mRNA_C-linearis_contig111.1500.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC) HSP 1 Score: 335 bits (860), Expect = 2.690e-111 Identity = 178/313 (56.87%), Postives = 219/313 (69.97%), Query Frame = 3
Query: 78 CDKDGAPVQLKYLLGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
CD A + L + + E G + LRINGKG+LTPVA+AKTLVEI+F +PGK+AR+FRRKSA+++CRLLGGD TLV EIEQRRA+L+++ GR T++FLLG S + + + GMP+GF YL R+ VA +VV L+L RQR DM+ Y SLR +GVELDPRTM+EIRDNVSLLTKR L+IE + T + DPKTPTHVLG+E+RG+E+GIVVVA+KMGVRVP MSG IGKL K LYKKKYDLP DW+DF+KRQTL+ GRP+MENCYYERDED
Sbjct: 34 CDASSANTAFRRLKDDMLKSRAEFG-AACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTD-----DDFTGMPVGFRYLEESQRRAVAGEVVALAL---------------------KRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLSIEEREDSTTRLV----DPKTPTHVLGREERGNESGIVVVASKMGVRVPPSMSGPIGKLMKILYKKKYDLPNDWNDFVKRQTLYLGRPVMENCYYERDED 315
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC) HSP 1 Score: 325 bits (833), Expect = 6.630e-107 Identity = 193/318 (60.69%), Postives = 225/318 (70.75%), Query Frame = 3
Query: 78 CDKDGAPVQLKYLLGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLG-GSPESIEG----TAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
C A L +LK F +LGN I +INGKGK TPVADAKTLVEI+FL+PG+ A FRRKSA KVCRL+GGD +LV EIEQR L+++ +GRAT++FLL GS E+ +A+++ Y+GMP GF +L D+ VAK+VV+ Q L+ + XXXXXXXXXX RQRC DMV RY +L DIGV+LD RT IEIRDNVSLLTKRDLA+EG+ T DP TPTH L +RGHE GIVVVAAKMGVRVP MSG+IGKL K LYKKKY L DWDDF KRQTLFHGRPI ENCYY RDED
Sbjct: 34 CSSSAANTNLS----NLKTRFSDLGNNIA-HAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQRCTALESTPEGRATQAFLLNPGSSENSSSAPCASAQLKKYEGMPAGFSFLDPSDQCKVAKEVVQ-------QALDGRKXXXXXXXXXXKRQRCEDMVGRYKTLMDIGVKLDDRTKIEIRDNVSLLTKRDLALEGSQDTEICAPI---DPTTPTHTLCAGERGHETGIVVVAAKMGVRVPPAMSGAIGKLMKKLYKKKYGLSVDWDDFPKRQTLFHGRPINENCYYARDED 336
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI) HSP 1 Score: 271 bits (694), Expect = 3.640e-86 Identity = 147/313 (46.96%), Postives = 199/313 (63.58%), Query Frame = 3
Query: 78 CDKDGAPVQLKYLLGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
CD A G L + PELG+ T ++NGKG TPVADAKTL+EIV+L+PGK A FRR+S+ KVCRLLGGD +LV+EIE R A LQ++ GR T+ FLL G E++E + GMP GF YL DR VAK++++ L Q L+ R+R D+V Y +++DIGV LD RT+IE+RD+V++L++++ + A T + Q D T TH L QRG E GIVVV++K+G+RVP + G +GKL + LY KKY LP +W+ F+KRQTL +GRP+MENC++ RDED
Sbjct: 33 CDSSNANTAF----GRLLQAHPELGSRCTRS-KLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGREEAVE------TFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQALK--------------RKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVEDDAVAVATPLLQ---DSNTSTHELASAQRGKETGIVVVSSKIGIRVPQNLCGKVGKLMRQLYIKKYALPGNWNAFVKRQTLINGRPVMENCFFSRDED 317
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE) HSP 1 Score: 284 bits (726), Expect = 2.430e-83 Identity = 152/291 (52.23%), Postives = 201/291 (69.07%), Query Frame = 3
Query: 144 ELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
ELG T QLRINGKGK TPVADAKTL+EIV+L+PGK AR+FRR+S+ KVCRLLGGD +LV+EIE R A LQ++ GRAT+ FLLG E++E + GMP GF YL DR AKQ++EL+L + L+ R+R DMV Y +L+D+GV LD RT+IE+RDNV++L+++D+ + A + D TPTH LG +QRG E GIVVV++K+G+RVP MSG++GK+ K +Y +KY+L D+ F +RQTLF+GRPI+EN Y+ERDED
