mRNA_C-linearis_contig111.1483.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig111.1483.1
Unique Name	mRNA_C-linearis_contig111.1483.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig111.1483.1 vs. uniprot

BLAST of mRNA_C-linearis_contig111.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig111	contig	C-linearis_contig111:85234..92453 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	286
Cds size	285
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927480.058525-CDS-C-linearis_contig111:85234..85471	1622927480.058525-CDS-C-linearis_contig111:85234..85471	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig111 85235..85471 -
1690879724.9766607-CDS-C-linearis_contig111:85234..85471	1690879724.9766607-CDS-C-linearis_contig111:85234..85471	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig111 85235..85471 -
1622927480.0727878-CDS-C-linearis_contig111:92405..92453	1622927480.0727878-CDS-C-linearis_contig111:92405..92453	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig111 92406..92453 -
1690879724.987683-CDS-C-linearis_contig111:92405..92453	1690879724.987683-CDS-C-linearis_contig111:92405..92453	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig111 92406..92453 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig111.1483.1	prot_C-linearis_contig111.1483.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig111 85235..92453 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig111:85234..92453-
coding sequence from alignment at C-linearis_contig111:85234..92453-

protein sequence of mRNA_C-linearis_contig111.1483.1

>prot_C-linearis_contig111.1483.1 ID=prot_C-linearis_contig111.1483.1|Name=mRNA_C-linearis_contig111.1483.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=95bp
GCREPREGKVPAVERQRGVFVHVCRFSQSFSRFFPPPSEGSGKARRREGI
QSRGDGTEANTLGTVTGFDGRSGSNKRKAIPVSTSCANRRTGQGR

mRNA from alignment at C-linearis_contig111:85234..92453-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig111.1483.1 ID=mRNA_C-linearis_contig111.1483.1|Name=mRNA_C-linearis_contig111.1483.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7220bp|location=Sequence derived from alignment at C-linearis_contig111:85234..92453- (Chordaria linearis ClinC8C monoicous)
