mRNA_C-linearis_contig112.1524.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1524.1
Unique NamemRNA_C-linearis_contig112.1524.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 555 bits (1430), Expect = 6.580e-193
Identity = 299/493 (60.65%), Postives = 360/493 (73.02%), Query Frame = 1
Query:    1 MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKRQVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERVCSSLQAQSQHQQVQQMPSNQIEQDETKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAFVS-------VVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRASRA---IAAAP-VDNSTISV--ARPVDDSIDPATGLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADLIQKAIRIVCVP 1440
            + N+++DAS+G V V SM+    P L+  G+L++V  +L DY+GP +S R + GR+      E+C  ILD ++G  W  WR  SG+ FK++LR  VE V SS Q + Q             Q   K ++L  ALR++NI+GSVRID+  G ASIID  RL+CP AS   AA M TRVLEKE  DGGN+ +   Q P PI  ADRV YI+INGHGN+TP  DAKT++EIIWLLP+ AAKE RRQSAETICRVLGGD+SLC EIEQRCA L+S EEGR YQ+FV DQGPAKK R+  P WFEYA+ E+K A++S       V+AKKA+ L EID+ +TCK++L+S+G F  RD+IEFADRIKD+QRRA+R    I AAP VD S +SV  A PVDD+IDP TGLL ATPKCS SVRGPETSIC EAGKMGI VGEKAGQVGK VK LYSERYG EAGRNIPKR TTFRGKPF EN+Y+ARD+DLIQ+ IRIVC P
Sbjct:    5 INNIVIDASSGDVAVKSMIKNIMPNLSESGILKTVHRVLGDYNGPKMSTRLMNGRLACAATLELCFDILDKMTGPPWRKWREESGNAFKKALRERVESVRSSSQTE-QLXXXXXXXXXXPTQVGIKTAVLQNALRSININGSVRIDDGLGKASIIDTTRLVCPGASSAYAAQMFTRVLEKERDDGGNSFMQDAQHPTPI--ADRVDYIRINGHGNVTPVSDAKTIVEIIWLLPSGAAKEFRRQSAETICRVLGGDISLCGEIEQRCARLRSTEEGRAYQSFVTDQGPAKKQRAAMPAWFEYATAEEKRAYISIEATTSIVLAKKALVLGEIDVFKTCKEELKSVGQFDQRDEIEFADRIKDVQRRATRVDNMITAAPTVDTSPVSVCVAMPVDDTIDPETGLLTATPKCSPSVRGPETSICVEAGKMGISVGEKAGQVGKVVKRLYSERYGQEAGRNIPKRSTTFRGKPFSENTYYARDSDLIQRGIRIVCAP 494          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: D8LPL9_ECTSI (EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL9_ECTSI)

HSP 1 Score: 503 bits (1295), Expect = 2.820e-172
Identity = 272/488 (55.74%), Postives = 343/488 (70.29%), Query Frame = 1
Query:    1 MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKRQVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERVCSSLQAQSQHQQVQQMPSNQIEQDETKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAFVSVVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRASRA--IAAAP------VDNSTISVARPVDDSIDPATGLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADLIQKAIRIVCVP 1440
            M+++++DA+TG VGV +++    P L+   VL+ V   L+  SG ++ +  + GR T     ++C  ILD +SG  W  WR +SG  FK +LR  V  V SS Q +  H  VQQ      E  E KA +L KALR +NI+GSVR+DE++G+ S ID I +LCP ASPE+AAHMLTRVLEKE A G NNH P V  P+ +  ADR+  IKING GN TP  DA T IEIIWLLPA+AA+E R+QSA+TI RVLGGDVSLC EIEQRCA L++ E+GR YQ+ +  Q P KKH+S P  WFEYA+ +QKSA+V+   KK++ + E++MHE CK  LES+G FA RD+IE+ADRI+D QRRASRA  +  AP      V +S+  +A P D+SIDP TG LIAT K S SVRGPETSIC EA K+GI  GE+AGQVGK  K LY ++YG EA R+IP R TTFRGKPF E +Y++RDADLIQ+AIRIVC P
