mRNA_C-linearis_contig111.1501.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1501.1
Unique NamemRNA_C-linearis_contig111.1501.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig111.1501.1 vs. uniprot
Match: D7G507_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G507_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 3.670e-135
Identity = 207/233 (88.84%), Postives = 213/233 (91.42%), Query Frame = 1 
Query:    1 MFQSAPVGKKEAAAKFKAEAGCNQAPKNMDDI--RDAGDVLDAVLTEDSTKVPVKEGVDVFFDPEKFKEKKTLDVFMKTFPYDAGELGVREGTEILVGSSKGKVVNTKHDRVMIEVGGRRLDVSVLFVLEHAVGGQAVTTVEEAQRKFVLFLHQVVSIPDFFIPNHYRIEGKASCAQSRYTTDAEAEIAKLQLKQRVKPTPERQGNITRLQKRLDAMTKIKPMIWRVLRKISV 693
            MF+ APVGKKEAAAKFKAEA  NQAPKNM DI  RDA DVLDAVLT+DSTKVPVKEGVDVFFDPEKF EKKTLDVFMKTFPYDA ELGVRE TEILVGSSKGKVVNTKHDR MIEVGGR L VSVLFVL+HAVGGQ VTTVE AQRKFVLFL QV++IP+FFIPNHYRIEGKASCAQSRYTTDAEAEIAKLQLKQRVKPTPERQG ITR QKRLD M KIKPMIWRVLRKISV
Sbjct:    1 MFKRAPVGKKEAAAKFKAEAAGNQAPKNMGDITLRDACDVLDAVLTDDSTKVPVKEGVDVFFDPEKFNEKKTLDVFMKTFPYDAVELGVRERTEILVGSSKGKVVNTKHDRAMIEVGGRSLAVSVLFVLQHAVGGQLVTTVEAAQRKFVLFLQQVIAIPEFFIPNHYRIEGKASCAQSRYTTDAEAEIAKLQLKQRVKPTPERQGKITRFQKRLDGMIKIKPMIWRVLRKISV 233
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BLAST of mRNA_C-linearis_contig111.1501.1 vs. uniprot
Match: D7G685_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G685_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 1.390e-84
Identity = 140/157 (89.17%), Postives = 146/157 (92.99%), Query Frame = 1 
Query:  223 MKTFPYDAGELGVREGTEILVGSSKGKVVNTKHDRVMIEVGGRRLDVSVLFVLEHAVGGQAVTTVEEAQRKFVLFLHQVVSIPDFFIPNHYRIEGKASCAQSRYTTDAEAEIAKLQLKQRVKPTPERQGNITRLQKRLDAMTKIKPMIWRVLRKISV 693
            MKTFPYDAGELGVREGTEILVGSS+GKVVNTKHDR MIEVGGR LDVSVLFVLEHAV  Q V TVE AQRKF+LFLHQVV+IPDFF+PNHYRIEGKASCAQSR+TTDAEAEIAKLQLKQRVKPT ERQG ITRLQKRLD MTKI+PMIWRVLR ISV
Sbjct:    1 MKTFPYDAGELGVREGTEILVGSSRGKVVNTKHDRAMIEVGGRTLDVSVLFVLEHAVREQGVATVEAAQRKFLLFLHQVVAIPDFFVPNHYRIEGKASCAQSRFTTDAEAEIAKLQLKQRVKPTAERQGKITRLQKRLDGMTKIRPMIWRVLRVISV 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G507_ECTSI3.670e-13588.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G685_ECTSI1.390e-8489.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:360280..360972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size693
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927484.2856216-CDS-C-linearis_contig111:360279..3609721622927484.2856216-CDS-C-linearis_contig111:360279..360972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 360280..360972 -
1690879727.4765015-CDS-C-linearis_contig111:360279..3609721690879727.4765015-CDS-C-linearis_contig111:360279..360972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 360280..360972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1501.1prot_C-linearis_contig111.1501.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 360280..360972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1501.1

>prot_C-linearis_contig111.1501.1 ID=prot_C-linearis_contig111.1501.1|Name=mRNA_C-linearis_contig111.1501.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=231bp
MFQSAPVGKKEAAAKFKAEAGCNQAPKNMDDIRDAGDVLDAVLTEDSTKV
