mRNA_C-linearis_contig111.1500.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1500.1
Unique NamemRNA_C-linearis_contig111.1500.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 335 bits (860), Expect = 2.690e-111
Identity = 178/313 (56.87%), Postives = 219/313 (69.97%), Query Frame = 3
Query:   78 CDKDGAPVQLKYLLGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            CD   A    + L   + +   E G    + LRINGKG+LTPVA+AKTLVEI+F +PGK+AR+FRRKSA+++CRLLGGD TLV EIEQRRA+L+++  GR T++FLLG S    +     + + GMP+GF YL    R+ VA +VV L+L                      RQR  DM+  Y SLR +GVELDPRTM+EIRDNVSLLTKR L+IE    + T +     DPKTPTHVLG+E+RG+E+GIVVVA+KMGVRVP  MSG IGKL K LYKKKYDLP DW+DF+KRQTL+ GRP+MENCYYERDED
Sbjct:   34 CDASSANTAFRRLKDDMLKSRAEFG-AACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTD-----DDFTGMPVGFRYLEESQRRAVAGEVVALAL---------------------KRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLSIEEREDSTTRLV----DPKTPTHVLGREERGNESGIVVVASKMGVRVPPSMSGPIGKLMKILYKKKYDLPNDWNDFVKRQTLYLGRPVMENCYYERDED 315          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC)

HSP 1 Score: 325 bits (833), Expect = 6.630e-107
Identity = 193/318 (60.69%), Postives = 225/318 (70.75%), Query Frame = 3
Query:   78 CDKDGAPVQLKYLLGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLG-GSPESIEG----TAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            C    A   L     +LK  F +LGN I    +INGKGK TPVADAKTLVEI+FL+PG+ A  FRRKSA KVCRL+GGD +LV EIEQR   L+++ +GRAT++FLL  GS E+       +A+++ Y+GMP GF +L   D+  VAK+VV+       Q L+ + XXXXXXXXXX RQRC DMV RY +L DIGV+LD RT IEIRDNVSLLTKRDLA+EG+  T         DP TPTH L   +RGHE GIVVVAAKMGVRVP  MSG+IGKL K LYKKKY L  DWDDF KRQTLFHGRPI ENCYY RDED
Sbjct:   34 CSSSAANTNLS----NLKTRFSDLGNNIA-HAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQRCTALESTPEGRATQAFLLNPGSSENSSSAPCASAQLKKYEGMPAGFSFLDPSDQCKVAKEVVQ-------QALDGRKXXXXXXXXXXKRQRCEDMVGRYKTLMDIGVKLDDRTKIEIRDNVSLLTKRDLALEGSQDTEICAPI---DPTTPTHTLCAGERGHETGIVVVAAKMGVRVPPAMSGAIGKLMKKLYKKKYGLSVDWDDFPKRQTLFHGRPINENCYYARDED 336          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 3.640e-86
Identity = 147/313 (46.96%), Postives = 199/313 (63.58%), Query Frame = 3
Query:   78 CDKDGAPVQLKYLLGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            CD   A        G L +  PELG+  T   ++NGKG  TPVADAKTL+EIV+L+PGK A  FRR+S+ KVCRLLGGD +LV+EIE R A LQ++  GR T+ FLL G  E++E       + GMP GF YL   DR  VAK++++  L    Q L+              R+R  D+V  Y +++DIGV LD RT+IE+RD+V++L++++   +   A  T + Q   D  T TH L   QRG E GIVVV++K+G+RVP  + G +GKL + LY KKY LP +W+ F+KRQTL +GRP+MENC++ RDED
Sbjct:   33 CDSSNANTAF----GRLLQAHPELGSRCTRS-KLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGREEAVE------TFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQALK--------------RKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVEDDAVAVATPLLQ---DSNTSTHELASAQRGKETGIVVVSSKIGIRVPQNLCGKVGKLMRQLYIKKYALPGNWNAFVKRQTLINGRPVMENCFFSRDED 317          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 2.430e-83
Identity = 152/291 (52.23%), Postives = 201/291 (69.07%), Query Frame = 3