Sbjct:   24 MDSIMIDATTGVVGVKTLIWHIMPELHSSSVLKGVHRALEG-SGASMDRTLINGRFTKTATVDLCCDILDKMSGASWQQWRQSSGPAFKNALRERVASVVSSGQVEQAHPPVQQAE----EGVEKKAVVLRKALRAMNIEGSVRVDENTGMLSDIDVINMLCPGASPEDAAHMLTRVLEKEAAGGANNHGPTVHGPVAL--ADRIKRIKINGKGNPTPVSDAPTAIEIIWLLPARAAREFRKQSADTIARVLGGDVSLCAEIEQRCARLQNTEDGRAYQSVMTGQAPTKKHKSLPE-WFEYATSDQKSAYVAAKVKKSVVVTELEMHEVCKVGLESVGQFAGRDEIEYADRIRDTQRRASRADNLLGAPAPSPGDVGDSSTLIATPFDNSIDPETGKLIATHKVSASVRGPETSICVEAAKLGISTGERAGQVGKVAKRLYGQKYGEEANRDIPTRHTTFRGKPFVERTYFSRDADLIQQAIRIVCCP 503          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: Q8QN80_ESV1K (EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN80_ESV1K)

HSP 1 Score: 491 bits (1264), Expect = 1.390e-167
Identity = 263/488 (53.89%), Postives = 339/488 (69.47%), Query Frame = 1
Query:    1 MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKRQVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERVCSSLQAQSQHQQVQQMPSNQIEQDETKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAFVSVVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRASRA--IAAAP------VDNSTISVARPVDDSIDPATGLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADLIQKAIRIVCVP 1440
            M+++ +DA+TG VGV +++    P L+   VL+ V   LQD SG ++    + GR+T      +C  ILDN+ G  WD WR +SG  FK +LR HV  V SS Q +  H  VQQ     +E  ETKA +L K+LR +NI+GSVR+DE SG+ S ID I++LCPE + + A   L R+LE++  +  +N           P+ADRV Y+KING G++TP  DA T IEIIWLLPA+AA+E R+QSA+TI RVLGGDVSLC EIEQRCA L++ EEGR YQ+ +  + P KKH+S P  WFEYA+ +QKSA+V+   KK++ + EI+MHE CK  LES+G FA RD+IE+ADRI+D QRRASRA  +  AP      V +S + +A P+D+SIDP TG+LIAT K S SVRGPETSIC EA ++GI  GE+AGQVGK  K LY ERYG EA R+IP R TTFRGKPF E +Y++RDADLIQ+AIRIVC P
Sbjct:   24 MDSITIDATTGVVGVKTLIWHIMPQLHTSSVLKGVHRALQD-SGASMDTTLINGRLTKTATVGLCCSILDNMRGTKWDQWRQSSGPAFKDALREHVASVVSSGQVEQAHPPVQQADEQHVEGVETKAVVLRKSLRAMNIEGSVRVDERSGMVSDIDVIKMLCPEKNDDYAKIALKRILERQQQEADHNDSDSA------PLADRVHYLKINGVGHVTPVSDAPTAIEIIWLLPARAAREFRKQSADTIARVLGGDVSLCAEIEQRCARLQNTEEGRAYQSVMTGEAPPKKHKSLPE-WFEYATSDQKSAYVAAKVKKSVVVTEIEMHEICKVGLESVGQFAGRDEIEYADRIRDTQRRASRADNLLGAPAPSPAVVGDSAMLIATPIDNSIDPETGMLIATHKVSASVRGPETSICVEAARLGISTGERAGQVGKVAKRLYGERYGEEANRDIPTRHTTFRGKPFVERTYFSRDADLIQRAIRIVCCP 503          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: A0A6H5K200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K200_9PHAE)

HSP 1 Score: 483 bits (1243), Expect = 1.660e-164
Identity = 273/498 (54.82%), Postives = 337/498 (67.67%), Query Frame = 1
Query:    1 MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKRQVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERVCSSLQAQSQHQQVQQMPSNQIEQDE-TKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAFVS-------VVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRASRA---IAAAP-VDNSTISV--ARPVDDSIDPATGLLIATP----KCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADLIQKAIRIVCVP 1440
