mRNA_C-linearis_contig110.1456.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1456.1
Unique NamemRNA_C-linearis_contig110.1456.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: A0A6H5JZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.900e-11
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 PSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            P P    RP+E  GMAPS E+L+L+Q REAAK EAEA GGGRR RAPSRRALEASGR
Sbjct:   99 PPPQPTSRPSE--GMAPSVEMLILRQAREAAKTEAEASGGGRRPRAPSRRALEASGR 153
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: D8LH07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH07_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.630e-11
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    4 PSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASG 171
            P P    RP+E  GMAPS E+L+L+Q REAAK EAEA GGGRRARAPSRRALEASG
Sbjct:  263 PPPQPTSRPSE--GMAPSVEMLILRQAREAAKTEAEASGGGRRARAPSRRALEASG 316
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 7.180e-11
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   10 PSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            P    RP+E  GM+PS E+L+L+Q REAAK+EAEA GGGRRARAPSRRALEASGR
Sbjct:  365 PQPTNRPSE--GMSPSVEMLILRQAREAAKKEAEASGGGRRARAPSRRALEASGR 417
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: A0A6H5L360_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L360_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.460e-10
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 PSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            P  S N R A+++GMAPS E L+L+Q REAAK EAEA G GRR RAPSRRALEA+GR
Sbjct:  446 PPSSSNNRLADSSGMAPSVEFLVLRQAREAAKTEAEASGLGRRPRAPSRRALEAAGR 502
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: A0A6H5KYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.240e-9
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 PSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            P P    RP++  GMAPS E+L+L+Q REAAK EAEA G GRR RAPSRRALEASGR
Sbjct:  363 PPPQPTSRPSD--GMAPSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGR 417
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: A0A6H5KLI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.260e-9
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 PSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            P P    RP++  GMAPS E+L+L+Q REAAK EAEA G GRR RAPSRRALEASGR
Sbjct:  417 PPPQPTSRPSD--GMAPSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGR 471
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: D7G0U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U7_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.690e-9
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 PSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            P  S N R A+++GMAPS E L+L+Q RE AK EAEA G GRR RAPSRRALEA+GR
Sbjct:  253 PPSSPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGR 309
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: D7G0V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.710e-9
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 PSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            P  S N R A+++GMAPS E L+L+Q RE AK EAEA G GRR RAPSRRALEA+GR
Sbjct:  207 PPSSPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGR 263
[Close]
BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: D8LEM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM4_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.960e-8
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   25 RPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASG 171
            R  +T GMAPS E  LL+Q RE AK+EA A GGGRR RAPSRRALEASG
Sbjct:  172 RSGDTAGMAPSVEFHLLRQAREVAKKEAAASGGGRRPRAPSRRALEASG 220
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BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Match: A0A6H5LLY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLY6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-8
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   19 NRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSRRALEASGR 174
            N R A+++GMAPS E L+L+Q RE AK EAEA G GRR RAPSRRALEA+GR
Sbjct:  450 NNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGR 501
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JZL0_9PHAE3.900e-1171.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH07_ECTSI6.630e-1173.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGW8_ECTSI7.180e-1172.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L360_9PHAE6.460e-1068.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYF0_9PHAE2.240e-968.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLI4_9PHAE2.260e-968.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0U7_ECTSI7.690e-966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0V0_ECTSI7.710e-966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEM4_ECTSI1.960e-871.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LLY6_9PHAE2.010e-869.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:241489..241664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.4860585-CDS-C-linearis_contig110:241488..2416621622927475.4860585-CDS-C-linearis_contig110:241488..241662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 241489..241662 +
1690879723.1225042-CDS-C-linearis_contig110:241488..2416621690879723.1225042-CDS-C-linearis_contig110:241488..241662Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 241489..241662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1456.1prot_C-linearis_contig110.1456.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 241489..241662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1456.1

>prot_C-linearis_contig110.1456.1 ID=prot_C-linearis_contig110.1456.1|Name=mRNA_C-linearis_contig110.1456.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=58bp
SPSPSGNRRPAETTGMAPSAEILLLQQTREAAKREAEARGGGRRARAPSR
RALEASGR
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mRNA from alignment at C-linearis_contig110:241489..241664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1456.1 ID=mRNA_C-linearis_contig110.1456.1|Name=mRNA_C-linearis_contig110.1456.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=176bp|location=Sequence derived from alignment at C-linearis_contig110:241489..241664+ (Chordaria linearis ClinC8C monoicous)
TCGCCCAGCCCCTCCGGCAACAGGCGCCCGGCCGAAACAACCGGAATGGC
CCCGTCGGCCGAAATCCTCCTTCTCCAGCAGACAAGGGAGGCGGCCAAGA
GGGAGGCCGAGGCCCGCGGCGGCGGCAGGAGGGCGCGTGCGCCGTCGCGC
CGCGCCCTTGAGGCCTCGGGGCGCAT
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Coding sequence (CDS) from alignment at C-linearis_contig110:241489..241664+

>mRNA_C-linearis_contig110.1456.1 ID=mRNA_C-linearis_contig110.1456.1|Name=mRNA_C-linearis_contig110.1456.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at C-linearis_contig110:241489..241664+ (Chordaria linearis ClinC8C monoicous)
TCGCCCAGCCCCTCCGGCAACAGGCGCCCGGCCGAAACAACCGGAATGGC
CCCGTCGGCCGAAATCCTCCTTCTCCAGCAGACAAGGGAGGCGGCCAAGA
GGGAGGCCGAGGCCCGCGGCGGCGGCAGGAGGGCGCGTGCGCCGTCGCGC
CGCGCCCTTGAGGCCTCGGGGCGCTCGCCCAGCCCCTCCGGCAACAGGCG
CCCGGCCGAAACAACCGGAATGGCCCCGTCGGCCGAAATCCTCCTTCTCC
AGCAGACAAGGGAGGCGGCCAAGAGGGAGGCCGAGGCCCGCGGCGGCGGC
AGGAGGGCGCGTGCGCCGTCGCGCCGCGCCCTTGAGGCCTCGGGGCGC
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