Query:  144 ELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            ELG   T QLRINGKGK TPVADAKTL+EIV+L+PGK AR+FRR+S+ KVCRLLGGD +LV+EIE R A LQ++  GRAT+ FLLG   E++E       + GMP GF YL   DR   AKQ++EL+L   +  L+              R+R  DMV  Y +L+D+GV LD RT+IE+RDNV++L+++D+ +    A    +     D  TPTH LG +QRG E GIVVV++K+G+RVP  MSG++GK+ K +Y +KY+L  D+  F +RQTLF+GRPI+EN Y+ERDED
Sbjct:  948 ELGTRCT-QLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAVE------TFDGMPAGFRYLPVEDRAQFAKQMLELNLEMSKVALK--------------RKRVDDMVQSYRALQDLGVLLDGRTLIELRDNVTILSRQDVMVNNAVAIAAPLLH---DSTTPTHELGADQRGKETGIVVVSSKIGIRVPQNMSGTVGKMMKQMYIRKYELAPDFSGFARRQTLFNGRPILENLYFERDED 1214          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: Q6XM54_9PHYC (FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM54_9PHYC)

HSP 1 Score: 224 bits (570), Expect = 5.370e-66
Identity = 124/286 (43.36%), Postives = 182/286 (63.64%), Query Frame = 3
Query:  168 QLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLV---RERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            +++ING+G++TPVADAKTL+ I++L+PG+    FR +SA  + R+LGGD  L  EI+Q+ A+LQ + +GRA + F+   +P++ +   ++         F +LG   R  +A+Q     L    +ERQ  EQ+            ++  +D++D Y SL++I VE+D RT +EIRD VS+LT++   +EG  +  +    + +DP TPTHVL  E+RG E  IVVV+AKM VRVP  +SG +GKL +  Y  KY LP +W+DFIKRQT+ HGRP +EN YYERD D
Sbjct:  185 KIQINGRGRVTPVADAKTLIYIIWLLPGRAVAHFRAQSAEIIARVLGGDLRLAQEIQQQCAKLQETPEGRAFQDFM---APDAKKQKMDM---------FEFLGPSKRVEIAEQFYAEKLKAIQQERQAKEQELK----------KKSITDIIDVYQSLKNIDVEIDDRTKVEIRDKVSILTRQ---MEGQGSHASPPLLLCEDPSTPTHVLDAERRGQETNIVVVSAKMNVRVPPALSGKVGKLMRKKYINKYKLPTNWNDFIKRQTILHGRPCLENTYYERDAD 445          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: UPI0000161E55 (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E55)

HSP 1 Score: 189 bits (481), Expect = 1.590e-55
Identity = 106/233 (45.49%), Postives = 149/233 (63.95%), Query Frame = 3
Query:  318 TLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            +LV+EIE R   LQ++ +GRAT+SFLL G  E +E    +++++GMP  F Y+   DR  +AK+++E  L      L+              RQR  +++  Y SLRDIGV LD RT+IE+ DNV++L+++DL +     T T + Q   D  TPTH L   QRG E GIVVV+AK+G+RVP  + G++GKL K LY KKY L +++  FIKR+T+F+GRP +EN YY RDED
Sbjct:    2 SLVSEIEARHNSLQSTEEGRATQSFLLDGR-EEVEA---IDSFEGMPPAFKYIDAKDRGDLAKRMIEQQLQESTVALK--------------RQRVDNLIQSYKSLRDIGVNLDGRTLIELCDNVTILSRQDLVVSDAVPTPTPLLQ---DSSTPTHELDAAQRGRETGIVVVSAKIGLRVPQHLCGTVGKLMKKLYIKKYRLSSNFKAFIKRETIFNGRPGLENTYYARDED 213          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: Q6XLT8_9PHYC (FirrV-1-K1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT8_9PHYC)

HSP 1 Score: 187 bits (475), Expect = 1.600e-52
Identity = 125/298 (41.95%), Postives = 174/298 (58.39%), Query Frame = 3
