mRNA_C-linearis_contig111.1498.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: UPI00140E428D (gliding motility-associated C-terminal domain-containing protein n=1 Tax=Flavobacterium celericrescens TaxID=2709780 RepID=UPI00140E428D) HSP 1 Score: 79.7 bits (195), Expect = 3.390e-11 Identity = 67/220 (30.45%), Postives = 95/220 (43.18%), Query Frame = 1
Query: 5836 AQTCVNSPLYPESCLYPDCLDPAVVDTEPYATYDAEPPVLSNLPAQDLDTTVHECVSPSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSSTVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRN--VSRTWTAEDECGNSISLTRTATVKSSLCVGGTAAPLLI 6489
A TC NS + D +V D++ D P + D+ EC + VI A +D C VV T+ T G S T+TRTW ATD+ GNS+ + V DT P N + + D A E ++ A+D+C EV + + E C + RTWTA D+C NS S ++T TV TAAP+++
Sbjct: 12 AGTCANSYTLTRTWTATDVCGNSVSDSQVITVQDTTAPTFDMVIPADVTA---ECNAIPTAAVITA-SDNCDSAVSVVFTETTTAGTCANSYTLTRTWTATDVCGNSVSDSQVITVQDTTAPTFTSELPNDISVSCD----AIPEAQTLYAIDSCDN---EVTISMTDTINAENSNCAGQYIIIRTWTATDDCNNSTSFSQTITVSD------TAAPIIV 214
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: A0A7C4JUX0_9BACT (HYR domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C4JUX0_9BACT) HSP 1 Score: 81.3 bits (199), Expect = 3.730e-11 Identity = 66/186 (35.48%), Postives = 92/186 (49.46%), Query Frame = 1
Query: 5902 AVVDTEPYATYDAEPPVLSNLPAQDLDTTVHECVSPSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSS--TVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGED---ASVSAVDACSGLEVEVVYTEESVLGEEGDECVRNVSRTWTAEDECGNSISLTRTATV 6444
A+ T+ D PP+L NLP+ + T V P+ +V +DN +G + V TL G D CS T+TR W ATD GN+ Q +T V D VPP + + + +Q GED A+V+A D C G + V E++L G + RTWTA D+CGNSI T+ T+
Sbjct: 2505 AITHTQNILVNDVTPPILQNLPSPVVTVTCSNLV-PAVANVTASDN---CQGTVYVDFSETLSGFD-CSDRYTLTRKWVATDFAGNTTQFIQTINVNDNVPPTWTSMLPSDVTVQC-------GEDVQPANVTASDNCGGPVL--VEANETLLPGAGPNDGVVLVRTWTAYDDCGNSIQHTQRVTI 2676
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: UPI00141FE96D (choice-of-anchor J domain-containing protein n=1 Tax=Paraflavitalea devenefica TaxID=2716334 RepID=UPI00141FE96D) HSP 1 Score: 80.9 bits (198), Expect = 4.940e-11 Identity = 73/207 (35.27%), Postives = 98/207 (47.34%), Query Frame = 1
Query: 5905 VVDTEPYATYDAEPPVLSNLPAQDLDTTVHECVSPSQHHVIVADN-DPCFEGGLVVPTDATLPGADTCSSTVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRNVSRTWTAEDECGNSISLTRTATVKSSLCVGGTAAPL-------LIPTAA 6501
V T+ D PPVLS +PA D TV P+ V DN DP + V T D C T+TR W ATD GN++ +T V D +PP+L+G+PA+ V P A +V+A D C V V + E + + D C ++RTWTA D CGN+++ T+T TV + T P IPTAA
Sbjct: 4378 VTATQILTVVDNTPPVLSGVPA---DATVQCGAIPTPATVTATDNCDPT----VPVTFAETSTVVDGCG-TITRIWTATDACGNTVTTTQTLTVQDNIPPVLSGVPADATVQCGSIPAAA-----TVTATDNCDPT-VPVTFNEVNGVT---DGC-GTITRTWTATDACGNTVTATQTLTVVDNTPPALTGVPADATVQCGSIPTAA 4566
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: A0A383W206_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W206_TETOB) HSP 1 Score: 79.7 bits (195), Expect = 9.860e-11 Identity = 102/362 (28.18%), Postives = 133/362 (36.74%), Query Frame = 1
Query: 5161 LVDFEHPELASLTCEELLTRFIVDPTDAIL-EVGDGFCNGGIW-NTPQCNYDGGDCCSGTCTPVSLSEVTSSRASTADDCLADSIGDGFCDFDNNNAVXXXXXXXXXXXXXXXGSGGQCDEGTFDCRDGSEPPSEDTEARAQSCGSRTMQCLDPAAEEQPPAGCSDVRKARALFLAESPAGEERRRLQNETPPTEEDCGSPVTQWGDGVCDARLNTGACNYDGGDCCAQTCVNSPLYPESCLY---PDCLDPAVVDTEPYATYDAEPPVLS-------NLPAQDLDTTVHECVSPSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSS-TVTRTWAATDLNGNSIQAQRTYQVADTVPPIL 6207
