDCQSVVRRRSRMFRLFQRYFWGE
RRRENESTIHIHPGLVVRPREHADQSCRRLATGSAHETRAFVLLSSSPGW
FWFLTSSLSLLSLAAELSDPFCIRPGGVTFVRGKNGTPKQKEPNNHQPPF
RSVAT*
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mRNA from alignment at C-linearis_contig112:249154..249888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1525.1 ID=mRNA_C-linearis_contig112.1525.1|Name=mRNA_C-linearis_contig112.1525.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at C-linearis_contig112:249154..249888+ (Chordaria linearis ClinC8C monoicous)
CTTTCGGGTTGGAGAAACACGCAGGTCAGGGGTCGACCACCCGACCCTGA
ACACGCCGCCTTGGAGCGTCCAACTTCCCGTGTGAGAGCAGGAACGGTCT
CCCCTTCCTCGCGCCAGAAAACTCGACCACTCAAAGGCGACGGCGGGAGG
GTCTTGGTGGTGGCACCGCCGCACCCGGAGGTCTGAAAACCCCACCGCCG
CCGAGGTCGGTAGTGACACCCCGGCGGCTTTGTAGCGATGCAAAAACTTT
TTGCCCCGAAAAACGACAGATCACGCTTTGGTGAGGATTATACTAACTGT
ACCACCAAGGATAGTCTAGACTGTCAATCTGTAGTCAGGCGTCGTTCGCG
GATGTTCCGCCTTTTTCAGCGTTACTTCTGGGGAGAACGAAGGCGCGAGA
ACGAATCCACCATACATATCCACCCTGGTCTAGTCGTTCGTCCACGTGAG
CACGCAGACCAGAGCTGCCGCCGCTTGGCCACTGGAAGTGCACATGAGAC
TCGCGCGTTTGTTTTGCTTAGTTCTAGTCCTGGGTGGTTTTGGTTCCTGA
CCAGCTCTCTGTCCTTACTCTCTCTAGCGGCGGAGCTCTCTGACCCCTTC
TGCATACGGCCTGGCGGAGTGACTTTCGTCCGCGGGAAAAATGGGACCCC
CAAGCAAAAAGAGCCAAACAACCATCAACCACCCTTTCGCTCTGTGGCGA
CGTGAAATTAATTTGGGCGGAGGCGGCGAAGGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig112:249154..249888+

>mRNA_C-linearis_contig112.1525.1 ID=mRNA_C-linearis_contig112.1525.1|Name=mRNA_C-linearis_contig112.1525.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at C-linearis_contig112:249154..249888+ (Chordaria linearis ClinC8C monoicous)
ATGCAAAAACTTTTTGCCCCGAAAAACGACAGATCACGCTTTGGTGAGGA
TTATACTAACTGTACCACCAAGGATAGTCTAGACTGTCAATCTGTAGTCA
GGCGTCGTTCGCGGATGTTCCGCCTTTTTCAGCGTTACTTCTGGGGAGAA
CGAAGGCGCGAGAACGAATCCACCATACATATCCACCCTGGTCTAGTCGT
TCGTCCACGTGAGCACGCAGACCAGAGCTGCCGCCGCTTGGCCACTGGAA
GTGCACATGAGACTCGCGCGTTTGTTTTGCTTAGTTCTAGTCCTGGGTGG
TTTTGGTTCCTGACCAGCTCTCTGTCCTTACTCTCTCTAGCGGCGGAGCT
CTCTGACCCCTTCTGCATACGGCCTGGCGGAGTGACTTTCGTCCGCGGGA
AAAATGGGACCCCCAAGCAAAAAGAGCCAAACAACCATCAACCACCCTTT
CGCTCTGTGGCGACGTGAATGCAAAAACTTTTTGCCCCGAAAAACGACAG
ATCACGCTTTGGTGAGGATTATACTAACTGTACCACCAAGGATAGTCTAG
ACTGTCAATCTGTAGTCAGGCGTCGTTCGCGGATGTTCCGCCTTTTTCAG
CGTTACTTCTGGGGAGAACGAAGGCGCGAGAACGAATCCACCATACATAT
CCACCCTGGTCTAGTCGTTCGTCCACGTGAGCACGCAGACCAGAGCTGCC
GCCGCTTGGCCACTGGAAGTGCACATGAGACTCGCGCGTTTGTTTTGCTT
AGTTCTAGTCCTGGGTGGTTTTGGTTCCTGACCAGCTCTCTGTCCTTACT
CTCTCTAGCGGCGGAGCTCTCTGACCCCTTCTGCATACGGCCTGGCGGAG
TGACTTTCGTCCGCGGGAAAAATGGGACCCCCAAGCAAAAAGAGCCAAAC
AACCATCAACCACCCTTTCGCTCTGTGGCGACGTGA
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