mRNA_C-linearis_contig112.1510.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: D8LNJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ5_ECTSI) HSP 1 Score: 663 bits (1710), Expect = 4.230e-224 Identity = 433/720 (60.14%), Postives = 481/720 (66.81%), Query Frame = 1
Query: 370 FPSEPSYVSQHHEDEEEQQD---ELEVTGEGTAGGPFGLKKVLFVRKKSEKSVASKEEPSFKDRFSKLGAGVGEKFAAFGSIIQEHGSKNTAAAGGPTPKVSEGVSAADGISEMPLVTRQGASPP-GPPNVDQTPQLAMEYFQEYELTFSSKPKFTVVGGPDGEGAVVSWE--------GSDIAAAAVPPSGAAVIAVSGRSVADSSPADVTALLMGSGGGEDGDSESREGQDNYVGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEVFRTKMKAMATGLGNFFQVKDSGGSVVRDGALSASGGNADGEPAA-------AAPDAFVLTFSAKGGTAEELPFTLAEMVGGLGVIVAAVRDDYAESLVKAEEAGVVSAGVVGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXRVRVLEPGALLLRVAGQNVEGKGLQRVRKVLEAAAAEHLAVKILFRHAPPIYRASVAAELALEHSKTPHVHVGTWQPLLRRRAGVTLGAGGDAENGXXXXXXR-VIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDV--LSMQTVTLPRTISSAYAGTFEGRPSSFQQAVRLWFSFPDERTVSLQRQPTLEKLGLLHVDTSGVG--IGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAYRSLAPLPFGEGQGWAAAVLPALESGGGDRITLTFV 2457
P S V+ + +E+Q+D ELEVTGEGTAGGPFGLKKVLFVRKKSEK V SKEEPSFKDRF+KLGAGVGE+FAAFG IIQEHGSK+ AA+G PT V+E SA D SE+ V QG + GPP + Q AMEYFQEYE+TF++KP F++V G DG GAVVSW+ S A A VPPSGAAVIAVSG SVA+ ADV LL +G D E +DN XXXX GGEVFR KMKAMATG+GN FQ K++ GS VRDG+ ++GG P+A A PDAF LTFS T E+LPFT+AE+VGGLGVIVAAVRDDYAE L+ AEEAGVVSAG GVA XXXXXXXXXX +L PGAL+LRVAGQNVEGKG+ RVRK LE AA EH AVKILFR APPIYRASVAAELALE SK P VHVGTWQPLL+RRAGVT+ GD ENGXXXXXX +IGLGY G R VG R TV LPR + SAYAGTFEGRPSSFQQA RLWFSFP ERTV+LQRQ TLEKLGLLHV+T G G IG+WVTI AADASPC+ AG+PVGE S+LT VNGFDVSPPAYRSLAP FG+G+GWAAAVLPALESGGGD ITLTFV
Sbjct: 10 LPVRHSPVANPPDQDEQQKDSAEELEVTGEGTAGGPFGLKKVLFVRKKSEKGVGSKEEPSFKDRFNKLGAGVGERFAAFGHIIQEHGSKSAAASGSPTSGVAEKFSAPDATSELAQVAPQGGTASAGPPASEHPQQQAMEYFQEYEVTFTTKPTFSLVEGADGRGAVVSWDTGTAPPSADSGGAPAPVPPSGAAVIAVSGESVAEKKLADVLELLEAAGKDLDTGREEDPAKDN------------------GDKLSVEVPPDPAGXXXXGLVVRFREKMKPQHETGSAGGEVFRNKMKAMATGIGNLFQAKETAGSAVRDGSNVSAGGAG---PSAXXXXXXXAVPDAFPLTFSTGSETVEDLPFTMAEVVGGLGVIVAAVRDDYAEHLIVAEEAGVVSAGTAGVAXXXXXXXXXXXGGRNDGPEEG---------LLVPGALILRVAGQNVEGKGMGRVRKALETAAVEHSAVKILFRRAPPIYRASVAAELALEQSKVPQVHVGTWQPLLKRRAGVTMS--GDGENGXXXXXXXXIIGLGY--------------------GRRGVGGRPGDHGTGAPTVALPRNVKSAYAGTFEGRPSSFQQAARLWFSFPGERTVTLQRQATLEKLGLLHVETRGGGGAIGSWVTITAADASPCAAAGVPVGETSLLTHVNGFDVSPPAYRSLAPRAFGDGEGWAAAVLPALESGGGDSITLTFV 677
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: A0A8K1CUI1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUI1_PYTOL) HSP 1 Score: 90.9 bits (224), Expect = 1.080e-15 Identity = 74/218 (33.94%), Postives = 103/218 (47.25%), Query Frame = 1
Query: 1816 PHVHVGTWQPLLRRRAGVTLGAGGDAENGXXXXXXRVIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVTLPRTIS-----------SAYAGTF---EGR-PSSFQQAVRLWFSFPDERTVSLQR-QPTLEKLGLLHVDTSGVGIGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAYRSLAPLPFGEGQGWAAAVLPALE 2421
P++H+GTW P++ VT G + + E+EDV T RA ++ FR +G V +LS+QTVTLP ++ S Y G F EG F QAVRLWFSF E+TVS+ + TL L D W+ + A SP +AG+ G+ LT VNG DVSP A+ S+ + W +V+P +E
Sbjct: 158 PYIHIGTWVPMV-----VTDKV---RPTGGLLNVLKPLTTA----EYEDVLLTTTRAREYIKRFRRIGRPVTILSLQTVTLPLAVACPSAISQHGARSLYDGVFHLSEGDLQRGFVQAVRLWFSFDCEQTVSVTKVNGTLGVKPLRQQD-------GWIVVQALPGSPAFEAGMR-GDEVFLTHVNGVDVSPHAFPSVCDR-YASLISWKDSVIPLVE 354