Query:  171 LRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPES-IEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXR--------QRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTK---RDLAIE----GTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            ++INGKG  TPVAD  TLVEI++LIPG   R FR  SA  + R LGGD     EI +   +LQ + +GR  + F+L    ++ +E   +  +   + L        ++  + K+++   L + R V    XXXXXXXXXXXX         +  + ++  Y SL+D+GV LD RT +E+RDNVS++ K   +D  +     G    RT       DP  PTH LG ++RG E+GIV V+  +GVRVP GMSG +GK  K LY +KY L + W+DF+KR+TLF GRPI EN Y+ RD+D
Sbjct:   97 IKINGKGHTTPVADVATLVEIIWLIPGSAVRQFRAHSAEALVRALGGDLAHAREIAEHHIKLQETPEGREFQDFMLPDRKKARVESVPDTRSENYILLSLV-TDPKEKSEMVKKIINQQL-KNRDVXXXXXXXXXXXXXXXXXXXXXXXXGKSINRLIGTYQSLKDLGVTLDERTFMELRDNVSIINKVHTKDRVVPAVTGGGGIDRTV------DPSVPTHELGPDERGEESGIVPVSIHIGVRVPQGMSGVVGKRMKKLYVEKYKLESGWNDFVKRRTLFRGRPITENVYFARDDD 386          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC)

HSP 1 Score: 176 bits (446), Expect = 4.300e-50
Identity = 106/213 (49.77%), Postives = 139/213 (65.26%), Query Frame = 3
Query:  117 LGHLKRDFPELGNLITTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGG-----SPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSAT 740
            L  L   FP+L   IT +LRINGKG  TPVADAK LV++V L+PG+ A +FRRKSA  VCRLLGGD +LV EIEQR A LQ S +GR  +  LLG      S  +   +++++ Y+GMP GF +L   D+  VAK+VV+ +L  ++Q L+              R+RC DMVD+  SL DIGV+LD +T  +IRDN+SLLTK DLA+EG+  T
Sbjct:   43 LRRLTTRFPDLCVDIT-RLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILLGDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAKEVVKQALDCKKQALK--------------RRRCEDMVDQCKSLSDIGVDLDNQTKKDIRDNLSLLTKGDLALEGSQET 240          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: Q6XLT7_9PHYC (FirrV-1-L1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT7_9PHYC)

HSP 1 Score: 163 bits (412), Expect = 1.770e-43
Identity = 121/293 (41.30%), Postives = 161/293 (54.95%), Query Frame = 3
Query:  171 LRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYL-----GTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTK---RDL---AIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            + ING+G  TPVAD  TLVEI++LIPG   R FR  SA  + R LGGD     EI +   +LQ +++GR  + F+L   P+  +  A VE+  G     C L        +R  + K+++E        V +Q+XXXXXXXXXXXX                   EL        RDNV+++ K   +D    A+ G+ +    +     DP  PTH LG ++RG E+GIV V+  +GVRVP GMSG +GK  K LY  KY L + W+DFIKR+TLF GRPI EN YY RD+D
Sbjct:   96 ITINGRGNTTPVADVATLVEIIWLIPGSAVRQFRAHSAEALVRALGGDLAHAREIAEHHIKLQETSEGREFQDFML---PDRKK--ARVESVPGTCSETCILLGLVTDPKERSEMVKKLLETK------VKDQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEL--------RDNVAIMNKVHTKDRVVPAVTGSGSIDRIV-----DPSVPTHELGPDERGEESGIVPVSIDIGVRVPQGMSGVVGKRMKKLYVAKYKLESGWNDFIKRRTLFRGRPISENVYYARDDD 364          
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.360e-39
Identity = 109/302 (36.09%), Postives = 150/302 (49.67%), Query Frame = 3
Query:  123 HLKRDFPELGNLI---TTQLRINGKGKLTPVADAKTLVEIVFLIPGKIARDFRRKSAAKVCRLLGGDSTLVTEIEQRRAQLQNSADGRATRSFLLGGSPESIEGTAEVEAYQGMPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQXXXXXXXXXXXXRQRCSDM-VDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAITQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKSLYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED 1016