L FE E SL EEL +V L EVG+ FC+ W N+P CNYDGGDCC TC P L E SS N+ + C F C D S + T+A G+ P DV + + R +L + T + GVCD RLN A N+DGGDCCA +C +P P SC + CLDP + E D +PPV++ + + TT +++A L V LP A T TV+ TW A D N+ A +T V PP+L
Sbjct: 1400 LKSFEPDEPCSLLGEELAQLGLVANASTFLAEVGNSFCSPSPWLNSPACNYDGGDCCPSTCQP--LCEQVSSA---------------------NDTIGTLATYVTLSW--------SCSR--FQCSDPSAQANS-TKASVNCTGTAVSSPNSLLQRLLLPVVAGDVVDVKEVLQRVG-----RAKLVSATGTS-------------GVCDPRLNNEANNWDGGDCCADSCKPNPAIPGSCEFIPAAACLDPTYSNPE-QPPEDVQPPVITAPADYTTSCRSTIFSTTALTAYDKVDGIIVLAAPTISSSNSLPVSLTEPLPCASTDEVYTVSLTWTAKDSANNTATAVQTIYVLPP-PPVL 1707
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: UPI001422ABEA (hypothetical protein n=1 Tax=Paraflavitalea devenefica TaxID=2716334 RepID=UPI001422ABEA) HSP 1 Score: 79.7 bits (195), Expect = 1.030e-10 Identity = 64/180 (35.56%), Postives = 88/180 (48.89%), Query Frame = 1
Query: 5905 VVDTEPYATYDAEPPVLSNLPAQDLDTTVHECVSPSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSSTVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRNVSRTWTAEDECGNSISLTRTATV 6444
V T+ + D PPVLS +PA D TV P+ V +DN + + V T D C T+TR W ATD GN+ A +T V D PP+L+G+PA+ V P A +V+A D C V + E + D C ++RTWTA D CGN+++ T+T TV
Sbjct: 153 VTATQTFTVVDNTPPVLSGVPA---DATVQCGSVPAAATVTASDN---CDPNVPVTLTETSTVVDGCG-TITRIWTATDACGNTATAMQTLTVTDNEPPVLSGVPADATVQCGSIPAAA-----TVTAADNCDPT-APVTFNEVISVT---DGC-GTITRTWTATDACGNTVTATQTLTV 315
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: UPI0019E3CCC6 (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=UPI0019E3CCC6) HSP 1 Score: 74.7 bits (182), Expect = 2.170e-9 Identity = 75/239 (31.38%), Postives = 110/239 (46.03%), Query Frame = 1
Query: 5770 GDGVCDARLN-TGACNYDGGDCCAQTCVNSPLYPESCLYPDCLDPAVVDTEPYATYDAEPPVLSNLPAQDLDTTVHECVS----PSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSS--TVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRNVSRTWTAEDECGNSISLTRTATVKSSLCVG 6465
GDG+CD T A +GG C+ TC + +Y ++DT PV+ ++P D+ +C S S + V DN C G LVV ++ C + T+TRTW ATD GN A + V D++PP+L +PA+ V D L A+V+A+D+C G V T V+ + ++RTWTA D CGN++S ++ V SL G
Sbjct: 450 GDGICDTTFTLTLAVTNEGG--CSSTC-SMTVY-------------MIDTVS--------PVIMDVP----DSLFLQCASGVPVASPDSITVTDN--CV-GSLVVTVTDSITNDTVCPNQFTLTRTWTATDTCGNFATATQIITVFDSIPPVLYDVPADTGVCCADSIPLP----ANVTAIDSCDGP---VGVTLIEVVSDSTSPFYFTLTRTWTASDTCGNTVSDSQIIIVNDSLYGG 650
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: UPI001668A370 (hypothetical protein n=1 Tax=Flavobacterium orientale TaxID=1756020 RepID=UPI001668A370) HSP 1 Score: 73.6 bits (179), Expect = 5.510e-9 Identity = 49/138 (35.51%), Postives = 73/138 (52.90%), Query Frame = 1
Query: 6088 PGADTCSST--VTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRN--VSRTWTAEDECGNSISLTRTATVKSSLCVGGTAAPLLI 6489
P C+S + R W +D GNS++ +T Q+ D+ PP+ G + +Q D A A+++A D C VEVVYTE G+ C+ + ++RTWTA D CGNS+S +T TV+ TAAP+ +
Sbjct: 412 PAVGECASNQLIIRHWTVSDSCGNSVEFDQTIQIIDSTPPVFVGDLPQDITVQCD----AIPAAATLTATDNCGN--VEVVYTESVEAGQ----CLGSSVITRTWTATDTCGNSVSHVQTITVED------TAAPVFV 533
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: A0A327QTG1_9BACT (Gliding motility-associated-like protein n=1 Tax=Chitinophaga skermanii TaxID=331697 RepID=A0A327QTG1_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 1.820e-8 Identity = 62/172 (36.05%), Postives = 81/172 (47.09%), Query Frame = 1
