mRNA_C-linearis_contig111.1489.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: D7FL79_ECTSI (Tropinone reductase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL79_ECTSI) HSP 1 Score: 409 bits (1051), Expect = 1.040e-142 Identity = 202/245 (82.45%), Postives = 223/245 (91.02%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
+GIGKAIVEELA LGAKVLTCSRTE+ V AC+ EW+AKGLEV GIAVDV+T EGRQ LF++AE+ F GALDILVNNVGRSIRK+STFD+TP+EF II+ NF++VL LT+L HPLLK AA AEGAR +GGSSVVN+SSIAGVTAVKTGA YAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPS ESVPR+ EL DRIPMGRWADPHEISGQVAFLCM+ ASYITSQVICVDGGW++NGWM
Sbjct: 26 KGIGKAIVEELACLGAKVLTCSRTEDGVIACITEWRAKGLEVHGIAVDVTTAEGRQELFSAAEEHFDGALDILVNNVGRSIRKSSTFDFTPEEFETIINTNFSTVLSLTKLFHPLLKAAAAAEGARDKGGSSVVNISSIAGVTAVKTGAAYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSTESVPRSTELMDRIPMGRWADPHEISGQVAFLCMKGASYITSQVICVDGGWASNGWM 270
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A6H5JMS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS4_9PHAE) HSP 1 Score: 387 bits (993), Expect = 2.600e-133 Identity = 204/293 (69.62%), Postives = 225/293 (76.79%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVA-------------------------EWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQ-----------------------LLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
+GIGKAIVEELA LGAKVLTCSRTE+ VTAC+ EW+AKGLEV GIAVDV+T EGRQ L+++AE+RF GALDILVNNVGRSIRK+STFDYTP+EF IID NF++VL LT+ L HPLLK AA AEGARA+GGSSVVN+SSIAGV AVKTGA YAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPS ESVPR+ EL DRIPMGRWA+PHEISGQVAFLCM+ ASYITSQVICVDGGW++NGWM
Sbjct: 15 RGIGKAIVEELACLGAKVLTCSRTEDGVTACITGCLCVVLRDLSSRAFAVVLCLWLQQEWRAKGLEVYGIAVDVTTAEGRQELYSAAEERFDGALDILVNNVGRSIRKSSTFDYTPEEFETIIDTNFSTVLSLTKARLYVFTLICLGRFASLIPCSVFLFHPLLKAAAAAEGARAKGGSSVVNISSIAGVIAVKTGAAYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSTESVPRSTELMDRIPMGRWAEPHEISGQVAFLCMKGASYITSQVICVDGGWASNGWM 307
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: D7FL76_ECTSI (Tropinone reductase, putative / tropine dehydrogenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL76_ECTSI) HSP 1 Score: 313 bits (801), Expect = 3.950e-104 Identity = 159/249 (63.86%), Postives = 192/249 (77.11%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVP----RNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
+GIGKAIVEELA LGAKV+TCSR DV AC+ EWK+KGL V+G A DV+T EGR++L AE+ FGG LDILVNNVG +IRK +T DYTP+E A ++D NF S+ LLT+LLHPLLK AA +G+R GGSSV+N+SS+AG+T +K+G+ YAASKAA+N++T WGCEWA DGIRVNAVAP T TP E V R E+T R PM RWAD E+SG VAFLCM+ A YITSQVI DGG++ NGWM
Sbjct: 59 KGIGKAIVEELACLGAKVITCSRNPADVAACLEEWKSKGLLVEGTAADVTTAEGRESLVKLAEEHFGGLLDILVNNVGTNIRK-ATVDYTPEELAYVMDTNFTSLFLLTKLLHPLLKAAAAVKGSRENGGSSVINISSVAGITPIKSGSPYAASKAAMNQVTRLWGCEWAPDGIRVNAVAPWYTKTPLTEPVQADPVRVNEITQRTPMKRWADADEVSGMVAFLCMKGAGYITSQVIATDGGFTANGWM 306
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A835YM08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM08_9STRA) HSP 1 Score: 253 bits (647), Expect = 1.940e-81 Identity = 134/249 (53.82%), Postives = 173/249 (69.48%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPS----MESVPRNAELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
+GIG AIV ELA LGA+V TC+R++ D+ C+AEW+A+GL+V G DVS+ E R L + FGG+LDILVNNVG SIR+ +T DYT +E ++ VNF+S + QL HPLLK A +GG SVVN+ S+AGVT++K+G YAASKAA++++T N CEWA DGIRVN VAP TNTP E + AE+ R PM R A+ E+S VAFLCM+ ASYIT QV+CVDGG++ NGW+