            + KR   ++G  I    TQLRINGKGKLT  ADAKTLVEIV+ +PGK AR+FRR SA  VCR+LGGD ++V E+E R   LQ++  GRA + FLLG      E  AE             +G   R+   +  ++LS +R+   +               ++ C++  VD Y  LR +G   D R  I   D V  +        G      A+     DP  PT       RG E  +  V++K  +R+  G  G++G+  K+LY K+Y   A     +KR   FHG+   EN Y+ RDED
Sbjct:   39 YCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLART------IGEVMRRNNKQAELDLSRMRDNASI-------------ATKKACAEFAVDSYEMLRSMGAA-DDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPA--DDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAA-AKMVKRNVPFHGQIYGENTYWARDED 317          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWM3_9PHYC2.690e-11156.87Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWG1_9PHYC6.630e-10760.69Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D8LP49_ECTSI3.640e-8646.96EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JW74_9PHAE2.430e-8352.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XM54_9PHYC5.370e-6643.36FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a... [more]
UPI0000161E551.590e-5545.49EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
Q6XLT8_9PHYC1.600e-5241.95FirrV-1-K1 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LWF8_9PHYC4.300e-5049.77Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLT7_9PHYC1.770e-4341.30FirrV-1-L1 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A835YWG0_9STRA1.360e-3936.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:355065..356080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue5.8e-39
Seed eggNOG ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1016
Cds size564
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927484.108134-UTR-C-linearis_contig111:355064..3555161622927484.108134-UTR-C-linearis_contig111:355064..355516Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 355065..355516 +
1690879727.4566567-UTR-C-linearis_contig111:355064..3555161690879727.4566567-UTR-C-linearis_contig111:355064..355516Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 355065..355516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927484.2100935-CDS-C-linearis_contig111:355516..3560801622927484.2100935-CDS-C-linearis_contig111:355516..356080Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 355517..356080 +
1690879727.4683084-CDS-C-linearis_contig111:355516..3560801690879727.4683084-CDS-C-linearis_contig111:355516..356080Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 355517..356080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1500.1prot_C-linearis_contig111.1500.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 355517..356080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1500.1

>prot_C-linearis_contig111.1500.1 ID=prot_C-linearis_contig111.1500.1|Name=mRNA_C-linearis_contig111.1500.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp
MPLGFCYLGTGDRQVVAKQVVELSLVRERQVLEQQKQALESQKQDLKRQR
CSDMVDRYTSLRDIGVELDPRTMIEIRDNVSLLTKRDLAIEGTSATRTAI
TQMRQDPKTPTHVLGQEQRGHENGIVVVAAKMGVRVPAGMSGSIGKLTKS