Sbjct: 948 ELGTRCT-QLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAVE------TFDGMPAGFRYLPVEDRAQFAKQMLELNLEMSKVALK--------------RKRVDDMVQSYRALQDLGVLLDGRTLIELRDNVTILSRQDVMVNNAVAIAAPLLH---DSTTPTHELGADQRGKETGIVVVSSKIGIRVPQNMSGTVGKMMKQMYIRKYELAPDFSGFARRQTLFNGRPILENLYFERDED 1214
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: Q6XM54_9PHYC (FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM54_9PHYC) HSP 1 Score: 224 bits (570), Expect = 5.370e-66 Identity = 124/286 (43.36%), Postives = 182/286 (63.64%), Query Frame = 3
Query: 168 QLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLV---RERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
+++ING+G++TPVADAKTL+ I++L+PG+ FR +SA + R+LGGD L EI+Q+ A+LQ + +GRA + F+ +P++ + ++ F +LG R +A+Q L +ERQ EQ+ ++ +D++D Y SL++I VE+D RT +EIRD VS+LT++ +EG + + + +DP TPTHVL E+RG E IVVV+AKM VRVP +SG +GKL + Y KY LP +W+DFIKRQT+ HGRP +EN YYERD D
Sbjct: 185 KIQINGRGRVTPVADAKTLIYIIWLLPGRAVAHFRAQSAEIIARVLGGDLRLAQEIQQQCAKLQETPEGRAFQDFM---APDAKKQKMDM---------FEFLGPSKRVEIAEQFYAEKLKAIQQERQAKEQELK----------KKSITDIIDVYQSLKNIDVEIDDRTKVEIRDKVSILTRQ---MEGQGSHASPPLLLCEDPSTPTHVLDAERRGQETNIVVVSAKMNVRVPPALSGKVGKLMRKKYINKYKLPTNWNDFIKRQTILHGRPCLENTYYERDAD 445
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: UPI0000161E55 (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E55) HSP 1 Score: 189 bits (481), Expect = 1.590e-55 Identity = 106/233 (45.49%), Postives = 149/233 (63.95%), Query Frame = 3
Query: 318 TLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
+LV+EIE R LQ++ +GRAT+SFLL G E +E +++++GMP F Y+ DR +AK+++E L L+ RQR +++ Y SLRDIGV LD RT+IE+ DNV++L+++DL + T T + Q D TPTH L QRG E GIVVV+AK+G+RVP + G++GKL K LY KKY L +++ FIKR+T+F+GRP +EN YY RDED
Sbjct: 2 SLVSEIEARHNSLQSTEEGRATQSFLLDGR-EEVEA---IDSFEGMPPAFKYIDAKDRGDLAKRMIEQQLQESTVALK--------------RQRVDNLIQSYKSLRDIGVNLDGRTLIELCDNVTILSRQDLVVSDAVPTPTPLLQ---DSSTPTHELDAAQRGRETGIVVVSAKIGLRVPQHLCGTVGKLMKKLYIKKYRLSSNFKAFIKRETIFNGRPGLENTYYARDED 213
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: Q6XLT8_9PHYC (FirrV-1-K1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT8_9PHYC) HSP 1 Score: 187 bits (475), Expect = 1.600e-52 Identity = 125/298 (41.95%), Postives = 174/298 (58.39%), Query Frame = 3
Query: 171 LRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPES-IEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXR--------QRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTK---RDLAIE----GTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
++INGKG TPVAD TLVEI++LIPG R FR SA + R LGGD EI + +LQ + +GR + F+L ++ +E + + + L ++ + K+++ L + R V XXXXXXXXXXXX + + ++ Y SL+D+GV LD RT +E+RDNVS++ K +D + G RT DP PTH LG ++RG E+GIV V+ +GVRVP GMSG +GK K LY +KY L + W+DF+KR+TLF GRPI EN Y+ RD+D
Sbjct: 97 IKINGKGHTTPVADVATLVEIIWLIPGSAVRQFRAHSAEALVRALGGDLAHAREIAEHHIKLQETPEGREFQDFMLPDRKKARVESVPDTRSENYILLSLV-TDPKEKSEMVKKIINQQL-KNRDVXXXXXXXXXXXXXXXXXXXXXXXXGKSINRLIGTYQSLKDLGVTLDERTFMELRDNVSIINKVHTKDRVVPAVTGGGGIDRTV------DPSVPTHELGPDERGEESGIVPVSIHIGVRVPQGMSGVVGKRMKKLYVEKYKLESGWNDFVKRRTLFRGRPITENVYFARDDD 386
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC) HSP 1 Score: 176 bits (446), Expect = 4.300e-50 Identity = 106/213 (49.77%), Postives = 139/213 (65.26%), Query Frame = 3
