mRNA_C-linearis_contig112.1522.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig112.1522.1
Unique Name	mRNA_C-linearis_contig112.1522.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: D7FRH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH6_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 2.640e-148
Identity = 215/325 (66.15%), Postives = 260/325 (80.00%), Query Frame = 2

Query:   53 LKLEFLSPKTVSDSQIDEVTHVISKAFQGFSASVGASEEITAEDFGDEEAGRAVIKGICQSYDGYAAVVDN---KIVGVSFVDVHATGSRAANLGPVASLAPGAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTCQYVGGFLAS-TEDDESPGSSGGGALALTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFKEASRQHEQGGIPCPRFHCPVEFTGLLSWLLSQQGIKVFRATTIMARGPYEHTPWSSDAGCVVAPSIAGY 1015
            L+L FL PKT+ DSQ+DEVTHV+S+AFQ F+ S+GA  E+  E+FG  E G  +I+ IC+S++ YA V D    KIVGVSFVDVHA GSR A LGPV+S+APGAGK +FVAAC +AE+LGFSTL+LMQ+AANSRSFSLYAKL FE KHTCQY+GGFL   +E   SP  +  G + L AMVAGDV ECA +FL AHG+ CGWDRRADI  CLESG PFPMLVAR  DGKVVGY+TGF++ GHTVA SQD+FC +F+E+S+ H+Q G+PCPRFHCPVEFTGLLSW L+Q+G+++FRAT +MARG YEHTPW    G VVAPS +G+
Sbjct:    4 LELAFLDPKTIKDSQMDEVTHVVSRAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYAVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQIAANSRSFSLYAKLGFETKHTCQYMGGFLEPPSEGSLSPPPAPSG-VTLKAMVAGDVEECAEMFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLRIFRATIVMARGHYEHTPWQDAIGNVVAPSASGH 327

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: D7FVW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW9_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 6.530e-144
Identity = 210/323 (65.02%), Postives = 251/323 (77.71%), Query Frame = 2

Query:   56 KLEFLSPKTVSDSQIDEVTHVISKAFQGFSASVGASEEITAEDFGDEEAGRAVIKGICQSYDGYAAVVDN---KIVGVSFVDVHATGSRAANLGPVASLAPGAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTCQYVGGFLASTEDDESPGSSGGGALALTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFKEASRQHEQGGIPCPRFHCPVEFTGLLSWLLSQQGIKVFRATTIMARGPYEHTPWSSDAGCVVAPSIAGY 1015
            +L F+ PK+++DSQ+DEVT V+SKAFQ F+ S+    E+  E+FG    G  VI+ IC+SY+GYA V D    KIVGVSFVDVHA GS+ A LGPVASLA GAGK +FVAAC++AE+LGFSTL+L Q+AANSRSFSLYAKL FE KHT QY+GGFL    +   P       + L AMVAGDV ECA LFL AHG+DCGWDRRADI  CL SG PFPMLVAR  +GKVVGYSTGFF+ GHTVA SQD+FC +F+E S+ H+Q G+PCP+F+CPVEFTGLLSW L+Q+G+KVFRA+ IMARG YEHTPW + AG +VAPS  GY
Sbjct:    5 ELVFIDPKSINDSQVDEVTQVVSKAFQDFNTSINTPVEVYEEEFGHPAIGPTVIQSICKSYEGYAVVEDGGAGKIVGVSFVDVHAKGSKVATLGPVASLASGAGKKSFVAACDYAEELGFSTLILTQIAANSRSFSLYAKLGFETKHTVQYIGGFLEQPSEGSLPLPPAPSGVTLKAMVAGDVEECAELFLEAHGKDCGWDRRADITGCLGSGFPFPMLVARDANGKVVGYSTGFFMIGHTVAKSQDIFCYMFREGSKLHKQAGLPCPKFYCPVEFTGLLSWCLAQKGLKVFRASLIMARGHYEHTPWPNAAGHIVAPSTTGY 327

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: D7FRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH7_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.310e-45
Identity = 87/130 (66.92%), Postives = 105/130 (80.77%), Query Frame = 2

Query:   98 IDEVTHVISKAFQGFSASVGASEEITAEDFGDEEAGRAVIKGICQSYDGYAAVVDN---KIVGVSFVDVHATGSRAANLGPVASLAPGAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFE 478
            +DEVTHV+SKAFQ F+ S+GA  E+  E+FG  E G  +I+ IC+S++ YA V D    KIVGVSFVDVHA GSR A LGPV+S+APGAGK +FVAAC +AE+LGFSTL+LMQ+AANSRSFSLYAKL FE
Sbjct:    1 MDEVTHVVSKAFQDFNTSMGAPVEVYEEEFGHPETGPGIIQSICKSHEAYAVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQIAANSRSFSLYAKLGFE 130

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: A0A6H5KFB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB4_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 9.870e-40
Identity = 119/334 (35.63%), Postives = 141/334 (42.22%), Query Frame = 2

Query:   86 SDSQIDEVTHVISKAFQGFSASVGASEEITAEDFGDEEAGRAVIKGI--------------------CQSYDGYAAVVDN----KIVGVSFVDVHATGSRAANLGPVASLAPGAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTCQYVGGFLASTEDDESPGSSGGGALALTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFKEASRQHEQGGIPCPRFHCPVEFTGLLSWLLSQQGIKVFRATTIMARGPYEHTPWSSDAGCVVAPSIAGY 1015
            +DSQ+DEVT V+SKA Q F+ SV A  E+  EDFG    G  VI+                        ++   +A V++    KIVGVSFVDVHA GSR A LGPVASLA GAGKN+FVAAC +AE+LGFSTL     A   RS                                                                                          DGKVVGYSTG                                  RF+CPVEFTGLLSW L+Q+G+KVFRA+ IMARG +EHTPW +  G +VAPS  GY
Sbjct:    3 NDSQVDEVTQVVSKACQDFNTSVNAPVEVYEEDFGHPAIGPTVIQRAGAFRPPCIRRKLGKIFISSNAPTHPSSSAPVEDGGAGKIVGVSFVDVHAKGSRVATLGPVASLASGAGKNSFVAACAYAEELGFSTL-----AGGPRS------------------------------------------------------------------------------------------DGKVVGYSTGTI--------------------------------RFYCPVEFTGLLSWCLAQKGLKVFRASLIMARGHFEHTPWPNATGHIVAPSTTGY 209

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: A0A6H5K2U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.440e-33
Identity = 53/85 (62.35%), Postives = 69/85 (81.18%), Query Frame = 2

Query:  761 GHTVATSQDVFCAIFKEASRQHEQGGIPCPRFHCPVEFTGLLSWLLSQQGIKVFRATTIMARGPYEHTPWSSDAGCVVAPSIAGY 1015
            GHTVA S D+ C +F+E+S+ H+Q G+PCPRFHC VEFTGLLSW L+Q+G+K+FRAT +MARG YEHTPW    G ++AP+ +GY
Sbjct:    2 GHTVAKSHDIICDMFRESSKLHQQAGLPCPRFHCRVEFTGLLSWALAQRGLKIFRATILMARGHYEHTPWQDTIGHLMAPTASGY 86

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: A9SW47_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SW47_PHYPA)

HSP 1 Score: 84.0 bits (206), Expect = 4.020e-14
Identity = 71/225 (31.56%), Postives = 105/225 (46.67%), Query Frame = 2

Query:  350 GAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTCQYVGGFLASTEDDESPGSSGGGALA---LTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFKEASRQHEQGGIPCPRFHCPVE-FTGLLSWLLSQQGIKVFRATTIMARGPYEHTPWSSDAGCVVAPSIAG 1012
            GAGK   VA  E        ++ L QVAAN  SF LYA L F        + G + + E   +  S G   +    +  M   DV  C  L    H +  G+DR   I+  + +G  +  +  RAG+  ++ Y+TGF +SGHTVA S++V   +F E   + E   +P    H P   +  LL W ++ + +K+ R+  +M  G Y     S  +G V  PSI G
Sbjct:  109 GAGKAVMVALIEKVRSENAKSIRLCQVAANPISFGLYASLGFVPVECWMDLEGNVTTEEASSANRSCGFSPVTGVDVRRMEEADVKCCNEL----HKKTMGFDREQRIRMDIPNGAAW--VAVRAGE--IIAYTTGFILSGHTVAESEEVLAFMFTEVCHKTENASVP-KNLHVPGRLYPRLLQWAIAAK-LKMMRSCWLMVIGSY----LSPQSGMVYCPSIEG 319

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: A9P0X9_PICSI (N-acetyltransferase domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P0X9_PICSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.590e-13
Identity = 72/240 (30.00%), Postives = 117/240 (48.75%), Query Frame = 2

