mRNA_C-linearis_contig112.1517.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: D7FQS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS8_ECTSI) HSP 1 Score: 1290 bits (3339), Expect = 0.000e+0 Identity = 665/801 (83.02%), Postives = 728/801 (90.89%), Query Frame = 1
Query: 232 MDTQLRSLYECFEGARAGAVDYRDVVSCMVVLRRFKDIRDNPRKLFRELVLLYSEDDEEAVVRRQDALRVARIGAVHGGDILQTSARLDKYLAEEAGAWGLKPTFRELDVAFLMETIEANPSVLVAFRTQLWRRIPEAWRMRVLQAVEAMGFEKAGSGAMAIKERRAARWYTKTLSRRVVVAWKVFRNRAKQIRAQRARIEAVLRRQTLRAWHASASIDIVRRKRRATADQYGRIFTLRRFFYSIVKYVEVNKRLAAMAWKFSKRGKLVVAGVGLLRGVLRKQSMRLALQAWCETASLMNAWEFAVDLAEERLCRVVFSTFRDAVRAAVAARRAQDEAEMRAAAIAESLEEAERERVRLVEVAEERKKRLKAEEKAALMARKAAEHKERIEAARAGSVARDGQIMQRQREARRRRVYEDRVKVKCDFDATWEVKLEENVEREMQAAKRWLESDPQAPFRVQKELHVLKRKFYAAPTSETAELERALRDSSNAIFAHMANLLYKENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRHEDVCGQAGSGWKMYVSPVHAIMIFHNVETNEEIWDYKATNDDLLRVVKDNIVGEGGIEAKKAAAEEREREWEQLLRDRAATTMQRQYHARAARKRRALLRWKWDVEKVRAKNRETSLRATTIQSWWRALRARWLALRLLQITVEVLWDPGTNQAYYFNHGLGQATWEVPSMLRRWRGDDARMPSVPEWVFISRVFGQSYFYNTQSRMRQDEKPAGYMRCSSCQTQLASRR 2634
MDT+LRSLYEC+EGARAGAVDYRD++ C +VLRRFKDIRDNPRKLFR+L+LLYS DDE VVRRQDALRV RIGA+HGG ILQTS RLDKYLAEEA GLKPTFR+LD+ FLM+TIEANPS+LVAFRTQLW+RIPEAWR+ VLQAVEAMGFEKA SGAMA+KERRA RWYTKTLSRR++V WKVFRNRAKQIRAQR RI+ V RRQTLRAWHASA+I ++RRKRR ADQYGRI TLRR+FYSIVKYVEVNKRLAA+AWKFSK+GKLV+AGVGLLRGVLRK+SMRLALQAWCETASLMNAW FAVDLA ERLCR VF+ RD VRAAV ARRA+DEAEMRAAA+AES+EEAERERV L E+AEERKKR KAEEKAALMAR+AAEH E+IEAARAGSVARD +++QRQREARRRRVYE+RVKVK DFDA WEVKL E VEREM+ AK WL +DP+APF+VQKE+ +LKRKFYAAP ETAELERALRD +N IFAHMANL+YKENKTL FF+QFDKEGDGYL HEEFKGMVSSLN+KLS EQIRSVIR IDLDGGG+IDFPEFEAAVKRHEDVCGQAGS WKMYVSPVHAIM FHNVETNE +WDYKAT+ DLLRVVKDNIVG GIEAKK A E+RE+EWE+LLR+RAATTMQRQYHA AARKRRALLRWKWDVEK RAKNRET+L AT IQ WWR LRA+WLAL+LLQIT+EVLWDPG NQ YYFNHGL QA WEVPSMLRRWRG A+MPSVPEWV ISR+FGQSYFYNT+SR+RQDEKPAGY+RCSSCQTQLASRR
Sbjct: 1 MDTRLRSLYECYEGARAGAVDYRDILCCTIVLRRFKDIRDNPRKLFRDLILLYS-DDEGEVVRRQDALRVMRIGALHGGHILQTSTRLDKYLAEEARPRGLKPTFRDLDITFLMDTIEANPSILVAFRTQLWQRIPEAWRLGVLQAVEAMGFEKASSGAMAMKERRAVRWYTKTLSRRIIVGWKVFRNRAKQIRAQRERIQNVRRRQTLRAWHASAAIHVLRRKRRGVADQYGRICTLRRYFYSIVKYVEVNKRLAAVAWKFSKQGKLVMAGVGLLRGVLRKRSMRLALQAWCETASLMNAWGFAVDLAGERLCRRVFAALRDTVRAAVVARRAEDEAEMRAAALAESIEEAERERVLLAELAEERKKRQKAEEKAALMARRAAEHVEKIEAARAGSVARDAEVLQRQREARRRRVYENRVKVKNDFDAAWEVKLRETVEREMELAKEWLATDPEAPFKVQKEMKILKRKFYAAPLPETAELERALRDPANYIFAHMANLIYKENKTLQMFFNQFDKEGDGYLTHEEFKGMVSSLNVKLSREQIRSVIRTIDLDGGGFIDFPEFEAAVKRHEDVCGQAGSVWKMYVSPVHAIMTFHNVETNEILWDYKATDKDLLRVVKDNIVGLEGIEAKKRAVEDREKEWEELLRNRAATTMQRQYHAWAARKRRALLRWKWDVEKARAKNRETTLMATRIQCWWRILRAKWLALQLLQITIEVLWDPGLNQQYYFNHGLEQAAWEVPSMLRRWRGRGAKMPSVPEWVLISRLFGQSYFYNTRSRLRQDEKPAGYLRCSSCQTQLASRR 800