GGTTGCCGGGAGCCGAGGGAAGGAAAAGTTCCGGCTGTGGAACGACAGGT
GAGGCGAGCCCAGGCGTGACGACCCGCCGCGTGTGTTGCTTTTTTGGCCT
TGCGCCGGAATAAAACGGAAGTTGTTTTCGGACCCTCTCTCGCTCCCTCC
CTCTCTTTCTCTCATAAACCCCTCCCTCTCACGTTGTGCTTACCGGGTTG
AGGTTGGGACGGGGCGATTTTGGGCGAGCGTCGTTGGGGGGTGTAGCACG
TGTTGTGCTGTCTACCGCCTGTGTTTCTCTTGAGCGTTGCTCGATGGCCC
GTTGTTCATGTATGCCAAGAAAGCTCTGCAGCCTAGGCTGTAGCTCGAAC
ATCAACATTATCTTTACAATAATCGCGTCTCGCTGTTATTTTTTTGGTTG
CATACGAAGCGCTACTACTGCTCAGCTTCTTCCACTTGTCCCTCTCCGCC
TCGCGGGCGATCGAGCCGTGGTCCCAACCCCCCTCTCATCTCCCTCTTCA
AATATGGGAACGCGGCCAAGGAGTCACATGCCCGGGTCGTTTGCTTTCGC
CGCAACGCGGTCGGCTCATCTAATCCCGTCGACTGCTTGCTTGCTGCCAA
AGGCGGCCAGCGAATGAAATTGAAGACAGCACATGACATGTCAAATTCAT
CATGGATATACTGGTACGGAAGTATTTTTATTTTTGGCTGGCTCCCTCAC
ACATGGCAATCTTTCTGTTTCTAGAGACACAGAGCGCAAAACGAACACAC
ACGGGTTATACATCTAGACTTGTTGCCTAATGTCCAAGTGCAGGAGAGAG
GTGCCCCCCGTTCTCCCTGAGTTCGGAAGCCCCCCTTCTTTCCCGCCCCC
GCAAGACGGGAATGCACCCCGCCGGCCCCGGCGGTGATGTTTGCTTCTGT
TCCTCCGTCCTCAACCAGAGAGAGAAATGAAATGGTACATGAGGAAATGG
GTGACGACACCTTGAAAAGAGGAAATAGGAAATAGGGTTAGGGTTGGCAA
ACGTAGATGCCCTCTCTCCTCTTCGGTGTAATTTGTAATTTGTGATTTGT
GTCCGCCAAACAAAAGGCGCCGACAAGTACATATGTACAACGTGATCGGT
ACTCTACCGGTAGATACGATAAAGAGGCGCGCTCAGCCGTTGGTGCCAGG
TTGCCGGCGTGTCGCGTTGTATTTCGGCGATTGCTGCCTGTAGGCCGGCC
AGAGAGGCCGAGGTGCAAATCTACTTGTAGCATTCTACGATGTGATACTA
CTTCGAAGTATGTCTCGCTTCCACCACAAGAAAAACACAGTCTGTCTAAA
GATTTAGTATAGCAGTATCGCACATTATGAACCTGACATTCCCTCGCGCT
CATGTGGGGGGGGCTACGATCGCCCTTGTTTCCTAGCGCGCTCTGTCGTG
CACGCGCCTAGTGAACAATTTAGGTTGTTTGTTTGTCAGCGTGGAGCTCT
CCTCTCCGGCGGTGCAGCACGGCGCATCTTGTTCTTGTAATTTATCGCCG
TTGTGCATTTTTTTTATTTTGGTTCTGTTTCGGCTGACACTGCTCGTTTA
TCTGGCGTTGATCTGGCGTTGATCTGGCCCGTGTAGCGCACCGACCGCCG
CCACCATCACGGGAGTGCCCTGGTTGCATGTTCTTGCTCTCTCGGATGCA
TATCATTATTTTTATTCGCCTCATTGCACTACTCTGTGGCTGGCGTGTTT
CGTCGGGCTACGGCAGTACTTATTTTTCTGTGTGTGTGTCGAAATATAGC
ATCACATTGCTGTTGATGCATTGTCTGTGTTCTACAATACTCGTGTTGCA
TTACTAATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAACTCGTTACAGTTTA
ATCCCCAAAATCTAGCAAGATCACAGCCGGTGGTCACAAAAGTGCTAGAG