Query:  116 VISKAFQGFSASVGASEEITAEDFGDEEAGRAVIKGICQSYDGYAAVV-DNKI---VGVSFVDVHATGSRAANLGPVASLAP-----GAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTCQYVGGFLASTEDDESPGSSGGGALALTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFK 808
            ++ +AF  F+ SVG    +   D+G+ E  + V+  + QS   Y     DN     +G +F++   TG     +GPV  + P     GAGK    A  E A+    +++ L+Q+AAN++SFSLYAKL F+      Y   F  S +++   G+S      +  M   DV  C+ L    H    G +R  DI+  L++      +  +  D  +  Y+TGF + GH++A S+D F  +F+
Sbjct:   23 ILHRAFSQFNLSVGIPPHV---DYGNVEIAKKVLHEMLQSPSSYGITAFDNASGLPIGAAFLNF--TGESVQAVGPV-FVDPDWNNKGAGKALMNALIERAKATNATSIRLVQIAANTQSFSLYAKLGFQPVECISY---FEGSMDENLHSGASFIPGFKVKMMEESDVHACSEL----HKSVLGHERETDIRELLQTNPGNSWVAVK--DDILQAYTTGFCLEGHSIAISEDAFKTLFE 247

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: R1DNJ0_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNJ0_EMIHU)

HSP 1 Score: 70.9 bits (172), Expect = 1.130e-9
Identity = 80/279 (28.67%), Postives = 114/279 (40.86%), Query Frame = 2

Query:   98 IDEVTHVISKAFQGFSASVGASEEITAEDFGDEEAGRAVIKGICQS------YDGYAAV-VDNKIVGVSFVDVHATGSRAANLGPVASLAPGAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTC-QYVGGFLASTEDDESPGSSGGGALALTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFKE-----ASRQHEQGGIPCPRFHCPVEFTGLLSWL 895
            +DE   +   AF  F+ SVG + E    +  D      V K +  S      +D + AV  +  +VG + ++           GP+AS  PGAGK                  LLMQ    +      A+     + TC +YVG    + E   +P         +  + A DV EC+ L    H + C   R  DI   +  G P P  VAR   GKVVGY+TG ++SGHTVA S++   A+        A+ Q     IP P    P + +    WL
Sbjct:    6 LDEAASIAFSAFNAFNESVGLAPEFPPREVVD------VPKYLYSSGLERPGFDVFVAVDEEGTVVGANMLEYQDGIGGIGXXGPIASKRPGAGK------------------LLMQAVMKAA-----AEHPACPRRTCIEYVGSGCCTAE---APAG-----FVVKPLAASDVEECSAL----HEQVCASRRMGDIGSAV--GGPHPNAVARDEAGKVVGYTTGSYLSGHTVALSEEALQALVVAQSAAIAAAQAAGAPIPPPTLFVPHQHSAFARWL 241

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: UPI0003694FED (GNAT family N-acetyltransferase n=1 Tax=Smaragdicoccus niigatensis TaxID=359359 RepID=UPI0003694FED)

HSP 1 Score: 64.7 bits (156), Expect = 7.660e-8
Identity = 74/298 (24.83%), Postives = 117/298 (39.26%), Query Frame = 2

Query:   77 KTVSDSQIDEVTHVISKAFQGFSASVGASEEITAEDFGDEEAGRAVIKGICQSYDGYAAVV---DNKIVGVSFVDVHAT--GSRAANLGPVASLAPGAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTCQYVGGFLASTEDDESPGSSGGGALALTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFKEASRQHEQGGIPCPRFHCPVEFTGLLSWLLSQQGIKVFRATTIMARGPY 955
            +T + +   +   ++  AF+  + + G   E    +F D     A+      + DG  A+V   D+ I+G +F D      G     + PVA  A G G+       +       + + L+Q A N RSFSLYAKL FEV+       G +  + +         G          D+ EC  L    HG    +DR  ++      G    M       G++ GY+TG     H V  S     A+ + A      G      F  P   T L+ W L+  G+++ + +T+M  G Y
Sbjct:    8 RTATPNDAAQCARIMFDAFENIATTHGFPIEPQTREFCDFHMASAL------ATDGTFALVAVRDDDIIGSAFADERGAVVGIGPVTVDPVAQDAGGVGRLLMQGLLDRERDRQAAGVRLVQTAYNYRSFSLYAKLGFEVREPLSVFNGTVPRSANPSQTVRPATGV---------DLNECNALCRRVHG----YDRSDELAAWTGLG----MAQVVESSGRITGYATGLGYGWHAVGESNADIIALLQSAEMYLGLG------FLVPSRNTELMQWCLNS-GLRIVQQSTLMTIGDY 275