            + N+++DAS+G V V SM+    P L+  G+L++V  +L DY+GP +S R + GR+      E+C  ILD +SG  W  WR  SG+ FK++L   VE V SS  +Q++  Q+Q  P  Q  Q      ++L KALR++NI+GSVRID+  G  SIID  RL+C  A    AA M TRVLE+E  DGG++ +   Q+P PI  ADRV YI+INGHG +TP  D+KT++EIIWLLP+ +AKE RRQSAETICRVLGGD+SLC EIEQRCA L+S EEGR YQ+FV DQGPAKK R+  P WFEYA+ E+K A++S       V+AKKA+ L ++D+ ETCK+KL S+G F   D+IEFADRIKDIQRRA R    I AAP VD S ISV  A PVDD+IDP TG          K   SVRGPETSIC EAGKMG  V              YSERYG EAGR IPKR TTFRGKPF   +Y+ARD+DLIQ+AIRIVC P
Sbjct:    5 INNIVIDASSGDVAVKSMIKNIMPNLSEGGILKTVHRVLGDYNGPKMSTRLMNGRLACAATLELCYEILDKMSGPPWRKWREESGNAFKEALCERVESVRSS--SQTEQFQLQSPPQPQPPQKVGITTAVLQKALRSININGSVRIDDGCGKESIIDTTRLVCRGAYSAYAAQMFTRVLEEERNDGGSSFMRGEQTPTPI--ADRVDYIRINGHGKVTPVSDSKTIVEIIWLLPSGSAKEFRRQSAETICRVLGGDISLCGEIEQRCARLQSTEEGRAYQSFVTDQGPAKKQRAAMPAWFEYATAEEKRAYISIEATTSIVLAKKALVLRDVDVFETCKEKLNSVGQFDEGDEIEFADRIKDIQRRAKRVDNMITAAPAVDTSPISVCAAMPVDDTIDPETGEKAGQTGKVVKRLPSVRGPETSICVEAGKMGSSVXXXXXXXXXXXXXXYSERYGQEAGRKIPKRSTTFRGKPFSGKTYYARDSDLIQRAIRIVCAP 498          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 466 bits (1198), Expect = 7.680e-154
Identity = 267/482 (55.39%), Postives = 326/482 (67.63%), Query Frame = 1
Query:    1 MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKRQVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERVCSSLQAQSQHQQVQQMPSNQIEQDETKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAFVS-------VVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRASRA---IAAAP-VDNSTISV--ARPVDDSIDPATGLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADL 1407
            + N+++DAS+G V V SM+    P L+  G+L++V  +L D +GP +S R + GR+      E+C  ILD ++G  W  WR  SG+ FK +LR  VE V S+ Q + Q            +Q   K ++L  ALR++NI GSVRID+  G ASIID +RL+ P ASPE AA M TRVL+KE  D GN  V   Q+P PI  ADRV YI+ING G +TP  DAKT++EIIWLLP+ AAKE RRQSAETICRVLGGD+SLC EIEQRCA L+S EEGR YQ+F+ DQGPAKK R+  P  FEYA+ E+K A++S       V+AKKA+ L  ID+ ETCK+KL+S+G F  R +IEFADRIKD+QRRA+R    I AAP VD S +SV  A PVDD+ID  TGLLI TPKCS SVRGPETSIC EAGKMGI VGEKAGQVGK VK L                 TTFRGKPF EN+Y+A  A L
Sbjct:    5 INNIVIDASSGDVAVKSMIKNIMPNLSESGILKTVHRVLGDCNGPKMSTRLMNGRLACAATLELCFEILDTMTGPPWRKWRSESGNAFKGALRERVESVRSASQTE-QLXXXXXXXXXXPQQVGIKTAVLQNALRSINIHGSVRIDDGLGKASIIDTVRLISPTASPEYAAQMFTRVLQKERGDCGNTSVRDEQTPTPI--ADRVDYIRINGRGKVTPVSDAKTIVEIIWLLPSGAAKEFRRQSAETICRVLGGDISLCGEIEQRCARLQSTEEGRAYQSFMTDQGPAKKQRAAMPARFEYATAEEKRAYISIEATTSKVLAKKALVLRYIDVFETCKEKLKSVGQFDERAQIEFADRIKDVQRRATRVDNMITAAPAVDTSPVSVCVAMPVDDTIDTETGLLIETPKCSPSVRGPETSICVEAGKMGIGVGEKAGQVGKVVKRL-----------------TTFRGKPFSENTYYALFAVL 466          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 323 bits (829), Expect = 8.820e-104
Identity = 181/358 (50.56%), Postives = 238/358 (66.48%), Query Frame = 1
