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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-04_002120.1 |
| Exons | 3 |
| Model size | 576 |
| Cds size | 345 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927488.4451532-UTR-C-linearis_contig112:233450..233681 | 1622927488.4451532-UTR-C-linearis_contig112:233450..233681 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig112 233451..233681 - |
| 1690879729.6178126-UTR-C-linearis_contig112:233450..233681 | 1690879729.6178126-UTR-C-linearis_contig112:233450..233681 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig112 233451..233681 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927488.4571717-CDS-C-linearis_contig112:233681..233775 | 1622927488.4571717-CDS-C-linearis_contig112:233681..233775 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig112 233682..233775 - |
| 1690879729.626995-CDS-C-linearis_contig112:233681..233775 | 1690879729.626995-CDS-C-linearis_contig112:233681..233775 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig112 233682..233775 - |
| 1622927488.468172-CDS-C-linearis_contig112:234080..234167 | 1622927488.468172-CDS-C-linearis_contig112:234080..234167 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig112 234081..234167 - |
| 1690879729.6351092-CDS-C-linearis_contig112:234080..234167 | 1690879729.6351092-CDS-C-linearis_contig112:234080..234167 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig112 234081..234167 - |
| 1622927488.4782696-CDS-C-linearis_contig112:234287..234451 | 1622927488.4782696-CDS-C-linearis_contig112:234287..234451 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig112 234288..234451 - |
| 1690879729.64622-CDS-C-linearis_contig112:234287..234451 | 1690879729.64622-CDS-C-linearis_contig112:234287..234451 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig112 234288..234451 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1523.1 >prot_C-linearis_contig112.1523.1 ID=prot_C-linearis_contig112.1523.1|Name=mRNA_C-linearis_contig112.1523.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=115bp
VPGGAARWREGGRERDQPPRHDRRRRLSDLSRGFDHLFNKARKKGLIRLR
AGERRERCKEEADEKAIEAAPRLRSIEARRKTSRRWKLRPPSPRSSPSRR
RRTAATVVSRRTSL* back to topmRNA from alignment at C-linearis_contig112:233451..234451- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig112.1523.1 ID=mRNA_C-linearis_contig112.1523.1|Name=mRNA_C-linearis_contig112.1523.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1001bp|location=Sequence derived from alignment at C-linearis_contig112:233451..234451- (Chordaria linearis ClinC8C monoicous)
GTCCCGGGCGGCGCCGCCCGATGGAGGGAGGGAGGGAGAGAGAGAGATCA
GCCACCGAGACACGATCGACGACGCCGCCTTTCAGACTTGTCTCGGGGCT
TTGACCACCTTTTTAACAAGGCGAGGAAAAAAGGGCTCATCAGGCTCAGA
GCCGGAGAGAGAAGGTATGGTTGGAAGTTTGCGGAAGGGGTTATTTTCTT
TTCTTTCCTGTACCACAATCCATAAGTCAAACATCGTGTACTGCCCGACC
CCTTGTTTGTTTTCCAGACTCCGCGGGAAGGGAGGGAGCGATGCAAGGAG
GAAGCTGATGAAAAAGCGATAGAAGCTGCGCCACGTTTGCGATCGATTGA
GGCCAGAAGGAAAACCTCCAGGTGAGACCAGTTGACACCAGATGCGCCCC
CCTCCTATTTTCCACGGCAAGCCACCGCAGGCGAAGTGCCGGGCCGACAA
ATAACTGAGTTTTTTGGCCAGCCGGAGCGCGCCAAAGTAGCATGAACTTG
ACGATCGGCGCCGCCTCTACCGCTTTACCCCGGACTGTTTCGACGGCGAC
CACACACCCCGAACCGCACCATCGCTAGCCAACCGTTGCTGTACCATCCT
CTGTTTCGGCGGCGATCAATGGTCCGGATTGGCTCTACTGAAACAAACTT
AGCCTTGCTCGCTGGAATTTGAACAGGCGCTGGAAGCTACGCCCGCCGTC
GCCCAGATCGTCACCGTCGAGGAGAAGACGGACGGCTGCGACCGTTGTAT
CCAGACGCACCTCGCTGTAGTGTTGTTCAGCGCGAATCGGTAGTCAAGAA
GGCCTTTGGTTCTTAGAACCGCATCTCCGCGGGGAAAGAGGGTGTATAAC
CAAGGGCGGTGGCCAGGAGGTCGCGGGAGAGCGACAATCGTGACACTGGA
AGCGATTTGGTTTTGGTCGAGACTCTAGGCTGTTATATTTGGCGATAGTT
CTGCCCATCACCGGTGGTTTGGCATCTTGGTAGTTCGGGGACATTGGGGG
C back to topCoding sequence (CDS) from alignment at C-linearis_contig112:233451..234451- >mRNA_C-linearis_contig112.1523.1 ID=mRNA_C-linearis_contig112.1523.1|Name=mRNA_C-linearis_contig112.1523.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at C-linearis_contig112:233451..234451- (Chordaria linearis ClinC8C monoicous)
GTCCCGGGCGGCGCCGCCCGATGGAGGGAGGGAGGGAGAGAGAGAGATCA
GCCACCGAGACACGATCGACGACGCCGCCTTTCAGACTTGTCTCGGGGCT
TTGACCACCTTTTTAACAAGGCGAGGAAAAAAGGGCTCATCAGGCTCAGA
GCCGGAGAGAGAAGGTCCCGGGCGGCGCCGCCCGATGGAGGGAGGGAGGG
AGAGAGAGAGATCAGCCACCGAGACACGATCGACGACGCCGCCTTTCAGA
CTTGTCTCGGGGCTTTGACCACCTTTTTAACAAGGCGAGGAAAAAAGGGC
TCATCAGGCTCAGAGCCGGAGAGAGAAGGGAGCGATGCAAGGAGGAAGCT
GATGAAAAAGCGATAGAAGCTGCGCCACGTTTGCGATCGATTGAGGCCAG
AAGGAAAACCTCCAGGGAGCGATGCAAGGAGGAAGCTGATGAAAAAGCGA
TAGAAGCTGCGCCACGTTTGCGATCGATTGAGGCCAGAAGGAAAACCTCC
AGGCGCTGGAAGCTACGCCCGCCGTCGCCCAGATCGTCACCGTCGAGGAG
AAGACGGACGGCTGCGACCGTTGTATCCAGACGCACCTCGCTGTAGGCGC
TGGAAGCTACGCCCGCCGTCGCCCAGATCGTCACCGTCGAGGAGAAGACG
GACGGCTGCGACCGTTGTATCCAGACGCACCTCGCTGTAG back to top
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