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BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Match: A0A1A2PET0_9MYCO (Acetyltransferase n=3 Tax=Mycobacterium TaxID=1763 RepID=A0A1A2PET0_9MYCO)

HSP 1 Score: 63.2 bits (152), Expect = 2.710e-7
Identity = 66/237 (27.85%), Postives = 106/237 (44.73%), Query Frame = 2

Query:  260 DNKIVGVSFVDVHATGSRAANLGPVASLAP-----GAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSFEVKHTCQYVGGFLASTEDDESPGSSGGGALALTAMVAGDVAECANLFLAAHGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVATSQDVFCAIFKEASRQHEQGGIPCPRFHCPVEFTGLLSWLLSQQGIKVFRATTIMARGPY 955
            D  +VG +F+D  A+     ++GPV ++ P     G G     A  + + +     + L+QVA N+RS SLYA+L F+V+     + G   +      PG        +      DV  C  L +  HG D    R  ++Q  ++ G     +V +   G++  YSTG   +G++VA + +   A+   A+  H  G    P F  P+  T LL W L   G++V     +M  G Y
Sbjct:   77 DGTVVGSNFLDQRAS---IFSVGPV-TVEPDVQDHGIGGALMAAVLDESARRQARGVRLVQVAYNTRSLSLYARLGFDVREPLAVLQGPAIARA---RPGFD------IRPATREDVPACDALCVGVHGHD----RSGELQEAVDRGAA--SVVTQ--HGRITAYSTGIGFTGYSVAETDEALTALI--AAAPHFAG----PGFLMPLRNTALLRWCLGH-GLRVVYVANLMTVGYY 285

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot

BLAST of mRNA_C-linearis_contig112.1522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
D7FRH6_ECTSI	2.640e-148	66.15	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D7FVW9_ECTSI	6.530e-144	65.02	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FRH7_ECTSI	1.310e-45	66.92	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KFB4_9PHAE	9.870e-40	35.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2U2_9PHAE	7.440e-33	62.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A9SW47_PHYPA	4.020e-14	31.56	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
A9P0X9_PICSI	1.590e-13	30.00	N-acetyltransferase domain-containing protein n=1 ...	[more]
R1DNJ0_EMIHU	1.130e-9	28.67	Uncharacterized protein (Fragment) n=1 Tax=Emilian...	[more]
UPI0003694FED	7.660e-8	24.83	GNAT family N-acetyltransferase n=1 Tax=Smaragdico...	[more]
A0A1A2PET0_9MYCO	2.710e-7	27.85	Acetyltransferase n=3 Tax=Mycobacterium TaxID=1763...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig112	contig	C-linearis_contig112:223045..228280 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	440.3
Seed ortholog evalue	8.1e-121
Seed eggNOG ortholog	2880.D7FRH6
Hectar predicted targeting category	other localisation
EggNOG OGs	2EA42@1,2SGDE@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	8
Model size	1512
Cds size	993
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig112.1522.1	prot_C-linearis_contig112.1522.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig112 223539..228255 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927488.2706022-UTR-C-linearis_contig112:223044..223538	1622927488.2706022-UTR-C-linearis_contig112:223044..223538	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig112 223045..223538 -
1690879729.5239809-UTR-C-linearis_contig112:223044..223538	1690879729.5239809-UTR-C-linearis_contig112:223044..223538	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig112 223045..223538 -
1622927488.408291-UTR-C-linearis_contig112:228255..228280	1622927488.408291-UTR-C-linearis_contig112:228255..228280	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig112 228256..228280 -
1690879729.6093276-UTR-C-linearis_contig112:228255..228280	1690879729.6093276-UTR-C-linearis_contig112:228255..228280	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig112 228256..228280 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig112:223045..228280-
coding sequence from alignment at C-linearis_contig112:223045..228280-

protein sequence of mRNA_C-linearis_contig112.1522.1

>prot_C-linearis_contig112.1522.1 ID=prot_C-linearis_contig112.1522.1|Name=mRNA_C-linearis_contig112.1522.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=331bp
MSSFLPTMDLKLEFLSPKTVSDSQIDEVTHVISKAFQGFSASVGASEEIT
AEDFGDEEAGRAVIKGICQSYDGYAAVVDNKIVGVSFVDVHATGSRAANL
GPVASLAPGAGKNTFVAACEHAEKLGFSTLLLMQVAANSRSFSLYAKLSF
EVKHTCQYVGGFLASTEDDESPGSSGGGALALTAMVAGDVAECANLFLAA
HGRDCGWDRRADIQHCLESGQPFPMLVARAGDGKVVGYSTGFFVSGHTVA
TSQDVFCAIFKEASRQHEQGGIPCPRFHCPVEFTGLLSWLLSQQGIKVFR
ATTIMARGPYEHTPWSSDAGCVVAPSIAGY*