Query:  412 NIDGS-VRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQG--------PAKKHRS-EPPFWFEYASDEQKSAFVSVVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRASRA---IAAAPVDNSTI--SVARPVDDSIDPATGLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADLIQKAIRIVCVP 1440
            ++DGS +R+D+++ + S+ID IR++  E    NA   L R+              V+  P    + ++ + +K+NG G  TP  DAKTLIEI+WLLP + A   R Q    ICR+LGGD SL  EIE R A+L   EEGR  Q F ++            K+ RS E P WF+ A+ E+K AF S +  KAI  EE++M++ CK KLES+G F  RD IEF DR++D QRRA RA   + + PVD++ +  +VARPVDD+ID ATGL +ATP+CSESVRG ETSICNEA K+GI VGEK G++GK++   Y++RYGVEAG NIPKR TT+RGKPF EN YW+RDADL+Q+AIRIVC P
Sbjct:   24 SMDGSTIRVDKNTKLGSVIDTIRMVL-ECDSSNANTSLGRL--------------VLSHP---GLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGEEPSWFKNATAEEKRAFASTMVNKAIVSEEVEMYDFCKAKLESVGQFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGICVGEKGGEIGKELIRRYTKRYGVEAGLNIPKRPTTYRGKPFNENCYWSRDADLVQEAIRIVCSP 363          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: A0A6H5JG13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG13_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 7.880e-97
Identity = 203/505 (40.20%), Postives = 286/505 (56.63%), Query Frame = 1
Query:    1 MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKRQVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERV-CSSLQAQSQHQQVQQMPSNQIEQD--ETKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENA----DGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVM-----DQGPAKKHRSEPPFWFEYASDEQKSAFVS-------VVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRASRA--IAAAPVDN--STISVARPVDDSIDPAT----GLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKR-DTTFRGKPFPENSYWARDADLIQKAIRIV 1431
            M+N++VDA+ G VGV SM+  A+P L+   VL SV+  ++++ GP ++ + V+GR T++   + C+YILDN+ G  W  WR   G+ FK+SL  HV       ++        Q   + ++EQ+  ETK S L KA RT+NIDGSVRIDE SG AS++D IRLL P  S +NA  ML+R+LEK+        G    P   SPI        +  +    G +                  +AA+  RRQSAE I RVLGGDVSLC EIEQRCA L S  EGR+ Q F+      ++ PAK+ R  P    E+A++EQ   ++        V  ++AI   EI +  + K+  E +    PR KIE +DR+ D+Q+R  R    +A PV +  +  S + P ++++  AT    G    TP CS  VRG E SI   A +MG+ VG + G VGK +K LY+ERYG  A  NIPKR +T ++G+PF EN Y+ RD DL+++AIR+V
Sbjct:    1 MDNIVVDAA-GDVGVSSMIKAAKPELHSGSVLCSVRSAMKNFDGPGLTPKMVKGRTTTMASLDTCKYILDNMPGPRWVMWRSTQGNSFKESLTQHVAATHVQGVEDNVVEGVAQAAEAAEVEQEVAETKGSTLKKAFRTLNIDGSVRIDEASGKASVMDVIRLLSPGVSLDNARKMLSRLLEKDEVTELEQRGQLSGPQTHSPI------MCTTSRSTEKGGLP-----------------RAARSFRRQSAEVITRVLGGDVSLCGEIEQRCARLGSTSEGRSNQAFMSGENGTEEQPAKRTRVGPEI-MEFATEEQYEKYIKAGLQQEMVNIQQAIVKSEISLVMSLKEAFEKIQPLEPRQKIELSDRLSDVQKRYFRGGEESAMPVRDVRAITSSSTPAENAVVVATAVDPGHGTPTPNCSRDVRGAEVSIAMIATEMGVSVGGRGGLVGKNIKALYAERYGQNAANNIPKRKNTVYQGRPFKENMYFTRDRDLVERAIRMV 480          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: B5LW93_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW93_9PHYC)