CCATCAGAGAATCCTAAAGAACACGCACACTTTTAGCAGGGACAGGGTAC
ACAAGCCCGAAGACGCAGCTGCTGTCTGAAGTGCTGCCAGAATGACAGTC
CGCGGACATACAGTACAGTGAAAAAGAACAGCAAACCAAACAAAACCATC
ACATCAATTGAAAACAACCCGAGTCTATCCCGAACGTCTGTGTTAGGCAC
AGCATTGTAAATATCGACACTGATTGGGAATCGTTCCACATTGAAGGGTC
TTCCACGATGCAGGTACACACTTAAGGCACCCGGGGTATCCGCGCCATCG
CTGTGCCGTCTCTCTACAAAACCAGTGACGTCATTACAAAAACCCAGCAC
CAACATCCACCCAGAAAAAAAAGAAATAATTGCCAACACATAATGTTTGT
CCGTGCGCCACGGCTCGATGTCGTCCGCATGCTCCGGTGCCGCTGCTCCG
ATGCCGCTGTGGCCAGTCCTAGCACGACCACACTCGACCCGCTTCGTCTG
TACACGCTCTCGTCGCTGTCCTTCCCAGCCGGTCCCTCGCTTTCTCCCTC
GTTGCACTTATAGGGTGCTTGGTCTTCAAAAAACATTTCTCGCGCCGAAG
GGGTCAACCAGCCCAGTCTTCAGCTCGTCGCCACCCATCCATCCTCCTTA
GATGGTGCAGCGAAGCCAGGTTACCGAGACAGTACAGCTCCCTCTAGCAA
ACCTAGAGCCGTGTACGTAGTGTCCTTCACCTTTCTGGTGGCATCTGCCT
CCGCGCACAGAGTGAGATGGACACTGCTGTCTACACCGACGGCCATAAAG
ACCCGTGCATCTGAACTTTTGTGCCTGACGCACCAGTGCCGACCCAACTC
CACCGCTGCGCACGCCTCGCCGCGGGTGCGCAGCAGCAAGAAGGTATCGG
TCCACCCGAGGGTGAGTCTAGCCTTGCTCGCTAGAAAGACCCCCCCCCTC
GCTATGGGCCATGCCTAAGCAAAAGCCTTGGCAAGGCAGCGAGTGGAAGA
GGGAGAGTAATTACTCCGTACTTTTGAGGCCAAACCCACATGCAAACGCT
TTTGCCGTTGGCGGGACAAAAAAAGTGCTGTGGATATAATTTACGGACTA
CCATATACTACCTTGCTTAGTAGGGTTGAGTACTGGCGCAGCCAGTCAGG
ATCCTGTATACTGGCTGCGATCCGATCAGTACACTGGTGGCGCGACGAAG
CCGCTTTTTTACGCGATTTGGCTTCACTCGAGCATCAAAAATGAGTTATT
TTGGCCCACTGACAGAGGCATTATCGGGGTGAAAACGATAGAAACCCCGC
GTTTGTGTGTGTGTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGAC
AGTCCCTCCGATCAAGGCGAGACTTGTACTACACGTTGCGGTGTATTTAG
AGTACTACACTTGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGG
GGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTTTTCTTTT
TCTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTATCGC
GAGAAGGGTGCAGCCATCCCTTTCCCTCGTCAACGCGCTGAGTCAAAGTT
TGGTACTCACGACCTTTTTCAGCTATGTTATGTTATCGCTTTCACCTGCA
AAGTCGCAAAAGAAAAACCTTTGCTTGGAATTGAACTCCAGACGAGTACG
ACGCCCAAATTTCAGCGAATTTATCGGTTTCCGACGAGGAAATGTGGGCA
CAAATTTTAAACCTTGCAATCCCTATAAACTCCAGGATCGTGGGAGACGT
ATGCATACGCATGAGTTGAAATGGTTAGAATGAATGGTTGTATATAATCC
GTAGAAACTTAAGTATGGTCAGTCCAGGACAATTTGTCCATTTTGTTTTT
TCGCGATATTTCTCGAAAAAAAACGAATTGAAACGTGAAATAACTTTTTA
GCCGTGACGGCGGCGTCGAGCTGCGTCGATATCCGATGAGTTTTTTTGAT