mRNA from alignment at C-linearis_contig112:223045..228280-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig112.1522.1 ID=mRNA_C-linearis_contig112.1522.1|Name=mRNA_C-linearis_contig112.1522.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5236bp|location=Sequence derived from alignment at C-linearis_contig112:223045..228280- (Chordaria linearis ClinC8C monoicous)
CTCGCAGCCTTACTACTCGACCTGCATGTCCTCGTTTCTGCCTACAATGG
ATCTGAAGCTTGAGTTCCTCAGTCCCAAGACGGTCTCGGTGAGAGTTTGA
GATTCCCTCCTATCGTCTGTGCACAGCACATGTGTATGCAAATGCAGCAC
ACAAGCCCTCGCCCGGTGTGTCTCTAGGTTAGGGGACAAAAGCCCGTCGT
CCCGCAAATTGACCTGTGCGTTCGACAAGACGCTTTTATTGGTCACAGAG
GGAAGAAGGAATTGTGCGTGCTGACGCTACTCTGTGAGCGATGGGGAACA
GGTTGGCATCATCTCCCTGAAGTGGCTACAGCAGTCCCGTGGTCGGTGGA
AAATTGGTTCCAAAAAATGTCACAACTGCTGCACTTGCTACCCGTCAAAG
ACCACGCCCTGTCGGTTGTTGCTACAGGACTCCCAGATCGATGAGGTGAC
TCATGTCATATCCAAGGCATTCCAGGGCTTCAGCGCTTCCGTGGGGGCCA
GCGAGGAGATCACCGCAGAGGATTTTGGAGACGAGGAGGCGGGACGAGCC
GTCATCAAAGGGTGGGTGCCTTCATGGATGCAGTTTACCCTACTGTTTGT
ATTCCGAGAGGACCCCGCGCCGGGACTGTTTCAAAAAGGCACAAAAAGGA
GACTTGTGCAATTTCCTGTTTGAATAACAATCGGGAAATCTAAGAAAGAA
CCTCCACTGCAGGACCGAGGTCGGATGCGGTGGATAAACTGTTCAATACA
GAGATTTATTGTGTTTGTTTTTCAATTCCGCAAGAGAAGGTTCGGGGGTT
TAACATTATTTGGTCTGCCCATGGGCACTAATTGGCACCCATTGGCACCC
ATAGGGTATCATGGCGAAGGCCATGAGTATGGCTAGGGGTACCCATGGGT
GAAAATCTCATGGGCAAGGCCCATGAGAATTTCTCTAGAAATCCCATGGG
CATGACCCATGGGGTTTGTTCGAAGAATTCATCGTGAGAACCCATGGGCA
CCCACGAGCACCCAAGAATAATTTTTAACTTTCTCTGTGCGGGCAAGGAC
ATGGGTGCCCATGGGCGCCTATGCGCACCCACAGGGATGTTTGGAAGCAT
CCCTACCATCCGTGGGCACCCGTGGGCACTAACCGTAACCCCAACCCTAA
CCCTGACCCAAACCCATAACCCCAACCCTAAATTTAGGGGTCCCACGGGT
CTTGCCCATGGGATTCATTGGACCCATGGGCAAGGACATGAGTGCCCATG
GGAGCCCATGGGCAAGGACATGGGTGTCCCATGGGAGCCAATGGGAGCCC
ACAGGAGCCCATGGGAGCACATGGGAGCCGGACCCAACAATGTAACTCTT
TGGAAGGCCAGCACCATGCTGACCACGTCTCACAAGCATGTCGATGACCG
GCGACAGGCTGGGGGCGTCGGTCAGGACCAAAGAAACGTTCCTGGGCCAG
TCGACCGCCACAGCTATTTCTCGCTTGACGTACTTATGATGCCGCAGCAC