LYKKKYDLPADWDDFIKRQTLFHGRPIMENCYYERDED
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mRNA from alignment at C-linearis_contig111:355065..356080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1500.1 ID=mRNA_C-linearis_contig111.1500.1|Name=mRNA_C-linearis_contig111.1500.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1016bp|location=Sequence derived from alignment at C-linearis_contig111:355065..356080+ (Chordaria linearis ClinC8C monoicous)
ATGGACACCATCACCGAATCCATGGAGAATTCCACCATTCGCGTAGACAC GGCCACTCTACAAGGAAGTCTCATTGATGTGATAAGGATGGTGCTCCAGT GCAACTCAAGTACTTACTTGGGCACCTCAAGCGTGATTTCCCCGAGTTGG GTAATCTGATTACTACCCAACTCCGCATCAACGGAAAAGGCAAGCTTACC CCCGTGGCGGACGCGAAAACTTTGGTGGAGATCGTCTTTCTTATCCCCGG TAAAATAGCGCGTGACTTCCGCCGCAAGAGCGCTGCTAAGGTGTGCCGTC TTTTGGGTGGAGATTCCACTCTGGTCACCGAGATCGAGCAACGTCGTGCG CAGCTTCAAAACAGTGCCGACGGTCGCGCCACGCGGTCTTTTCTCTTGGG AGGAAGTCCGGAGAGCATTGAAGGTACTGCTGAAGTCGAGGCCTACCAAG GAATGCCACTGGGATTCTGTTACCTTGGTACTGGTGACCGCCAAGTGGTC GCGAAGCAAGTCGTCGAGCTTTCCCTTGTACGAGAACGCCAAGTCCTCGA ACAACAAAAGCAAGCTCTTGAATCCCAAAAGCAAGACCTCAAACGCCAAA GGTGCTCGGACATGGTCGATAGGTACACGTCTCTACGCGACATCGGGGTT GAGCTCGATCCGCGCACCATGATTGAGATAAGGGATAATGTTTCTCTGCT TACCAAGAGAGACCTTGCCATCGAGGGAACAAGCGCAACAAGAACGGCAA TCACACAAATGAGACAAGACCCGAAGACGCCCACCCACGTGCTTGGTCAG GAACAACGAGGGCACGAGAATGGGATTGTTGTCGTTGCCGCGAAGATGGG GGTACGCGTTCCCGCGGGAATGTCTGGGTCGATCGGAAAGCTCACGAAGA GTTTGTACAAGAAGAAGTATGATCTGCCGGCCGACTGGGACGACTTCATC AAGCGCCAGACGCTTTTTCACGGCCGACCGATAATGGAAAACTGTTACTA CGAGCGCGATGAAGAT
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Coding sequence (CDS) from alignment at C-linearis_contig111:355065..356080+

>mRNA_C-linearis_contig111.1500.1 ID=mRNA_C-linearis_contig111.1500.1|Name=mRNA_C-linearis_contig111.1500.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig111:355065..356080+ (Chordaria linearis ClinC8C monoicous)
ATGCCACTGGGATTCTGTTACCTTGGTACTGGTGACCGCCAAGTGGTCGC
GAAGCAAGTCGTCGAGCTTTCCCTTGTACGAGAACGCCAAGTCCTCGAAC
AACAAAAGCAAGCTCTTGAATCCCAAAAGCAAGACCTCAAACGCCAAAGG
TGCTCGGACATGGTCGATAGGTACACGTCTCTACGCGACATCGGGGTTGA
GCTCGATCCGCGCACCATGATTGAGATAAGGGATAATGTTTCTCTGCTTA
CCAAGAGAGACCTTGCCATCGAGGGAACAAGCGCAACAAGAACGGCAATC
ACACAAATGAGACAAGACCCGAAGACGCCCACCCACGTGCTTGGTCAGGA
ACAACGAGGGCACGAGAATGGGATTGTTGTCGTTGCCGCGAAGATGGGGG
TACGCGTTCCCGCGGGAATGTCTGGGTCGATCGGAAAGCTCACGAAGAGT
TTGTACAAGAAGAAGTATGATCTGCCGGCCGACTGGGACGACTTCATCAA
GCGCCAGACGCTTTTTCACGGCCGACCGATAATGGAAAACTGTTACTACG
AGCGCGATGAAGATATGCCACTGGGATTCTGTTACCTTGGTACTGGTGAC
CGCCAAGTGGTCGCGAAGCAAGTCGTCGAGCTTTCCCTTGTACGAGAACG
CCAAGTCCTCGAACAACAAAAGCAAGCTCTTGAATCCCAAAAGCAAGACC
TCAAACGCCAAAGGTGCTCGGACATGGTCGATAGGTACACGTCTCTACGC
GACATCGGGGTTGAGCTCGATCCGCGCACCATGATTGAGATAAGGGATAA
TGTTTCTCTGCTTACCAAGAGAGACCTTGCCATCGAGGGAACAAGCGCAA
CAAGAACGGCAATCACACAAATGAGACAAGACCCGAAGACGCCCACCCAC
GTGCTTGGTCAGGAACAACGAGGGCACGAGAATGGGATTGTTGTCGTTGC
CGCGAAGATGGGGGTACGCGTTCCCGCGGGAATGTCTGGGTCGATCGGAA
AGCTCACGAAGAGTTTGTACAAGAAGAAGTATGATCTGCCGGCCGACTGG
GACGACTTCATCAAGCGCCAGACGCTTTTTCACGGCCGACCGATAATGGA
AAACTGTTACTACGAGCGCGATGAAGAT
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