HSP 1 Score: 291 bits (745), Expect = 4.000e-90
Identity = 182/501 (36.33%), Postives = 275/501 (54.89%), Query Frame = 1
Query:    1 MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKRQVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERVCSSLQAQSQHQQVQQMPSNQIEQDETKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAFVSVVAKKAIAL--------------------------EEIDMHETCKQKLESLGHFAP-RDKIEFADRIKDIQRRASRAIAAAPVDNSTISVARPVDDSIDPATGLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADLIQKAI 1422
            M+++IVD ++G +GV S+M    P ++   + R V+  L+D + P   KR +  R + ++  +   Y++D++       WR A+ D FK++LR+HV+   + L      + V           ETKAS+L   LR+VNI GS+R+DED+G+ S+ID ++++CP+     A   L RVLE+                 P  +AD V  +KING G++TP  DAKT+ EIIWLLP +AA+E RRQSAE + RVLGGD +LC EIE+R   L+S  EGR +QNF +     +K R       E+AS E    FV +  +  + +                           E+ +  + K+  +++   +  R KIE +D + DIQRRA R   +             V+ ++DP  G+ + TP C  ++RG E SI   +G+MG+ +G +AG  GKK+K LY  RYG +A  NIPKR T F+G+P+ EN+Y+ARD DL+Q+AI
Sbjct:    1 MDSIIVDRASGLIGVSSIMKQIVPTVSDSTMWRMVEKTLRDSAVP---KRHL--RKSRMLTLDEAFYLVDHVQFPLSSEWRAANADTFKENLRSHVQAKTAPLVGDGGGESV-----------ETKASVLQNCLRSVNIIGSIRVDEDTGLGSLIDIVKIVCPDMCKVYAKTTLARVLEEW----------------PHHVADCVKRLKINGRGHVTPVADAKTIAEIIWLLPGRAAREFRRQSAEIVMRVLGGDTTLCKEIEERSVGLQSTREGRAFQNFALGGESGEKKRLGGEL-MEHASSEDYERFVKMKVEHEMCVMEQXXXXXXXXXXXXXXXXQEEGKVDSELRIVASLKRGFDAVNSLSESRHKIELSDIVSDIQRRALRKSVS-------------VETAVDP--GVSVPTPDCPANIRGEEVSIAMVSGEMGVHLGGRAGTAGKKLKVLYMARYGADAANNIPKRATIFQGRPYRENTYYARDKDLVQQAI 453          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: A0A6H5JDQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ1_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 2.080e-85
Identity = 142/220 (64.55%), Postives = 165/220 (75.00%), Query Frame = 1
Query:  271 SLRNHVERVCSSLQAQSQHQQVQQMPSNQIEQDETKASLLTKALRTVNIDGSVRIDEDSGIASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIPIADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAF 930
            S+RNHVERVC  L+AQ+QHQ      S+ +   ETK + L KALRTV I GSVRIDE++G  SIID  R+LCPEAS E AA MLTRVLEKE  DG        QS IP+  ++R+ Y++IN  G +TP CDA TL+EIIWLLP+ AAKE RRQSA+TI RVLGGD SLCDEIEQRC  L+S EEGR YQ F++DQGPAKK RSE PFWFEYASDE+K AF
Sbjct:   10 SVRNHVERVCQCLRAQAQHQL-----SDHVAHAETKTARLEKALRTVGIHGSVRIDENTGKGSIIDVNRMLCPEASAEYAAKMLTRVLEKEKRDGMERPGQNAQSTIPL--SERIEYVRINDKGPVTPICDASTLVEIIWLLPSNAAKEFRRQSAQTITRVLGGDTSLCDEIEQRCDRLQSTEEGRAYQGFLLDQGPAKKQRSEEPFWFEYASDEEKRAF 222          
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Match: A0A6H5JC19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC19_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 5.650e-82