TCAGCACGACTCAAATTCAGTACAATATGAAATGATAATTTTTCATCAAT
TTTTTGGTGTTGAAGAGCTTTACCGATATCTGTACGTCTGTACTTCTCTC
AGGGGCCCCGCTGTTACTACAGTATAGTAATGACCAACGGCAACAAGCCG
ATCGATTAAGACGAAGTCCATTGCGTCGGCAACAGAGGTGTAGGTTACTG
CTGAGTGCTTGTGTGGCAGTTGTGGGCTGGCTGTTGTTGTCGCTTGGTGC
GTCAAAGACGGGCGTGCGTCACTTCGTCTAGATCTGTTGCGTATGTACTT
GAGAGAAGACAAATTCAAAGACTCACGTCGAAAACACAAGAGCCCAGCAG
CAGCGGCGGTGGCAGGCTACGAACGTATGGTTAGGAGCTCTACTTGTGTT
ACACGACACCTCCGTGCATGACCATATACCGTTGTTCAAACTATCTCCCC
GATGTGCCGACTTCTCCATAATATTTCCCCATTATGCCAACTTCTTTTTG
ATATGCCTACTGGTCTGAGGAATCCTGCGTATGACGCTTGAGTGCTCGTT
CGATCTATGTCGAAACCAGTCAACTGCCAGATCGGTTGTCAGCACCCATG
GATCGGTTGTGTGTGTTGACAACCGATCTGGGAGAGTTTCGACAAGGGTG
ATGCTGGCCAGCATCACGACTTGGCAGCCGGTCAACTTCTGACCCCGCCT
TTCCCGCCGCCCCGCCTCCCCTCCAGGATCTGCCAGTCATATGATGGGTA
CGCGGCGGTAGTGGACAACAAGATCGTGGGCGTGTCTTTTGTCGACGTGC
ATGCCACGGGCTCGAGAGCTGCTAACCTGGGGCCCGTTGCTTCGTTAGCT
CCCGGTGCAGGAAAGAACACCTTCGTGGCCGCGTGCGAACACGCCGAGAA
GCTAGGCTTTTCTACGCTGGTGAGAGCACACCCTAACGAGAGCGGGAGAG
ATTGCTCGTATATTTTTTAGGATCTTCCTTGCGCACCCCGTTAGGCAATG
ACAAGGTCGTCCCATTTTCCTCGGTACCCTTGTTGCCACTCCCTTCTAAT
CTCTCAGGCGCCTTCTTGATCGAATCCCTAGCAGCCCCACCGTCCGTTGT
TCGGTTTAGCACCGCCTAGCGAAAAATTACTCGGAAAACCCATGGGCGTG
GCTTGGCCGGTGCACCCGTCCTTTCCGGAGTGTTGCTGATGCGCCCCTCT
CCCCCGCCCCGCCCACTCTCGTGTGCGTGCTTGCCCAACCTCCTTCGATA
TCTCTGCTGTGGTTCCTCCGACGGACTGGTCGCAGCTGCTCATGCAAGTC
GCGGCCAACTCGCGCTCGTTTTCTCTCTACGCCAAGCTCAGTTTCGAGGT
AAGCACACCATTCATGACGTGTTTGTTGCCGGGCAAGGCAGGAAATGGGT
ATTTCGCTGTCCGGTGCTGGTACGATGACACACGGTTGCTGGCCCTGTCC
TACCATCTCCTCATTCCTCCACCAACAGCAGTTCTGCCAGGGCTGCAGAC
TGGAAACTGCGACTGCAGTAGAGTCGGAGGCGGGAGGTATGCCGTTCGTT
TCACATTTTCGCTTGTTTCATGCCGCGGGGGCTGGCTGCATTGAGCATTG
GACCAGTTCTCTTTCTCCAGGCGATGTCCACTCCCGCCGCCGACGTTCCC
CAATCGCCCCAGCCAACATCGCGTGCGGCTGAGTTGGGTACCCCCCCCCT
CCCGTATTCTGACGTACTGTGCCGGAAAACAGCTGGTAAACTGGAGAAGT
GCGTGTTGTCGCATGCGCCCGAACGCGCTCAGCACCCCGTTCCCACCCTC
CGTTTCCTCGTAGGTGAAACATACATGCCAGTATGTAGGCGGATTCCTGG