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: A0A836CKE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE2_9STRA) HSP 1 Score: 300 bits (769), Expect = 5.230e-83 Identity = 236/708 (33.33%), Postives = 353/708 (49.86%), Query Frame = 1
Query: 76 VRFLHNLVHQPPYRYHSIACALEATPGQGYTVTKAAFV-ASMMAAYRFDRKLQMDTQLRSLYECFEGARAGAVDYRDVVSCMVVLRRFKDIRDNPRKLFRELVLLYSEDDEEAVVRRQDALRVARIGAVHGGDILQTSARLDKYLAEEAGAWGLKPTFRELDVA--------------FLMETIEANPSVLVAFRTQLWRRIPEAWRMRVLQAVEAMGFEKAGSGAMAIKERRAARWYTKTLSRRVVVAWKVFRNRAKQIRAQRARIEAVLRRQTLRAW-----------------HASASIDIVR-------RKRRATADQYGR-------IFTLRRFFYSIVKYVEVNKRLAAMAWKFSKRGKLVVAGVGLLRGVLRKQSMRLALQAWCETASLMNAWEFAVDLAEERLCRVVFSTFRDAVRAAVAARRAQDEAEMRAAAIAESLEEAERERVR--LVEVAEERKKRLKAEEKAALMARKAAEHKERIEAARAGSVARDGQIMQRQREARRRRVYEDRVKVKCDFDATWEVKLEENVEREMQAAKRWLESD--PQAPFRVQKELHVLKRKFYAAPTSETAELERALRDSSNAIFAHMANLLYKENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRHEDVCGQAGSGWKMYVSPVHAIMIFHNVETNEEIWD 2049
V F + + R+ + A A ATP ++ A V AS + + D + + +LR+LY +GA GAVD R++ + ++LR+ + IR++PR+L L L+++D E ++ R DAL+V + A D+ T+ ++D++L E A ++ LKPTF+ L V+ ++ ++ + ++L A + +W R+P WR+ LQ E G + + AIK RAA + L V W+ +R A++ R +R + E VLR + +A+A++ R + R ATA+ R + R + R+ W S GK V+ GV R V R+ R AL+ WCETASLM+AW+FAV + ER R F R V A++ RR + E L E A+ER R AG VAR+ ++Q Q+ ARR+RV + A W V EE V + WL A + V+K + L+R+F AAP+ ETA+LERAL D +N +FA +A+ L+ + TL FF++FD E DGYLA EF+ +V+SL I+L GE++R++ R+ID DGGG ID EF+AA+ RHE VCG AGS WKMYVSPVH +M H++ET E+ D
Sbjct: 418 VSFTASATGKLQARHMAAAQAQAATPDFAASLAPAIHVDASALRLFPGDARAEQ--RLRALYRAHDGAAQGAVDLREIAAGALLLRQHRLIRESPRQLLVALCELFTKDGGE-LLARSDALKVVSLAATTATDVYLTAGKMDRHLEEMAASYNLKPTFKMLPVSPAGRGARDAAVSLDLFLDVLDTHTALLSAIASTMWARVPAQWRLTCLQEAEDAGIGRLSAALSAIKAARAAAHRRRAL---VGAHWRAWRRFAERCRVERHQRETVLRCRCAXXXXXXXXXXXXXXXXXXXXNAAAAMGAGRILRLRLAQLRAATAEAAQRLRRGALAVSDTERCLRRCGRAASARHRVTRALWTSSAAGKRVLLGVARWRAVERRARQRSALRRWCETASLMSAWDFAVATSGERPRRRAFRALRAYVAHALSQRRLETEXXXXXXXXXXXXXXXXXXXXXXXLAEEAQERA-RXXXXXXXXXXXXXXXXXXXXXXXXXAG-VARERAVLQEQQAARRQRVRDQAAAALEQHKAYWAVHTEELVAAARRRRCEWLSGGGGDAARYEVEKGVAALRRRFLAAPSPETAQLERALADPANIVFAFVASRLWSRHVTLRDFFNEFDVEHDGYLAPAEFETLVASLGIQLDGEKVRAMTRSIDADGGGLIDCDEFQAAMARHEQVCGHAGSPWKMYVSPVHGVMTLHSIETGEQRLD 1117