Query: 117 LGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGG-----SPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSAT 740
L L FP+L IT +LRINGKG TPVADAK LV++V L+PG+ A +FRRKSA VCRLLGGD +LV EIEQR A LQ S +GR + LLG S + +++++ Y+GMP GF +L D+ VAK+VV+ +L ++Q L+ R+RC DMVD+ SL DIGV+LD +T +IRDN+SLLTK DLA+EG+ T
Sbjct: 43 LRRLTTRFPDLCVDIT-RLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILLGDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAKEVVKQALDCKKQALK--------------RRRCEDMVDQCKSLSDIGVDLDNQTKKDIRDNLSLLTKGDLALEGSQET 240
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: Q6XLT7_9PHYC (FirrV-1-L1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT7_9PHYC) HSP 1 Score: 163 bits (412), Expect = 1.770e-43 Identity = 121/293 (41.30%), Postives = 161/293 (54.95%), Query Frame = 3
Query: 171 LRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYL-----GTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTK---RDL---AIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
+ ING+G TPVAD TLVEI++LIPG R FR SA + R LGGD EI + +LQ +++GR + F+L P+ + A VE+ G C L +R + K+++E V +Q+XXXXXXXXXXXX EL RDNV+++ K +D A+ G+ + + DP PTH LG ++RG E+GIV V+ +GVRVP GMSG +GK K LY KY L + W+DFIKR+TLF GRPI EN YY RD+D
Sbjct: 96 ITINGRGNTTPVADVATLVEIIWLIPGSAVRQFRAHSAEALVRALGGDLAHAREIAEHHIKLQETSEGREFQDFML---PDRKK--ARVESVPGTCSETCILLGLVTDPKERSEMVKKLLETK------VKDQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEL--------RDNVAIMNKVHTKDRVVPAVTGSGSIDRIV-----DPSVPTHELGPDERGEESGIVPVSIDIGVRVPQGMSGVVGKRMKKLYVAKYKLESGWNDFIKRRTLFRGRPISENVYYARDDD 364
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.360e-39 Identity = 109/302 (36.09%), Postives = 150/302 (49.67%), Query Frame = 3
Query: 123 HLKRDFPELGNLI---TTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDM-VDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
+ KR ++G I TQLRINGKGKLT ADAKTLVEIV+ +PGK AR+FRR SA VCR+LGGD ++V E+E R LQ++ GRA + FLLG E AE +G R+ + ++LS +R+ + ++ C++ VD Y LR +G D R I D V + G A+ DP PT RG E + V++K +R+ G G++G+ K+LY K+Y A +KR FHG+ EN Y+ RDED
Sbjct: 39 YCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLART------IGEVMRRNNKQAELDLSRMRDNASI-------------ATKKACAEFAVDSYEMLRSMGAA-DDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPA--DDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAA-AKMVKRNVPFHGQIYGENTYWARDED 317 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig111.1500.1 >prot_C-linearis_contig111.1500.1 ID=prot_C-linearis_contig111.1500.1|Name=mRNA_C-linearis_contig111.1500.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp MPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQKQALESQKQDLKRQRback to top mRNA from alignment at C-linearis_contig111:355065..356080+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig111.1500.1 ID=mRNA_C-linearis_contig111.1500.1|Name=mRNA_C-linearis_contig111.1500.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1016bp|location=Sequence derived from alignment at C-linearis_contig111:355065..356080+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig111:355065..356080+ >mRNA_C-linearis_contig111.1500.1 ID=mRNA_C-linearis_contig111.1500.1|Name=mRNA_C-linearis_contig111.1500.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig111:355065..356080+ (Chordaria linearis ClinC8C monoicous)back to top |