CCTCAACGGAGGACGACGAAAGCCCCGGGTCCAGCGGCGGCGGCGCGCTA
GCCTTGACGGCCATGGTCGCGGGAGATGTCGCGGAATGCGCGAATCTATT
CCTCGCCGCGCACGGGAGAGACTGCGGCTGGGATCGCCGGGCCGACATCC
AGCATTGTTTGGAGTCCGGCCAACCATTTCCGATGTGAGGTTTCGAGAGG
TTTTCTTGCTGCGCCGGGGACGCGCACGCTTGTAGCGTACAGAGAAGGCG
CGGCAAAACCCAACCAGACCACGTAAAAAGGGTCGTCATTGAACGCGGTC
AAATCAGCGTAGAGGGCGTGGTTGATGCTCTATGAGTGCCCTTGCCTCGT
CCTGCTCCTCCAACCTCCCCCCCGCCGGTCTTGAAATGTGGGCCGAAAAT
CGAAACAGGCTGGTGGCGCGAGCTGGAGACGGCAAGGTGGTTGGCTACAG
CACAGGTGGGTCGGGGTTTTCTCACTTGTGATGGAAGGGATCGAGCGAAG
TGCTCGACGGTGGTGATGCCTTGTTGGGACGAAACGGCCGGTGCGTGCAT
TGTCACGGTATTGTACACAGTTGTGCTGGTCTTCGTCGGCCTTTTGGCAC
CTCGTTTGAGACGGGGCAGCGTTCCTACTCCTGAAGGGACTATTAGCGTT
GACCAATCGAAAATAGGTTCCCTTTCGAGACGAGTACGGTTTCTACTCTC
GGTCTCTTAGGCCTCTCCCGCGCTCAGGCCGTGCGTGATGCACACAACCT
GTTGCTTTTCGGACGACCTGTTGGGCTGGCGGTACATAGCCGCCATCCAC
CCTCTTCAACGTAGAGCAGCCTAGCGATTGGTTTAGCGGTGGAAGACACC
GCAGGTACAATCTTTTTGTTGACGTCAAGATCGAGATTCGTCACCCCTCA
TTTTTTTCGATCACGCTCGTCTCTGAATATCCACTTTCATTTTCGTGTGC
GTGCAAACCTCTTGCTCAGGTTTCTTCGTTTCAGGGCACACCGTGGCCAC
GTCCCAAGACGTATTTTGCGCCATATTCAAAGAGGCTTCGCGGCAGCACG
AGCAGGGTGGAATACCGTGCCCCAGGTGTCTATTCCTGAAATATTCACTC
ACAGTAGTAGGGTAGGCTTCGTCTTGCAACCGCGAACTGAGACCTTATCA
CCCCGCGCTTACTCACGGCGACCTCCGTTCCATGCTGTTGTTTTGAATTC
ACGAAAAACCTTTTCCGGTGTTCCAGGTTCCACTGTCCCGTCGAGTTCAC
CGGGCTGCTCTCGTGGTTGCTGTCACAGCAAGGCATAAAGGTCTTCCGTG
CGACGACCATCATGGCCAGGGGACCCTATGAACACACCCCGTGGTCGAGC
GATGCTGGTTGCGTTGTGGCTCCGAGTATCGCCGGTTATTGATTGAATGC
ATGTACGCAGCTCTTGTGTTGGCGAGCCGGAGTAGGCCGGAGGTGCCGCT
TACGGCATATGGTGTGGTAGTCGTCGTCGTTTGATGCGTAGTATCCAACT
TGCATCGGTGACACGATCGTCTGTCCACCCTGCGTTCGTGTGTGTGTGGT
GTGCGTGTTTTCTTTCTTAGCACCTATTGCGATAACCAGCGGGCCAATGA
AATGAAGTCAACCGCCGCGGGTCTAAAAGCATAACGCTTTCTGATCAGGA
CTCGTTTTAGGAGGCAGCGAAGGAGACCATGTGTTTTTGTGTACCCCGCC
CCCCCTCATTTTCCATCGGCCATGCTAACCAGCTGACCAATGAAAAGGCC
CCAGTCGTTGCGTTGCGGGTAGAAAAACGCCCAGAACGCCCTCTAACCAG
GATTTCCTGAGAGATCCGTCAAGGAGACTCTTCTCAAGGGTACCCCTTCT
ATGCCTGCGTATTGTTTCTAACATGGCATCGACCAG