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: A0A5D6XJ30_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJ30_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 5.990e-15 Identity = 74/232 (31.90%), Postives = 108/232 (46.55%), Query Frame = 1
Query: 1816 PHVHVGTWQPLL-RRRAGVTLG---AGGDAENGXXXXXXRVIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVTLPRTISSAYAGTFEG---------------RPSSFQQAVRLWFSFPDERTVSLQRQPTLEKLGLLHVDTSGVGIGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAYRSLA--------PLPFGEGQG---WAAAVLPALE 2421
P++H+GTW PL+ +A LG AGG + ++ E+EDV T RA +++ FR VG V + S+ T LP ++S A + +G F QAVRLWFSF E+TVS+ + LGL + W+ + A SP DAG+ G+ + LT VNG DVSP A+ ++ P P GQ W +V+P ++
Sbjct: 219 PYIHIGTWMPLMVTDKAKPGLGGVVAGGVSAGSTGTLLSHMLKPAT--SEYEDVLVTTNRAREYISRFRRVGRPVTIHSIHTTLLPLAVASPNAISQQGPRVLYEGVYALSEAEAQRGFIQAVRLWFSFDCEQTVSVTK--VHGALGLKPLRQQD----GWIVVQALPGSPAFDAGMR-GDEAFLTHVNGVDVSPHAFPAVTSGAMPSHQPPPSAGGQSHVSWKESVIPLVD 441
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: A0A662XH51_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XH51_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.980e-14 Identity = 67/207 (32.37%), Postives = 96/207 (46.38%), Query Frame = 1
Query: 1798 LEHSKTPHVHVGTWQPLL---RRRAGVTLGAGGDAENGXXXXXXRVIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVTLPRTISSA-----------YAGTF----EGRPSSFQQAVRLWFSFPDERTVSLQR-QPTLEKLGLLHVDTSGVGIGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAYRSL 2361
+E P++H+GTW P++ RR A + L +A+ +EDV T RA +++ FR +G V +LS+QT TLP + Y G + E F QAVRLWFSF E+T+S+ + + TL L D W+ + A PC DAG+ E LT VNG DVSP A+ ++
Sbjct: 154 MEGYHEPYIHIGTWVPVMVKDRRPAPLPLMKSTEAQ-------------------YEDVLLTTNRAREYISNFRRMGRPVTILSIQTCTLPLAAACPSAISQQGPRVLYEGVYHLNAEDAQRGFVQAVRLWFSFDCEQTISVTKVKGTLGLKPLRQQD-------GWIVVQALPGLPCFDAGMRRDE-VFLTHVNGVDVSPHAFPAV 333
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: H3GID4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GID4_PHYRM) HSP 1 Score: 88.2 bits (217), Expect = 3.080e-14 Identity = 67/208 (32.21%), Postives = 97/208 (46.63%), Query Frame = 1
Query: 1789 ELALEHSKTPHVHVGTWQPLL--RRRAGVTLGAGGDAENGXXXXXXRVIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVTLPRTISSA-----------YAGTF----EGRPSSFQQAVRLWFSFPDERTVSLQRQPTLEKLGLLHVDTSGVGIGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAYRSL 2361
E ++E P++H+GTW P++ ++A + L G A+ +EDV T RA ++N FR G V +LS+QT TLP + Y G F + F QAVRLWFSF E+T+S+ + LGL + WV + A SPC +AG+ E LT VNG DVSP ++ ++
Sbjct: 152 ETSVEGYHEPYIHIGTWVPVMLKEKKAPLPLMKGPPAQ-------------------YEDVLVTTNRAREYINNFRRTGRPVTILSIQTCTLPLAAACPSAISQQGPRILYDGVFHLSADEMQRGFVQAVRLWFSFDCEQTISVTK--VNGALGLKPLRQQD----GWVVVQALPGSPCFEAGMRRDE-VFLTHVNGVDVSPHSFPAV 333
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: A0A2D4C876_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C876_PYTIN) HSP 1 Score: 88.6 bits (218), Expect = 3.270e-14 Identity = 67/198 (33.84%), Postives = 93/198 (46.97%), Query Frame = 1
Query: 1816 PHVHVGTWQPLL---RRRAGVTLGAGGDAENGXXXXXXRVIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVTLPRTISSAYAGTFEGRPS---------------SFQQAVRLWFSFPDERTVSLQR-QPTLEKLGLLHVDTSGVGIGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAY 2352