Identity = 145/241 (60.17%), Postives = 177/241 (73.44%), Query Frame = 1
Query:  727 QSAETICRVLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFEYASDEQKSAFVSVVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFADRIKDIQRRA---SRAIAAAPVD--NSTISVARPVDDSIDPATGLLIATPKCSESVRGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDTTFRGKPFPENSYWARDADLIQKAIRIVC 1434
            Q A+ + +VLG       ++E    +L ++     YQNFV+DQ PAKK RSE PFWF +AS EQK  +VSV+A KA+ LE++D+ +T K +L+S+  F  RD IEFADRIKDIQ RA   S  +AA P+D  NS ++VARPV+DSIDP TGL IAT  CSESVRGPETSICNEA KMG K+GEKAGQVGK  K LY +R+GV A  NIPKR T FRGKPF EN++W RDAD+IQ+AIRIVC
Sbjct:  129 QRADMLTKVLGRG-----KLEYHRKALMNLP--MAYQNFVLDQSPAKKQRSEAPFWFNFASGEQKRDYVSVMANKAMTLEQMDLCKTLKDELQSVNQFTGRDSIEFADRIKDIQMRALAPSNMLAAVPMDADNSIVAVARPVNDSIDPETGLRIATATCSESVRGPETSICNEAAKMGFKLGEKAGQVGKMAKSLYRKRHGVAAAANIPKRHTIFRGKPFSENTHWQRDADIIQEAIRIVC 362          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QN79_ESV1K6.580e-19360.65EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
D8LPL9_ECTSI2.820e-17255.74EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN80_ESV1K1.390e-16753.89EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K200_9PHAE1.660e-16454.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5N7_9PHAE7.680e-15455.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWM4_9PHYC8.820e-10450.56Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JG13_9PHAE7.880e-9740.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LW93_9PHYC4.000e-9036.33Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JDQ1_9PHAE2.080e-8564.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC19_9PHAE5.650e-8260.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:235659..237098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score508.1
Seed ortholog evalue4.6e-141
Seed eggNOG ortholog2880.D8LPL9
Hectar predicted targeting categoryother localisation
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1440
Cds size1440
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927488.5101593-CDS-C-linearis_contig112:235658..2370981622927488.5101593-CDS-C-linearis_contig112:235658..237098Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 235659..237098 +
1690879729.6603308-CDS-C-linearis_contig112:235658..2370981690879729.6603308-CDS-C-linearis_contig112:235658..237098Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 235659..237098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1524.1prot_C-linearis_contig112.1524.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 235659..237098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1524.1

>prot_C-linearis_contig112.1524.1 ID=prot_C-linearis_contig112.1524.1|Name=mRNA_C-linearis_contig112.1524.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=480bp
MENLIVDASTGHVGVVSMMTTARPALNPKGVLRSVKGILQDYSGPNISKR
