mRNA_C-linearis_contig111.1499.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1499.1
Unique NamemRNA_C-linearis_contig111.1499.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig111.1499.1 vs. uniprot
Match: A0A6C0F7L2_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F7L2_9ZZZZ)

HSP 1 Score: 63.9 bits (154), Expect = 8.900e-12
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 MSLILEAVVVGV-VLVFATYWS--VALTKRVVPSPEGNFNKYHVMEISIFIAGVLTHLFFEKVGLNKAYCTSGHAC 219
            M L++EAVVVGV V++  T  S  ++L     PS + ++NK HVMEI++F  GVL HLF E +G+NK YC +G+AC
Sbjct:    1 MKLMIEAVVVGVLVVIMGTLVSNVISLLGGSKPSSK-DWNKNHVMEIALFFTGVLVHLFCEVLGINKWYCKNGNAC 75
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BLAST of mRNA_C-linearis_contig111.1499.1 vs. uniprot
Match: A0A2D9NRI2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D9NRI2_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.220e-9
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 MSLILEAVVVGVVLVFA---TYWSVA-LTKRVVPSPEGNFNKYHVMEISIFIAGVLTHLFFEKVGLNKAYCTSGHAC 219
            M L++EA VVG+VLV     T + V   TK  +P    ++NK + ME S+F  G ++HL FE  G+NK YC +G AC
Sbjct:    1 MDLLIEASVVGIVLVIVGTGTAFVVGTFTKTDLPPACKDWNKNYAMEFSLFFTGFVSHLLFEVTGINKYYCKNGVAC 77
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BLAST of mRNA_C-linearis_contig111.1499.1 vs. uniprot
Match: A0A6C0AG44_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AG44_9ZZZZ)

HSP 1 Score: 55.5 bits (132), Expect = 2.190e-8
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    4 SLILEAVVVGVVLVFATYWSVALTKRVVPSPE-----GNFNKYHVMEISIFIAGVLTHLFFEKVGLNKAYCTSGHACL 222
             L++EA+ VG+ L+        L  +    PE      N+NKYH+ME+++F+ G L H+ FE  GLNK Y  +G + L
Sbjct:    6 QLLIEAIFVGISLILVGNVVGFLVGKYYIKPELPIECANYNKYHIMEVTLFLTGFLLHILFEISGLNKFYIKNGASAL 83
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BLAST of mRNA_C-linearis_contig111.1499.1 vs. uniprot
Match: Q8QKW5_ESV1K (EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K)

HSP 1 Score: 52.0 bits (123), Expect = 4.080e-7
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    7 LILEAVVVGVVLVFATYWSVALTKRVVPSPEGNFNKYHVMEISIFIAGVLTHLFFEKVGLNKAYCTSGHAC 219
            L++EAVVVGVV++ A Y    L  +++P    +     VM +S+F+ G+ +HL FE + +N  YC+ G AC
Sbjct:    4 LVIEAVVVGVVMMLAGYPCGLLASKLLPMKGDDHRP--VMYLSLFLTGLSSHLLFEVLKINLWYCSKGFAC 72
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6C0F7L2_9ZZZZ8.900e-1250.00Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A2D9NRI2_9BACT1.220e-944.16Uncharacterized protein n=1 Tax=Candidatus Marinim... [more]
A0A6C0AG44_9ZZZZ2.190e-837.18Uncharacterized protein n=1 Tax=viral metagenome T... [more]
Q8QKW5_ESV1K4.080e-739.44EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:349649..349879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927484.0715764-CDS-C-linearis_contig111:349648..3498791622927484.0715764-CDS-C-linearis_contig111:349648..349879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 349649..349879 -
1690879727.4447777-CDS-C-linearis_contig111:349648..3498791690879727.4447777-CDS-C-linearis_contig111:349648..349879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 349649..349879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1499.1prot_C-linearis_contig111.1499.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 349649..349879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1499.1

>prot_C-linearis_contig111.1499.1 ID=prot_C-linearis_contig111.1499.1|Name=mRNA_C-linearis_contig111.1499.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp
MSLILEAVVVGVVLVFATYWSVALTKRVVPSPEGNFNKYHVMEISIFIAG
VLTHLFFEKVGLNKAYCTSGHACLQP*
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mRNA from alignment at C-linearis_contig111:349649..349879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1499.1 ID=mRNA_C-linearis_contig111.1499.1|Name=mRNA_C-linearis_contig111.1499.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at C-linearis_contig111:349649..349879- (Chordaria linearis ClinC8C monoicous)
ATGAGTCTCATTTTGGAAGCTGTTGTGGTTGGAGTTGTTCTGGTATTCGC
GACGTACTGGTCGGTTGCCTTGACGAAAAGGGTCGTTCCCTCTCCCGAGG
GAAACTTCAACAAGTATCACGTGATGGAGATAAGCATATTCATTGCTGGG
GTCCTCACCCACCTCTTTTTCGAAAAGGTGGGTTTGAACAAAGCTTACTG
TACTTCAGGCCACGCTTGCTTACAACCTTAA
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Coding sequence (CDS) from alignment at C-linearis_contig111:349649..349879-

>mRNA_C-linearis_contig111.1499.1 ID=mRNA_C-linearis_contig111.1499.1|Name=mRNA_C-linearis_contig111.1499.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at C-linearis_contig111:349649..349879- (Chordaria linearis ClinC8C monoicous)
ATGAGTCTCATTTTGGAAGCTGTTGTGGTTGGAGTTGTTCTGGTATTCGC
GACGTACTGGTCGGTTGCCTTGACGAAAAGGGTCGTTCCCTCTCCCGAGG
GAAACTTCAACAAGTATCACGTGATGGAGATAAGCATATTCATTGCTGGG
GTCCTCACCCACCTCTTTTTCGAAAAGGTGGGTTTGAACAAAGCTTACTG
TACTTCAGGCCACGCTTGCTTACAACCTTAAATGAGTCTCATTTTGGAAG
CTGTTGTGGTTGGAGTTGTTCTGGTATTCGCGACGTACTGGTCGGTTGCC
TTGACGAAAAGGGTCGTTCCCTCTCCCGAGGGAAACTTCAACAAGTATCA
CGTGATGGAGATAAGCATATTCATTGCTGGGGTCCTCACCCACCTCTTTT
TCGAAAAGGTGGGTTTGAACAAAGCTTACTGTACTTCAGGCCACGCTTGC
TTACAACCTTAA
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