Sbjct: 19 KGIGNAIVVELAHLGAEVYTCARSDADLQQCLAEWRAQGLKVHGSVADVSSAEDRAALLQKVGEAFGGSLDILVNNVGTSIRR-ATVDYTSEEAEHVLRVNFHSCFAMMQLCHPLLKEA--------QGGGSVVNIGSVAGVTSIKSGTPYAASKAAMHKVTQNCACEWAGDGIRVNCVAPWYTNTPLASPVFEDKIKYAEILSRTPMKRIAEAEEVSALVAFLCMRGASYITGQVVCVDGGFTQNGWI 258
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A6U3WSM2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3WSM2_9STRA) HSP 1 Score: 228 bits (581), Expect = 7.740e-71 Identity = 122/249 (49.00%), Postives = 172/249 (69.08%), Query Frame = 1
Query: 1 QGIGKAIVEELASL-GAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAE----LTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
+GIG+AIVEELAS G +VLTCSR+E+D++AC+AEW+ KG++V G+ DVST EGR+ + + ++ GG LDILVNNVG +IRK T +Y P++ I+ NF S+ LT++ HP L+ + + SSVVN+ S+AGVT +K+G+ YA +KAA+N+LT N CEW GIR+N VAP NTP + V ++ E + +R P+GR +P E++G VAFLC+ A YIT QVI VDGG++ G+
Sbjct: 53 KGIGRAIVEELASTHGCRVLTCSRSEDDLSACLAEWREKGMDVDGVVADVSTPEGREAIVSKIDE-VGGKLDILVNNVGTNIRKP-TIEYAPEDLNFILQTNFVSMFELTKMCHPYLRQSYQDRKMT----SSVVNIGSVAGVTCMKSGSPYAITKAAMNQLTGNLACEWGLHGIRINCVAPWYINTPLAKQVLKDEEYKKSVLERTPVGRVGEPEEVAGIVAFLCLPIAGYITGQVISVDGGFTRQGF 295
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: UPI000D1D03F3 (tropinone reductase homolog At5g06060 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1D03F3) HSP 1 Score: 225 bits (574), Expect = 2.490e-70 Identity = 118/248 (47.58%), Postives = 161/248 (64.92%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRN----AELTDRIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
+GIG+++VEELA LGA V TCSR+E+++ + EW+ L+V G D+S GR+ L Q FGG LDILVNNVG ++RK ST DYT ++ + + NF S ++QL HPLLK A G SS+V +SS+AGV A+ TGA+YAA+K A+N+LT N CEWA+DGIRVNAVAP T +E + A + DR P R +P E++ AFL + ++SY+T QVICVDGG++ G+
Sbjct: 22 RGIGRSVVEELAGLGASVYTCSRSEKNLNERLQEWRQSNLDVHGSTCDLSKPSGREELVKLVAQHFGGKLDILVNNVGTNVRKQSTLDYTTEDISTVFSTNFESAFHISQLAHPLLKAA---------GNSSLVFISSVAGVVAIATGALYAATKGAMNQLTKNLACEWAQDGIRVNAVAPWYIKTDLVEEILAKPGYEAAVLDRTPARRVGEPREVAAVAAFLALPASSYVTGQVICVDGGFTVYGF 260
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A2K3NES8_TRIPR (Tropinone reductase-like protein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3NES8_TRIPR) HSP 1 Score: 224 bits (572), Expect = 6.620e-70 Identity = 122/249 (49.00%), Postives = 161/249 (64.66%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTD----RIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
+GIG AIV +LA+ GA V TCSRTE ++ C+ EW+ +G V G DVS+ R+ L F G L+I +NNVG + RK T DYT +E++ ++ +N +S L+QL HPLLK + R G S+V +SS+AGV ++ TGAVYAASKAAIN+LT N CEWAKDGIR N V P AT TP +E + +N + D R P+ R A+P E+S V FLC+ +ASYIT QVICVDGG + G+
Sbjct: 28 RGIGHAIVNDLAAFGATVHTCSRTESELNKCLKEWQTQGFLVTGSVCDVSSRPQRENLVQQVSSTFNGKLNIFINNVGTNFRKP-TIDYTAEEYSELMTINLDSAFHLSQLTHPLLKES--------RVGGSIVFISSVAGVVSLGTGAVYAASKAAINQLTKNLACEWAKDGIRSNCVVPWATRTPLVEHLLQNQKFVDDIMARTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGLTVFGFQ 267
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A396IZB6_MEDTR (Putative oxidoreductase n=6 Tax=Trifolieae TaxID=163742 RepID=A0A396IZB6_MEDTR) HSP 1 Score: 224 bits (571), Expect = 9.380e-70 Identity = 124/249 (49.80%), Postives = 160/249 (64.26%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTD----RIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGWM 735