QVEGRITSVVPSEVCEYILDNISGQGWDTWRVASGDVFKQSLRNHVERVC
SSLQAQSQHQQVQQMPSNQIEQDETKASLLTKALRTVNIDGSVRIDEDSG
IASIIDAIRLLCPEASPENAAHMLTRVLEKENADGGNNHVPVVQSPIPIP
IADRVSYIKINGHGNITPTCDAKTLIEIIWLLPAQAAKEVRRQSAETICR
VLGGDVSLCDEIEQRCASLKSIEEGRTYQNFVMDQGPAKKHRSEPPFWFE
YASDEQKSAFVSVVAKKAIALEEIDMHETCKQKLESLGHFAPRDKIEFAD
RIKDIQRRASRAIAAAPVDNSTISVARPVDDSIDPATGLLIATPKCSESV
RGPETSICNEAGKMGIKVGEKAGQVGKKVKHLYSERYGVEAGRNIPKRDT
TFRGKPFPENSYWARDADLIQKAIRIVCVP
back to top

mRNA from alignment at C-linearis_contig112:235659..237098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1524.1 ID=mRNA_C-linearis_contig112.1524.1|Name=mRNA_C-linearis_contig112.1524.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1440bp|location=Sequence derived from alignment at C-linearis_contig112:235659..237098+ (Chordaria linearis ClinC8C monoicous)
ATGGAGAACCTTATTGTCGATGCTTCCACTGGCCATGTCGGAGTCGTTTC CATGATGACAACAGCCAGGCCTGCGTTGAACCCAAAAGGAGTTCTGAGAT CGGTGAAGGGGATCCTCCAAGACTACAGCGGGCCAAACATTTCAAAGCGT CAGGTAGAAGGCAGGATCACATCTGTCGTTCCGAGCGAAGTCTGCGAGTA CATTTTGGACAACATTTCAGGCCAAGGTTGGGACACATGGAGAGTCGCTT CGGGAGACGTGTTCAAGCAATCACTGAGAAACCACGTCGAGCGCGTTTGC TCGTCACTACAGGCACAGTCTCAGCATCAACAAGTCCAGCAAATGCCCTC GAATCAAATCGAGCAAGATGAAACCAAAGCTTCGTTGTTGACGAAGGCTT TGAGGACCGTTAACATCGATGGCTCCGTACGCATTGACGAGGACTCGGGT ATAGCGTCTATCATCGATGCCATTCGCCTGCTATGCCCCGAGGCCTCTCC CGAAAATGCTGCGCACATGCTAACACGCGTCCTTGAAAAGGAAAATGCGG ATGGCGGAAACAACCATGTACCCGTGGTACAGAGTCCAATCCCCATCCCC ATCGCCGACCGCGTTAGCTATATCAAGATCAACGGACACGGCAATATCAC CCCCACATGCGACGCTAAAACGCTCATCGAAATCATCTGGCTACTGCCCG CGCAAGCCGCCAAAGAAGTTCGACGTCAGTCGGCCGAGACGATCTGTAGG GTGCTTGGAGGCGATGTGAGCCTGTGCGATGAGATCGAACAGCGCTGTGC CAGTCTCAAGAGCATTGAGGAAGGCAGGACCTACCAAAACTTCGTCATGG ACCAAGGCCCCGCCAAGAAGCATCGGTCGGAGCCACCATTTTGGTTCGAG TACGCATCGGATGAACAGAAAAGTGCTTTCGTCTCGGTCGTGGCCAAGAA AGCCATAGCCTTGGAAGAGATTGACATGCACGAAACCTGCAAACAGAAAC TGGAGTCATTAGGGCACTTCGCCCCGCGCGACAAAATTGAGTTCGCAGAC CGGATCAAAGATATCCAGCGACGGGCGTCCAGAGCCATTGCCGCCGCGCC TGTCGACAATTCAACCATTTCCGTGGCAAGGCCAGTAGACGACTCAATCG ATCCGGCGACAGGTCTACTTATCGCTACTCCAAAGTGTAGCGAGAGTGTT CGAGGTCCGGAGACCTCCATTTGCAACGAAGCTGGAAAAATGGGCATAAA AGTAGGCGAGAAGGCCGGCCAGGTCGGCAAGAAGGTGAAGCACCTGTACT CAGAGCGGTACGGCGTCGAAGCTGGTCGCAACATACCCAAGCGCGACACC ACCTTCCGGGGCAAGCCTTTTCCTGAAAACAGTTACTGGGCACGTGATGC GGATTTGATTCAAAAAGCCATCCGGATCGTGTGTGTCCCG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig112:235659..237098+

>mRNA_C-linearis_contig112.1524.1 ID=mRNA_C-linearis_contig112.1524.1|Name=mRNA_C-linearis_contig112.1524.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2880bp|location=Sequence derived from alignment at C-linearis_contig112:235659..237098+ (Chordaria linearis ClinC8C monoicous)
ATGGAGAACCTTATTGTCGATGCTTCCACTGGCCATGTCGGAGTCGTTTC
CATGATGACAACAGCCAGGCCTGCGTTGAACCCAAAAGGAGTTCTGAGAT
CGGTGAAGGGGATCCTCCAAGACTACAGCGGGCCAAACATTTCAAAGCGT