TCTCAGGCGAAATGCTACATTTTTGGCCGAAATGATCCACAGAATCCCTA
CCCCCCACCCCACCCCCACGGGGCCCCCTAATTACGTCATGGAACCCCAG
AATTTCACGGCAAGCAGCCATATGCAATATATTCGTATATACAATTAAAG
CGACACAGCTCTCAAAGCACACACCACCCAGCAACCTCTAAAACGGGCGT
CCCTCGCTTAAAAATGTATGTAATGAAAACATATAAAAAATATGATTGCA
CATGCACATATGTACATACATACATACCACGCTTGAACACCACAAGTCAA
CAAAACGGATACCACACCTCTCGAAATAAATCATTTTTTCAACAATGCCC
ACGCTCTGCTCAACGGCTTCAACACCAAACGCCGCAGCAGCTTTTTCCTC
TTCCACGCCTTGAATGTCGTTTTTGCTCGCCGAACCACCGAGCGAGCGAA
GCCTGCTTTCGCCGGTGCACAGTCCAGCGACTTGGTTGCGCAGGGCGCGG
ACGCGGCGCAACCTCGGGAACGAGGGACTGTGCGCTGCGAGCTGCTGCAG
ACACGACGCATGCTGCAGCGGCGGACCCGAAAAGCAGCGTGGCCTGACTT
CCACCTGACGAGGTACCAGCGTCCAGGTCGTTCCACTACTCGTCGTGCCG
TCTGGTGTGTCGTCGTCAACTTCCACATCAGAAAGAGGACTCTCCTCCAG
TGGCTCATCGGCAGCAGCGACAGCGGAAACATGTTTTTTTCGGCTCTGAA
ATTGGCCGGTGGCCTTGTCCTTGCGGAGCTTTCGTTTGCCGCCCCACCGA
GGCATGACTGCTGTGGGTACTGGGCGCCTTTGCAGCGCGTGTGGATGTGG
GTTGCGCCCCTTGCACAGTAGTGGCGGGTGTGTTGTGTGTGTGGTGGTGT
GCGCATCACAATTTTTCCTCTCAGCAGCAGAACAAAAAACGGAATATCTC
ACGAAATACGTGATATTTTAAAATTCGAAAAAAACTCCCCGTGGGGGATT
TCGAAAGGAATCGTTTGCCGTGGTCTATTTGAAAATCGTACGGGTGATAA
TTGCAGCATCATCGGAACAAAAATGGTCTCCGATCACAGTTTTTCCCCAA
TAACTTTTTCGATTTTTACCCAAATTAAAATCGGATAAATTTCCCCCCTG
GGGAATTCCGAGAGCTGTCCGAATCCGGTCTCAGATTTGTGCTCCGAAAA
AACTACACCCCGGGATCGACGGAACAAGATTTGCCGGTTATTTGGAAATA
AAAGAGAAACGAAAAAACAAAAACAAAATCGCGTCCCGTACGAAGACGCG
CCTGAAGACAGGGCGTTTGCCGGTACTTTTGGTTTTCGGAACAACCCTCC
CATCACCGAGATATATGTTCCTAGGTGCAGGTCGGAATTGTAGAAAATTT
GTCCTGGACTGACCATATGAAAAAGACTACTACACTACTCTGCGTTGTAG
AAGTAACAAACGCAAGCAACCAAGCAAAAAATCATAGATTCAGCAGTTGA
AAGTACAAGGCACAAGGTGGTGTTCACCACTTCCACCACGTCGTCTGCGT
CGGGCGCTGTCGGCGCATCGGGCTGCTGCTGCTGCTGCCGCTGCTGCTGC
TGCCGCTCTGCTGACACAGCGGACGTAGCTGCTGCTGACGCAGCAGCCCC
TGCATCATCAGCACCACTGCCTGGGTCTGCAGCAGACGAGCTGGCAGAGG
ATACAAACCTGTCCATCGTTCTATGGTCTCCCGCCGCGTATGTGGTTGGT
GTGGGGTGTGCTGTATGTGTCTCTCTCTCTCCTCTCTCCTTTTGAGGCGG
GCTGCATATGTGGGTTTCCGCTGGTTCTTGAGGCGTATTGAGGGACGTAC
GTGAGATGTGTATGTACTGGAGCACTGGAGGCCCGGTCTACCGGGTCTTG
TGTACGGCCAGTACACAAGACCTGGCAGTACGTACTGGTTCAGTACCCAA
CCCTATTGCTTAGCGTTTTCGTTACGTTGCCTCATGTAATACTTCCTCTG
TATCACAAGTCTGTGCATTTATGGGCGCTTACACGTTTGGGTACTCCCTC
TGTTAAAGTTTGTCCTTGTAGTGTGCGTCAGAAAGACAACACGCAGAGAA