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: F0YL46_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL46_AURAN) HSP 1 Score: 233 bits (594), Expect = 1.190e-60 Identity = 231/901 (25.64%), Postives = 400/901 (44.40%), Query Frame = 1
Query: 64 KWAGVRFLHNLVHQPPYRYHSIACAL-EATPGQ----GYTVTKAAFVASMMAAYRFDRKLQMDTQLRSLYECFEGARAGAVDYRDVVSCMVVLRRFKDIRDNPRKLFRELVLLYSEDDEEA-VVRRQDALRVARIGAVHGGDILQTSARLDKYLAEEAGAWGLKPTFRELDVAFLMETIEANPSVLVAFRTQLWRRIPEAWRMRVLQAVEAMGFEKAGSGAMAIKERRAARWYTKTLSRRVVVAWKVFRNRAKQIRAQRARIEAVLRRQTLRAWHASASIDIVRR---KRRATADQYGRIFTLRRFFYSIVKYVEVN-KRLAAMAWKFSKRGKLVVAGVGLLRGVLRKQSMRLALQAWCETASLMNAWEFAVDLAEERLCRVVFSTFRDAVRAAVAARRAQDEAEMRAAAIAESLEEAERERVRLVEVAEERKKRLKAEE-KAALMARKAAEHKERIEAARAGSVARDGQIMQRQREARRRRVYEDRVKVKCDFDATWEVKLEENVEREMQAAKRWLESDPQAPFRVQKELHVLKRKFYAAPTSETAELERALRDSSNAIFAHMANLLYKENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRHEDVCGQAGSGWKMYVSPVHAIMIFHNVETNEEIWDYKATNDDLLRVVKDNIVGEGGIEAKKAAAEEREREWEQLLRDRAATTMQRQYHARAARKRRALLRWKWDVEKVRAKNRETSLRATTIQSWWRALRARWLALRLLQITVEVLWDPGTNQAYYFNHGLGQATWEVPSMLRRWRGDDARMPSVPEWVFISRVFGQSYFYN-----TQSRMRQDEKPAGYMRCSSCQTQLASRRCTVEERDLCFVCHR-----KEHIEGEER 2703
KW +R+LH+L +R + L + +PG T+ FV+++ + F+R++ + QL LY CF+GA VD+R+VV + + +P KL LYS A +V R D +R+ + A + S ++ +L + + + E + P V AFR+QLW+R+P+ ++ LQ E ++A + ++L R W + + ++ QR RI + + + L +W +++ RR +RR A G +RR N +R+ ++ F +R V G L+R + R A+Q W + + + A L + L + F+ + V AR A++++ + ++ A +E + +A+E+ +R K E+ K ++ K + +A A D + Q++AR +R+ E++ F A W + +E + A +RWL+S + V KE +KR+FY PT + E ER L+ S+ + M +L+++ + F Q+D++ G+L+H EF+ +V L I LS EQIR VI +D D GY+ E E A+ G + S W+MYV P ++ +HN+ T+E I++++ ++ L+ V K N + E +EA A W ++ + A+ + R Y +R+ L WK + + +AT +Q WWR++ A L L+ VE++ D +E L+R RG + +V + Q YF ++ +R KP GY RC+SC LA CT CF C R +E + G +R
Sbjct: 12 KWRLLRYLHSLRQHAAHRCVCVENILWKISPGHFKEHHETIGADLFVSALANGFGFERRVPVHHQLMQLYHCFDGAEENRVDWREVVCSLYAFDSTGHVHSHPIKLLTSFFRLYSLPTTNANIVPRVDVIRMISLAATTHAEFTAVS-QIGHHLPDM------------VKLTAFREALIGTPQVTEAFRSQLWKRLPDLSKLTYLQLQEDATARWFEGYIHQQNMKKAVKLRKQSLLCRSFRGWCQLSKKMRIVKIQR-RIVLLRKCRALISWWNLYAVE--RRASFERRQVAAVLGHRALVRRVVILRWHRWSCNERRVRHISGAFRRRAVDVSHGSFLVRRAMACVYRRDAIQRWSDWIKAASQADGATKLMRKLLAKRFFAGWHSHVHFVKLARTAEEDSIRNQIYLTAMIQGAGQELAATI-MADEQNQRSKREDGKQRALSDKLHTLAWKTRRRQAEHAADDRVKLAVQQDARAKRIAENKEDRAASFHAAWAAIERQYIEEQRLATRRWLDSGA-SKNHVSKEFKRIKREFYRPPTPRSMERERNLKALSSIVLIKMEAILFQKGIVMEHFIRQYDEDSSGFLSHNEFRSLVKDLPIDLSAEQIRLVIHTLDSDHDGYVGLKELEKALDIVHAHNGVSASPWRMYVDPAQDVICYHNLATDELIFEHRMSDRKLMEVTKSNFLAETELEAINHA-------WTRVRENYASVVLARMYRGFKSRRELGRLMWKIQARRQKKDTDRCEKQATRLQCWWRSILACQLYDIKLRHDVEIVPD----------------LFERRLCLQRHRGSIDYVLAVEQ--------NQMYFVKWSTSQERAHLRTWAKPPGYQRCTSCLRNLALLECTTTPGVFCFRCFRDIFDAREFMHGAKR 863
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: A0A5J9WAK3_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WAK3_9POAL) HSP 1 Score: 56.6 bits (135), Expect = 1.230e-5 Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1723 ANLLYKENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEF 1923
ANL ++ L F+ FDK GDGY+ EE ++SSL LS +++ +I+ +D D G +DF EF
Sbjct: 7 ANLTQEQIDALKEVFNFFDKNGDGYITSEELGSVMSSLGQNLSESELQDMIKVVDADCNGTVDFSEF 73
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: A0A8H7RSY7_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RSY7_9FUNG) HSP 1 Score: 56.6 bits (135), Expect = 2.050e-5 Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 1726 NLLYKENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRH 1944
N+ +E +L F +D++ DG + +EF ++ SLN+ S E+I S+++A+D + G IDF EF A+ RH
Sbjct: 4 NITQEELNSLKQAFSLYDRDSDGGITVKEFGDILKSLNVNGSTEEIESIVKAVDSNRDGCIDFNEFVVAMTRH 76
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: UPI0018A79F4E (calmodulin-beta-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI0018A79F4E) HSP 1 Score: 57.0 bits (136), Expect = 2.420e-5 Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1741 ENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRHED 1950
E K L F FDK G GY+ + + ++ L LS E+I +IR +D+DG G IDF EF A+ +E+
Sbjct: 122 EEKELRDAFKIFDKHGRGYICASDLRAVLQCLGEDLSEEEIEDMIREVDIDGDGRIDFEEFVKALGENEE 191
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: A0A1E5WDM3_9POAL (Calmodulin n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5WDM3_9POAL) HSP 1 Score: 55.1 bits (131), Expect = 4.210e-5 Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query: 1774 FDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEF 1923
FDK GDGY+ EE ++ SL L+ +++ +I+ +D DG G I+FPEF
Sbjct: 24 FDKNGDGYITSEELGAVIKSLGQNLTESEVQDMIKEVDADGNGTIEFPEF 73