CAGGTAGAAGGCAGGATCACATCTGTCGTTCCGAGCGAAGTCTGCGAGTA
CATTTTGGACAACATTTCAGGCCAAGGTTGGGACACATGGAGAGTCGCTT
CGGGAGACGTGTTCAAGCAATCACTGAGAAACCACGTCGAGCGCGTTTGC
TCGTCACTACAGGCACAGTCTCAGCATCAACAAGTCCAGCAAATGCCCTC
GAATCAAATCGAGCAAGATGAAACCAAAGCTTCGTTGTTGACGAAGGCTT
TGAGGACCGTTAACATCGATGGCTCCGTACGCATTGACGAGGACTCGGGT
ATAGCGTCTATCATCGATGCCATTCGCCTGCTATGCCCCGAGGCCTCTCC
CGAAAATGCTGCGCACATGCTAACACGCGTCCTTGAAAAGGAAAATGCGG
ATGGCGGAAACAACCATGTACCCGTGGTACAGAGTCCAATCCCCATCCCC
ATCGCCGACCGCGTTAGCTATATCAAGATCAACGGACACGGCAATATCAC
CCCCACATGCGACGCTAAAACGCTCATCGAAATCATCTGGCTACTGCCCG
CGCAAGCCGCCAAAGAAGTTCGACGTCAGTCGGCCGAGACGATCTGTAGG
GTGCTTGGAGGCGATGTGAGCCTGTGCGATGAGATCGAACAGCGCTGTGC
CAGTCTCAAGAGCATTGAGGAAGGCAGGACCTACCAAAACTTCGTCATGG
ACCAAGGCCCCGCCAAGAAGCATCGGTCGGAGCCACCATTTTGGTTCGAG
TACGCATCGGATGAACAGAAAAGTGCTTTCGTCTCGGTCGTGGCCAAGAA
AGCCATAGCCTTGGAAGAGATTGACATGCACGAAACCTGCAAACAGAAAC
TGGAGTCATTAGGGCACTTCGCCCCGCGCGACAAAATTGAGTTCGCAGAC
CGGATCAAAGATATCCAGCGACGGGCGTCCAGAGCCATTGCCGCCGCGCC
TGTCGACAATTCAACCATTTCCGTGGCAAGGCCAGTAGACGACTCAATCG
ATCCGGCGACAGGTCTACTTATCGCTACTCCAAAGTGTAGCGAGAGTGTT
CGAGGTCCGGAGACCTCCATTTGCAACGAAGCTGGAAAAATGGGCATAAA
AGTAGGCGAGAAGGCCGGCCAGGTCGGCAAGAAGGTGAAGCACCTGTACT
CAGAGCGGTACGGCGTCGAAGCTGGTCGCAACATACCCAAGCGCGACACC
ACCTTCCGGGGCAAGCCTTTTCCTGAAAACAGTTACTGGGCACGTGATGC
GGATTTGATTCAAAAAGCCATCCGGATCGTGTGTGTCCCGATGGAGAACC
TTATTGTCGATGCTTCCACTGGCCATGTCGGAGTCGTTTCCATGATGACA
ACAGCCAGGCCTGCGTTGAACCCAAAAGGAGTTCTGAGATCGGTGAAGGG
GATCCTCCAAGACTACAGCGGGCCAAACATTTCAAAGCGTCAGGTAGAAG
GCAGGATCACATCTGTCGTTCCGAGCGAAGTCTGCGAGTACATTTTGGAC
AACATTTCAGGCCAAGGTTGGGACACATGGAGAGTCGCTTCGGGAGACGT
GTTCAAGCAATCACTGAGAAACCACGTCGAGCGCGTTTGCTCGTCACTAC
AGGCACAGTCTCAGCATCAACAAGTCCAGCAAATGCCCTCGAATCAAATC
GAGCAAGATGAAACCAAAGCTTCGTTGTTGACGAAGGCTTTGAGGACCGT
TAACATCGATGGCTCCGTACGCATTGACGAGGACTCGGGTATAGCGTCTA
TCATCGATGCCATTCGCCTGCTATGCCCCGAGGCCTCTCCCGAAAATGCT
GCGCACATGCTAACACGCGTCCTTGAAAAGGAAAATGCGGATGGCGGAAA
CAACCATGTACCCGTGGTACAGAGTCCAATCCCCATCCCCATCGCCGACC
GCGTTAGCTATATCAAGATCAACGGACACGGCAATATCACCCCCACATGC
GACGCTAAAACGCTCATCGAAATCATCTGGCTACTGCCCGCGCAAGCCGC
CAAAGAAGTTCGACGTCAGTCGGCCGAGACGATCTGTAGGGTGCTTGGAG
GCGATGTGAGCCTGTGCGATGAGATCGAACAGCGCTGTGCCAGTCTCAAG
AGCATTGAGGAAGGCAGGACCTACCAAAACTTCGTCATGGACCAAGGCCC
CGCCAAGAAGCATCGGTCGGAGCCACCATTTTGGTTCGAGTACGCATCGG
ATGAACAGAAAAGTGCTTTCGTCTCGGTCGTGGCCAAGAAAGCCATAGCC
TTGGAAGAGATTGACATGCACGAAACCTGCAAACAGAAACTGGAGTCATT
AGGGCACTTCGCCCCGCGCGACAAAATTGAGTTCGCAGACCGGATCAAAG
ATATCCAGCGACGGGCGTCCAGAGCCATTGCCGCCGCGCCTGTCGACAAT
TCAACCATTTCCGTGGCAAGGCCAGTAGACGACTCAATCGATCCGGCGAC
AGGTCTACTTATCGCTACTCCAAAGTGTAGCGAGAGTGTTCGAGGTCCGG
AGACCTCCATTTGCAACGAAGCTGGAAAAATGGGCATAAAAGTAGGCGAG
AAGGCCGGCCAGGTCGGCAAGAAGGTGAAGCACCTGTACTCAGAGCGGTA
CGGCGTCGAAGCTGGTCGCAACATACCCAAGCGCGACACCACCTTCCGGG
GCAAGCCTTTTCCTGAAAACAGTTACTGGGCACGTGATGCGGATTTGATT
CAAAAAGCCATCCGGATCGTGTGTGTCCCG
back to top