P++H+GTW P+L R RA L + L ++EDV T RA +++ FR +G V ++S+QT+TLP I+S A + G S F QAVRLWFSF E+T+S+ + TL L D W+ + A SP +AG+ E LT VNG DVSP A+
Sbjct: 157 PYIHIGTWVPMLITDRSRAAANL----------------LNVLKPAANDYEDVLMTTNRAREYISRFRRIGRPVTIISIQTITLPLAIASPCAISQHGARSLYDGVYHLSEGDLQKGFVQAVRLWFSFDCEQTISVTKVNGTLGLKPLRQQD-------GWIVVQALPGSPAFEAGMRSDE-VFLTHVNGVDVSPHAF 330
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: A0A2P4Y8E0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8E0_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.030e-13 Identity = 67/239 (28.03%), Postives = 104/239 (43.51%), Query Frame = 1
Query: 1789 ELALEHSKTPHVHVGTWQP-LLRRRAGVTLGAGGDAENGXXXXXXRVIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVTLPRTISSA-----------YAGTFEGRPSSFQ----QAVRLWFSFPDERTVSLQRQPTLEKLGLLHVDTSGVGIGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAYRSLAPLPFGEGQG------------WAAAVLPALE 2421
E +E P++H+GTW P +++ + + L + ++EDV T RA ++N FR G V ++S+QT TLP + Y G + P Q QAVRLWFSF E+T+S+ + LGL + W+ + A SPC +AG+ E +T VNG DVSP ++ ++ P + Q W +V+P +E
Sbjct: 146 ETNIEGYHEPYIHIGTWVPVMIKEKKAIALSP-----------------MKGSSAQYEDVLVTTNRAREYINNFRRTGRPVTIISIQTCTLPLAAACPSAISQQGPRILYEGVYHLNPDEVQRGFVQAVRLWFSFDCEQTISVTK--VNGALGLKPLRQQD----GWIVVQALPGSPCFEAGMRRDE-VYITHVNGVDVSPHSFPAVGTAPPQQSQTPAQPNQKTGQVTWQDSVVPLVE 360
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Match: D0NCH6_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCH6_PHYIT) HSP 1 Score: 79.0 bits (193), Expect = 6.390e-12 Identity = 63/226 (27.88%), Postives = 92/226 (40.71%), Query Frame = 1
Query: 1789 ELALEHSKTPHVHVGTWQPLLRRRAGVTLGAGGDAENGXXXXXXRVIGLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVTLPRTISSAYAGTFEGR---------------PSSFQQAVRLWFSFPDERTVSLQRQPTLEKLGLLHVDTSGVGIGAWVTIAAADASPCSDAGIPVGENSILTDVNGFDVSPPAYRSLAPLPFGEGQGWAAAVLPALE 2421
E +E + P++H+GTW P +EDV T RA ++N FR G V ++S+QT TLP + A + +G F QAVRLWFSF E+T+S+ + L L W+ + A SPC +AG+ E LT VNG DVSP ++ S + W +V+P ++
Sbjct: 143 EANVEGYQEPYIHIGTWVP------------------------------------YEDVLVTTNRARGYINNFRRAGRPVTIISIQTCTLPLAAACPSAISQQGPRILYDGVYHLSSDEVQQGFVQAVRLWFSFDCEQTISVTKVNGAMGLKPLRQQDG------WIVVQALPGSPCFEAGMRRDE-VFLTHVNGVDVSPHSFPSTGQVT------WQDSVVPLVD 319 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1510.1 >prot_C-linearis_contig112.1510.1 ID=prot_C-linearis_contig112.1510.1|Name=mRNA_C-linearis_contig112.1510.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=729bp MEPLESPRVAVVGGVLSRGEDTDGERTDDEVDFPSEPSYVSQHHEDEEEQback to top mRNA from alignment at C-linearis_contig112:73890..78476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1510.1 ID=mRNA_C-linearis_contig112.1510.1|Name=mRNA_C-linearis_contig112.1510.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4587bp|location=Sequence derived from alignment at C-linearis_contig112:73890..78476+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:73890..78476+ >mRNA_C-linearis_contig112.1510.1 ID=mRNA_C-linearis_contig112.1510.1|Name=mRNA_C-linearis_contig112.1510.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4374bp|location=Sequence derived from alignment at C-linearis_contig112:73890..78476+ (Chordaria linearis ClinC8C monoicous)back to top |