Query: 5935 DAEPPVLSNLPAQDLDTTVHECVSPSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSSTVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRN--VSRTWTAEDECGNSISLTRTATV 6444
D PPV+ LPA+ T E V P DN G + D A T+TR W A D GN A + +V DT+PP+L G+PAN V + PN+A +A D C L V V Y ++V G C ++RTWTA DEC NS+S ++ TV
Sbjct: 3492 DTVPPVIMGLPAEI--TASCENV-PGFTTPTATDN---CSGAKLTFRDTKTTTACPGEYTLTREWTAVDSCGNRTIASQVIKVIDTIPPVLTGIPANVTVECNNIPNVAVP-----TATDNC--LAVTVTYRADTVRGN----CAGRYEITRTWTATDECNNSVSRSQVITV 3646
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: UPI001FCA721A (gliding motility-associated C-terminal domain-containing protein n=1 Tax=Flavobacterium enshiense TaxID=1341165 RepID=UPI001FCA721A) HSP 1 Score: 71.6 bits (174), Expect = 2.560e-8 Identity = 59/175 (33.71%), Postives = 82/175 (46.86%), Query Frame = 1
Query: 5935 DAEPPVLSNLPAQDLDTTVHECVSPSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSSTVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRN--VSRTWTAEDECGNSISLTRTATVKSS 6453
D PPV S LP + TT+ +C Q A +D C + D T PG S +VTRTW A D GN A +T V DT PP+ LP + T P A A D CS L + + + + + G+ C + ++RTWTAED CGN + ++T V+ +
Sbjct: 840 DTTPPVFSALPGE---TTI-DCKQQVQFSQAQATDD-CSLPIALTHVDVTTPGQCPGSYSVTRTWTAKDACGNPSTATQTINVQDTTPPVFEALPEVSSIDCTATPVFA-----QAVATDNCS-LPIALTHADVTAPGQ----CPGSYSITRTWTAEDACGNKSTASQTINVQDT 999
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Match: UPI001FCC220A (gliding motility-associated C-terminal domain-containing protein n=1 Tax=Flavobacterium enshiense TaxID=1341165 RepID=UPI001FCC220A) HSP 1 Score: 71.2 bits (173), Expect = 3.660e-8 Identity = 57/173 (32.95%), Postives = 81/173 (46.82%), Query Frame = 1
Query: 5935 DAEPPVLSNLPAQDLDTTVHECVSPSQHHVIVADNDPCFEGGLVVPTDATLPGADTCSSTVTRTWAATDLNGNSIQAQRTYQVADTVPPILAGLPANGLVIQTDDPNLAFGEDASVSAVDACSGLEVEVVYTEESVLGEEGDECVRN--VSRTWTAEDECGNSISLTRTATVK 6447
D PPV+S LPA T+ +C + Q A D C + D T PG S +VTRTW A D+ GNS +T V D P++A LPA + P A +A D C + + + + + G+ C + V+RTWTA D CGNS + ++T V+
Sbjct: 1078 DTTPPVISPLPA----TSTIDCPAVPQFAQATA-TDNCGSAFTLTFNDVTTPGQCAGSYSVTRTWTARDVCGNSSTKTQTINVQDVTAPVIADLPAASTINCPAVPQFA-----QATATDNCGSV-FTLTFKDVTTPGQ----CAGSYSVTRTWTARDACGNSSTKSQTINVQ 1235 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig111.1498.1 >prot_C-linearis_contig111.1498.1 ID=prot_C-linearis_contig111.1498.1|Name=mRNA_C-linearis_contig111.1498.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2245bp MIGGSRLQPLSKRAAVLLASLLFVLCTSQAAASSPSAESPAGGNIPEWIKback to top mRNA from alignment at C-linearis_contig111:316884..349186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig111.1498.1 ID=mRNA_C-linearis_contig111.1498.1|Name=mRNA_C-linearis_contig111.1498.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=32303bp|location=Sequence derived from alignment at C-linearis_contig111:316884..349186+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig111:316884..349186+ >mRNA_C-linearis_contig111.1498.1 ID=mRNA_C-linearis_contig111.1498.1|Name=mRNA_C-linearis_contig111.1498.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=13470bp|location=Sequence derived from alignment at C-linearis_contig111:316884..349186+ (Chordaria linearis ClinC8C monoicous)back to top |