GCTCACTATTTGTTTTTTAAAGAAAGCGGGAGTTAACTCCAGCACTAAAA
TTGCGTCATGATACACCCCATTTTGGTCCATGTTCGCGAATGGTGGGACT
TGTCGATTCGTTTAGACTCAATATTGGCCAAATTTTGGACGTTTTCACGC
CAATCGTTACACAGCGATTACACTTGCAACAAGATGTAAGATGATGAGGC
GGGTGCAGCAAGTCAACGTCACGGAGATATCCGAAATTATAAATTAGTGT
TTGTTTTGCGATTTTGGCCTTTGTTCAACGATTTTCGTGATTTTTCATTG
TCGCACCAATCTCCCATATGTTTTTCCGGGATAACTTTAACGAGGGAATA
TCAACCATTTCTGGCCCGACCAACCTTTTTCGGCCGTGCGATTACATCGA
ACGTAAACCCCTTTTGCTATTCGAAAGCAATGGGTTTACAAGTAGCGCCT
TAAAAACGCGCAGGAAAGCGATGCAAAAACAAGACCAAATCGGACACCAT
TGAGGGGTCGTACAAACGTAACTGCACAGACTTATGATACAGAGGAAGTA
TTGCCTCACTACAGTCAGTATGGCCGTACTCCACCTTGGTGCCGCACCAT
CTCGCCGAGCTCAGCGTGGCAACCTACGTACGCGGCGACATTATTTTCAC
CTGAAACTGAAACTGAAACTTGAGACGAGTGAAGTGAAGTGAAGTGAAGT
GAAGTGAAGGTGGGTGGGTGGGTGGTCTCTCTGGACCCTTGCTGGTTCTA
AGGTCAACCCTACTGCTGCTGTACCACCTTTGTCTTACGTACTCGGGTAT
TTTGTGTTTTGCAATGTTTTAGCTCGGCTTCTCAACCACCACCCTCCCCT
GCACCTTCTCCCCCCCCCGTCTTCGCCCGCGGTTTCCTGTTGACACACGC
GCTCTGTTATGGCATGTCGTTTCCCGTTACAGCGAGGGGTTTTTGTGCAT
GTGTGCAGATTCAGTCAGTCATTCAGTCGATTTTTCCCACCCCCATCGGA
AGGGAGCGGGAAAGCGAGGCGGAGAGAGGGGATCCAGTCGCGCGGTGATG
GCACAGAGGCCAACACCCTAGGGACGGTCACGGGCTTTGACGGCCGATCC
GGTTCCAACAAAAGGAAAGCCATCCCCGTTAGCACATCGTGCGCGAACAG
GAGGACAGGGCAGGGCAGGG

Coding sequence (CDS) from alignment at C-linearis_contig111:85234..92453-

>mRNA_C-linearis_contig111.1483.1 ID=mRNA_C-linearis_contig111.1483.1|Name=mRNA_C-linearis_contig111.1483.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at C-linearis_contig111:85234..92453- (Chordaria linearis ClinC8C monoicous)
GGTTGCCGGGAGCCGAGGGAAGGAAAAGTTCCGGCTGTGGAACGACAGGG
TTGCCGGGAGCCGAGGGAAGGAAAAGTTCCGGCTGTGGAACGACAGCGAG
GGGTTTTTGTGCATGTGTGCAGATTCAGTCAGTCATTCAGTCGATTTTTC
CCACCCCCATCGGAAGGGAGCGGGAAAGCGAGGCGGAGAGAGGGGATCCA
GTCGCGCGGTGATGGCACAGAGGCCAACACCCTAGGGACGGTCACGGGCT
TTGACGGCCGATCCGGTTCCAACAAAAGGAAAGCCATCCCCGTTAGCACA
TCGTGCGCGAACAGGAGGACAGGGCAGGGCAGGCGAGGGGTTTTTGTGCA
TGTGTGCAGATTCAGTCAGTCATTCAGTCGATTTTTCCCACCCCCATCGG
AAGGGAGCGGGAAAGCGAGGCGGAGAGAGGGGATCCAGTCGCGCGGTGAT
GGCACAGAGGCCAACACCCTAGGGACGGTCACGGGCTTTGACGGCCGATC
CGGTTCCAACAAAAGGAAAGCCATCCCCGTTAGCACATCGTGCGCGAACA
GGAGGACAGGGCAGGGCAGG