PVKEGVDVFFDPEKFKEKKTLDVFMKTFPYDAGELGVREGTEILVGSSKG
KVVNTKHDRVMIEVGGRRLDVSVLFVLEHAVGGQAVTTVEEAQRKFVLFL
HQVVSIPDFFIPNHYRIEGKASCAQSRYTTDAEAEIAKLQLKQRVKPTPE
RQGNITRLQKRLDAMTKIKPMIWRVLRKISV
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mRNA from alignment at C-linearis_contig111:360280..360972-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1501.1 ID=mRNA_C-linearis_contig111.1501.1|Name=mRNA_C-linearis_contig111.1501.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at C-linearis_contig111:360280..360972- (Chordaria linearis ClinC8C monoicous)
ATGTTCCAGAGTGCCCCGGTGGGGAAGAAGGAGGCGGCGGCAAAGTTTAA
GGCAGAAGCTGGCTGCAATCAGGCGCCGAAGAACATGGATGACATTCGGG
ACGCGGGTGATGTGCTTGACGCAGTTCTCACCGAGGACTCCACGAAGGTT
CCGGTGAAGGAAGGCGTCGACGTTTTCTTTGATCCCGAGAAATTCAAGGA
GAAGAAGACGCTCGACGTGTTCATGAAAACTTTCCCGTACGACGCGGGCG
AGCTTGGTGTGAGGGAAGGCACGGAGATCCTTGTGGGAAGTTCCAAGGGG
AAGGTGGTGAACACGAAGCACGACCGCGTCATGATCGAAGTTGGTGGACG
AAGATTGGATGTGTCGGTCCTCTTCGTCCTAGAACACGCCGTGGGAGGGC
AAGCGGTGACAACTGTGGAGGAAGCTCAGCGCAAGTTTGTGTTGTTCCTA
CACCAGGTAGTCTCCATCCCGGACTTCTTCATCCCGAACCACTATCGGAT
CGAAGGGAAAGCTTCCTGCGCCCAGAGTAGGTACACTACGGATGCCGAGG
CAGAGATCGCCAAGTTGCAACTCAAGCAGAGGGTCAAGCCTACCCCCGAA
CGCCAGGGCAACATCACCCGCCTTCAGAAGAGGTTGGACGCCATGACCAA
GATCAAGCCGATGATTTGGAGGGTTCTCCGTAAAATTTCGGTA
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Coding sequence (CDS) from alignment at C-linearis_contig111:360280..360972-

>mRNA_C-linearis_contig111.1501.1 ID=mRNA_C-linearis_contig111.1501.1|Name=mRNA_C-linearis_contig111.1501.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at C-linearis_contig111:360280..360972- (Chordaria linearis ClinC8C monoicous)
ATGTTCCAGAGTGCCCCGGTGGGGAAGAAGGAGGCGGCGGCAAAGTTTAA
GGCAGAAGCTGGCTGCAATCAGGCGCCGAAGAACATGGATGACATTCGGG
ACGCGGGTGATGTGCTTGACGCAGTTCTCACCGAGGACTCCACGAAGGTT
CCGGTGAAGGAAGGCGTCGACGTTTTCTTTGATCCCGAGAAATTCAAGGA
GAAGAAGACGCTCGACGTGTTCATGAAAACTTTCCCGTACGACGCGGGCG
AGCTTGGTGTGAGGGAAGGCACGGAGATCCTTGTGGGAAGTTCCAAGGGG
AAGGTGGTGAACACGAAGCACGACCGCGTCATGATCGAAGTTGGTGGACG
AAGATTGGATGTGTCGGTCCTCTTCGTCCTAGAACACGCCGTGGGAGGGC
AAGCGGTGACAACTGTGGAGGAAGCTCAGCGCAAGTTTGTGTTGTTCCTA
CACCAGGTAGTCTCCATCCCGGACTTCTTCATCCCGAACCACTATCGGAT
CGAAGGGAAAGCTTCCTGCGCCCAGAGTAGGTACACTACGGATGCCGAGG
CAGAGATCGCCAAGTTGCAACTCAAGCAGAGGGTCAAGCCTACCCCCGAA
CGCCAGGGCAACATCACCCGCCTTCAGAAGAGGTTGGACGCCATGACCAA
GATCAAGCCGATGATTTGGAGGGTTCTCCGTAAAATTTCGGTAATGTTCC
AGAGTGCCCCGGTGGGGAAGAAGGAGGCGGCGGCAAAGTTTAAGGCAGAA
GCTGGCTGCAATCAGGCGCCGAAGAACATGGATGACATTCGGGACGCGGG
TGATGTGCTTGACGCAGTTCTCACCGAGGACTCCACGAAGGTTCCGGTGA
AGGAAGGCGTCGACGTTTTCTTTGATCCCGAGAAATTCAAGGAGAAGAAG
ACGCTCGACGTGTTCATGAAAACTTTCCCGTACGACGCGGGCGAGCTTGG
TGTGAGGGAAGGCACGGAGATCCTTGTGGGAAGTTCCAAGGGGAAGGTGG
TGAACACGAAGCACGACCGCGTCATGATCGAAGTTGGTGGACGAAGATTG
GATGTGTCGGTCCTCTTCGTCCTAGAACACGCCGTGGGAGGGCAAGCGGT
GACAACTGTGGAGGAAGCTCAGCGCAAGTTTGTGTTGTTCCTACACCAGG
TAGTCTCCATCCCGGACTTCTTCATCCCGAACCACTATCGGATCGAAGGG
AAAGCTTCCTGCGCCCAGAGTAGGTACACTACGGATGCCGAGGCAGAGAT
CGCCAAGTTGCAACTCAAGCAGAGGGTCAAGCCTACCCCCGAACGCCAGG
GCAACATCACCCGCCTTCAGAAGAGGTTGGACGCCATGACCAAGATCAAG
CCGATGATTTGGAGGGTTCTCCGTAAAATTTCGGTA
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