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: UPI001F5D6C0D (calmodulin-like protein 5 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D6C0D) HSP 1 Score: 55.5 bits (132), Expect = 4.250e-5 Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1774 FDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRHEDVC-GQAGS 1971
FDK+GDG + EE +V SL + E++R ++R +D DG G I+F EF A V R ++ AGS
Sbjct: 27 FDKDGDGRITAEELSTVVRSLGQSPTPEELRDMVRDVDADGNGTIEFAEFLALVSRQQEAARADAGS 93
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: A0A0N4XYV8_NIPBR (Uncharacterized calcium-binding protein (inferred by orthology to a C. elegans protein) n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XYV8_NIPBR) HSP 1 Score: 56.2 bits (134), Expect = 4.420e-5 Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 1
Query: 1738 KENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRHEDV 1953
KE K F+ FD +G G + +EE K + S+ + + +I +VIR +D DG G IDF EF A +K+ + +
Sbjct: 50 KELKEYRQLFNMFDTDGSGAIGNEELKQAMFSIGMHANEAEIDNVIREVDADGNGEIDFEEFCACMKKSQSI 121
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Match: A0A286RXR2_PROCL (Neo-calmodulin-like protein (Fragment) n=1 Tax=Procambarus clarkii TaxID=6728 RepID=A0A286RXR2_PROCL) HSP 1 Score: 55.8 bits (133), Expect = 4.870e-5 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1741 ENKTLHTFFHQFDKEGDGYLAHEEFKGMVSSLNIKLSGEQIRSVIRAIDLDGGGYIDFPEFEAAVKRHED 1950
E K L F FDK G GY+ + + ++ L LS E+I +IR +D+DG G IDF EF A+ +++
Sbjct: 109 EEKELRDAFKIFDKHGRGYICASDLRAVLQCLGEDLSEEEIEDMIREVDIDGDGRIDFEEFVKALGENDE 178 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1517.1 >prot_C-linearis_contig112.1517.1 ID=prot_C-linearis_contig112.1517.1|Name=mRNA_C-linearis_contig112.1517.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=942bp MLPDDLLGAEQGCCTDRCRRRKWAGVRFLHNLVHQPPYRYHSIACALEATback to top mRNA from alignment at C-linearis_contig112:152571..157931+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1517.1 ID=mRNA_C-linearis_contig112.1517.1|Name=mRNA_C-linearis_contig112.1517.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5361bp|location=Sequence derived from alignment at C-linearis_contig112:152571..157931+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:152571..157931+ >mRNA_C-linearis_contig112.1517.1 ID=mRNA_C-linearis_contig112.1517.1|Name=mRNA_C-linearis_contig112.1517.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5652bp|location=Sequence derived from alignment at C-linearis_contig112:152571..157931+ (Chordaria linearis ClinC8C monoicous)back to top |