Coding sequence (CDS) from alignment at C-linearis_contig112:223045..228280-

>mRNA_C-linearis_contig112.1522.1 ID=mRNA_C-linearis_contig112.1522.1|Name=mRNA_C-linearis_contig112.1522.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at C-linearis_contig112:223045..228280- (Chordaria linearis ClinC8C monoicous)
ATGTCCTCGTTTCTGCCTACAATGGATCTGAAGCTTGAGTTCCTCAGTCC
CAAGACGGTCTCGATGTCCTCGTTTCTGCCTACAATGGATCTGAAGCTTG
AGTTCCTCAGTCCCAAGACGGTCTCGGACTCCCAGATCGATGAGGTGACT
CATGTCATATCCAAGGCATTCCAGGGCTTCAGCGCTTCCGTGGGGGCCAG
CGAGGAGATCACCGCAGAGGATTTTGGAGACGAGGAGGCGGGACGAGCCG
TCATCAAAGGGACTCCCAGATCGATGAGGTGACTCATGTCATATCCAAGG
CATTCCAGGGCTTCAGCGCTTCCGTGGGGGCCAGCGAGGAGATCACCGCA
GAGGATTTTGGAGACGAGGAGGCGGGACGAGCCGTCATCAAAGGGATCTG
CCAGTCATATGATGGGTACGCGGCGGTAGTGGACAACAAGATCGTGGGCG
TGTCTTTTGTCGACGTGCATGCCACGGGCTCGAGAGCTGCTAACCTGGGG
CCCGTTGCTTCGTTAGCTCCCGGTGCAGGAAAGAACACCTTCGTGGCCGC
GTGCGAACACGCCGAGAAGCTAGGCTTTTCTACGCTGGATCTGCCAGTCA
TATGATGGGTACGCGGCGGTAGTGGACAACAAGATCGTGGGCGTGTCTTT
TGTCGACGTGCATGCCACGGGCTCGAGAGCTGCTAACCTGGGGCCCGTTG
CTTCGTTAGCTCCCGGTGCAGGAAAGAACACCTTCGTGGCCGCGTGCGAA
CACGCCGAGAAGCTAGGCTTTTCTACGCTGCTGCTCATGCAAGTCGCGGC
CAACTCGCGCTCGTTTTCTCTCTACGCCAAGCTCAGTTTCGAGCTGCTCA
TGCAAGTCGCGGCCAACTCGCGCTCGTTTTCTCTCTACGCCAAGCTCAGT
TTCGAGGTGAAACATACATGCCAGTATGTAGGCGGATTCCTGGCCTCAAC
GGAGGACGACGAAAGCCCCGGGTCCAGCGGCGGCGGCGCGCTAGCCTTGA
CGGCCATGGTCGCGGGAGATGTCGCGGAATGCGCGAATCTATTCCTCGCC
GCGCACGGGAGAGACTGCGGCTGGGATCGCCGGGCCGACATCCAGCATTG
TTTGGAGTCCGGCCAACCATTTCCGATGTGAAACATACATGCCAGTATGT
AGGCGGATTCCTGGCCTCAACGGAGGACGACGAAAGCCCCGGGTCCAGCG
GCGGCGGCGCGCTAGCCTTGACGGCCATGGTCGCGGGAGATGTCGCGGAA
TGCGCGAATCTATTCCTCGCCGCGCACGGGAGAGACTGCGGCTGGGATCG
CCGGGCCGACATCCAGCATTGTTTGGAGTCCGGCCAACCATTTCCGATGC
TGGTGGCGCGAGCTGGAGACGGCAAGGTGGTTGGCTACAGCACAGGCTGG
TGGCGCGAGCTGGAGACGGCAAGGTGGTTGGCTACAGCACAGGTTTCTTC
GTTTCAGGGCACACCGTGGCCACGTCCCAAGACGTATTTTGCGCCATATT
CAAAGAGGCTTCGCGGCAGCACGAGCAGGGTGGAATACCGTGCCCCAGGT
TTCTTCGTTTCAGGGCACACCGTGGCCACGTCCCAAGACGTATTTTGCGC
CATATTCAAAGAGGCTTCGCGGCAGCACGAGCAGGGTGGAATACCGTGCC
CCAGGTTCCACTGTCCCGTCGAGTTCACCGGGCTGCTCTCGTGGTTGCTG
TCACAGCAAGGCATAAAGGTCTTCCGTGCGACGACCATCATGGCCAGGGG
ACCCTATGAACACACCCCGTGGTCGAGCGATGCTGGTTGCGTTGTGGCTC
CGAGTATCGCCGGTTATTGAGTTCCACTGTCCCGTCGAGTTCACCGGGCT
GCTCTCGTGGTTGCTGTCACAGCAAGGCATAAAGGTCTTCCGTGCGACGA
CCATCATGGCCAGGGGACCCTATGAACACACCCCGTGGTCGAGCGATGCT
GGTTGCGTTGTGGCTCCGAGTATCGCCGGTTATTGA