+GIG AIVE+L GA V TCSR ++++ C+ +W++KG V G DVS+ E R+ L F G L I VNNVG + RK T +YT + ++ I+ +N +S L QL HPLLK A G S+V +SSIAGV ++ TG+VYAASKAAI +LT N CEWAKDGIR N V P TNTP +E + RN + D R P+GR A+ HE+S VAFLC+ +ASYIT QVICVDGG + NG+
Sbjct: 29 RGIGHAIVEDLCGFGATVHTCSRNQDELNNCLNQWRSKGFLVSGSVCDVSSREQREKLIQEVASIFNGKLHIYVNNVGANFRKP-TIEYTAEVYSEIMAINLDSAYHLCQLTHPLLK---------AYGMGSIVFISSIAGVVSLGTGSVYAASKAAITQLTKNLACEWAKDGIRSNCVVPATTNTPLVEHLLRNKQYMDEMLSRTPLGRIAESHEVSSLVAFLCLPAASYITGQVICVDGGLTVNGFQ 267
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: W1NZZ4_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NZZ4_AMBTC) HSP 1 Score: 224 bits (570), Expect = 1.210e-69 Identity = 120/248 (48.39%), Postives = 157/248 (63.31%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTD----RIPMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
+GIG A VEE+ASLGA V TCSR E+D+ C+ EWK GL+ G D+S+ R+ L ++ F G L+ILVNNVG +IRK T YT EF+ ++ N S + QL HPLLK A G S+V +SS+AGV A+ TG +YAA+K A+N++T N CEWAKD IR N+VAP TP +E + +T+ R PM R +P E+S VAFLC+ +ASYIT Q+ICVDGG + NGW
Sbjct: 31 KGIGHATVEEIASLGASVYTCSRNEDDLNKCLNEWKGMGLDAHGSVCDLSSRPDREKLIDAVSSHFKGKLNILVNNVGTNIRKP-TMQYTAAEFSFLMATNLESAYHMCQLTHPLLK---------ASGVGSIVFISSVAGVVALHTGTIYAATKGALNQITKNLACEWAKDNIRTNSVAPWFIKTPLVEDFLQVKGITEGIIARTPMRRMGEPEEVSSLVAFLCLPAASYITGQIICVDGGMTVNGW 268
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Match: A0A6J1CCC2_MOMCH (tropinone reductase homolog At5g06060 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CCC2_MOMCH) HSP 1 Score: 224 bits (570), Expect = 1.330e-69 Identity = 118/248 (47.58%), Postives = 165/248 (66.53%), Query Frame = 1
Query: 1 QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSTTEGRQTLFNSAEQRFGGALDILVNNVGRSIRKTSTFDYTPQEFAVIIDVNFNSVLLLTQLLHPLLKTAAEAEGARARGGSSVVNVSSIAGVTAVKTGAVYAASKAAINRLTINWGCEWAKDGIRVNAVAPGATNTPSMESVPRNAELTDRI----PMGRWADPHEISGQVAFLCMQSASYITSQVICVDGGWSNNGW 732
+GIG+A+VEELA+LGA V TCSR E ++ C+ EW+ KG V+G D S+ R+ L E F G L+ILVNNVG++IRK T +Y+ +EF+ ++ NF S L+QL HPLLK A G S+V +SS+ G+ ++ +G++YAA+K+AIN+LT N CEWAKD IR N VAP TNTP +E + N D++ P+GR + +E+S VAFLC+ +ASYIT Q+I VDGG++ NG+
Sbjct: 27 RGIGRAVVEELAALGASVHTCSRNEAELNRCLKEWEGKGFVVRGSVCDASSRTHRERLMQEVESAFNGRLNILVNNVGKNIRKP-TIEYSLEEFSSLMTTNFESAYHLSQLSHPLLK---------ASGNGSIVFISSVGGLMSIGSGSIYAATKSAINQLTKNLACEWAKDNIRSNCVAPWYTNTPLVEKLLDNKTFVDKVVSRTPLGRIGESNEVSSLVAFLCLPTASYITGQIISVDGGFTANGF 264 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig111.1489.1 >prot_C-linearis_contig111.1489.1 ID=prot_C-linearis_contig111.1489.1|Name=mRNA_C-linearis_contig111.1489.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp QGIGKAIVEELASLGAKVLTCSRTEEDVTACVAEWKAKGLEVQGIAVDVSback to top mRNA from alignment at C-linearis_contig111:143031..146276- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig111.1489.1 ID=mRNA_C-linearis_contig111.1489.1|Name=mRNA_C-linearis_contig111.1489.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3246bp|location=Sequence derived from alignment at C-linearis_contig111:143031..146276- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig111:143031..146276- >mRNA_C-linearis_contig111.1489.1 ID=mRNA_C-linearis_contig111.1489.1|Name=mRNA_C-linearis_contig111.1489.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at C-linearis_contig111:143031..146276- (Chordaria linearis ClinC8C monoicous)back to top |