mRNA_C-linearis_contig110.1450.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1450.1
Unique NamemRNA_C-linearis_contig110.1450.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE)

HSP 1 Score: 943 bits (2438), Expect = 0.000e+0
Identity = 512/591 (86.63%), Postives = 531/591 (89.85%), Query Frame = 2 
Query:  296 PPRPAMAMPLPEELMSSVLVFLRMKDMLEWRVVSSSTKAMWASESQVSRVARRVSVDLHLTLSKLKAISLLAPSPRLDGTEPVANRDVHSSKWRKALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEETGEWIENLTLAQTRERLKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERVHESNKRLRPQASQTDAATFPFPQGPGCSSGVDLRGLAEDAEAEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTNKAEDSTDATALGGWYSRCDTCEQSAEGSDQQRLIAALYGDLAGVRDFAVRTVEDAKVLVKVCSRAVAVQSFLTGDAMKGKRATKELAAATALCKEAETEAEQTLRPFVSSAETFKWSVNLISTAKGREFMSKLTRSMERDEVLPMLPFEKAFVKDLLGMVFG 2068
            P RPAMAMPLPEELMSSVLVFLRMKDML+WRVVSSSTKAMWASESQVSRVARRVSVDLHLTLSKLKAISLLAPSPRLDGT+PVANRDVHSSKW KALNIGHKGAAGHV+GNTM SF+EAVRLGVDVIEFDVLTT DGVVICHHDPLIEE+GEWIENLTLAQTRERLKH+VSTFEEMLQEK LSES VHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNA+RQAIPE+A LRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNS+HFMERLLKMGVDGLC+DYP  VHESN+RLRPQASQTDAATFPFPQGPG  SGVDLRGLA  A +E                                        XXXXXXXXXXXXXXXXXXX TTNKAEDSTDAT LGGWYSRCDTCE+SAEGSDQQRLIAALYGDLAGVRDFAVRTVEDAKVLVKVCSRAVAV+SFL GDAMKGKRAT+ELAAATAL KEAET AEQTLRPFVSSAETFKWSV+LISTA+GREFMS+LTRSM+RDEVLPMLPFEKAFVKDLLGMVF 
Sbjct:   22 PVRPAMAMPLPEELMSSVLVFLRMKDMLQWRVVSSSTKAMWASESQVSRVARRVSVDLHLTLSKLKAISLLAPSPRLDGTQPVANRDVHSSKWGKALNIGHKGAAGHVEGNTMPSFLEAVRLGVDVIEFDVLTTSDGVVICHHDPLIEESGEWIENLTLAQTRERLKHNVSTFEEMLQEKVLSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAYRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPGLVHESNRRLRPQASQTDAATFPFPQGPGAYSGVDLRGLAAPASSE---------------GKAVGSTALDSDGNNSSSTASMSGSXXXXXXXXXXXXXXXXXXXXTTNKAEDSTDATVLGGWYSRCDTCEESAEGSDQQRLIAALYGDLAGVRDFAVRTVEDAKVLVKVCSRAVAVESFLAGDAMKGKRATRELAAATALSKEAETLAEQTLRPFVSSAETFKWSVDLISTAQGREFMSQLTRSMKRDEVLPMLPFEKAFVKDLLGMVFS 597
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A835YQF6_9STRA (PLC-like phosphodiesterase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF6_9STRA)

HSP 1 Score: 287 bits (734), Expect = 1.200e-83
Identity = 151/351 (43.02%), Postives = 216/351 (61.54%), Query Frame = 2 
Query:  332 ELMSSVLVFLRMKDMLEWRVVSSST-----------KAMWASESQVSRVARRVSVDLHLTLSKLKAISLLA-----PSPRLDGTEPVANRDVHSSKWRKALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEETGEWIENLTLAQTRERLKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERVHESNKRLRPQASQTDAATFPFPQG 1336
            +L  + L++L  + +L W  VS  +             ++AS+    R  +R+ ++LH +   L  +S LA     P+P    T   A     ++  ++ LNIGHKGA GHV GNT+ SF  AV LGVD+IEFDV+   DG+ +CHHDPL E +G+W +++T+A+ R  L     T +EML ++ L +S VHLY D+KHT IVRP + +++ AV R GW A R VVATF+Q++LL++NAFRQAIPE+  LRTA I+D  PL+LARDF+AL    +S G+  V P+ VADC RRG+++W WTVN    ++ L ++G+DG+C+DYPE VH +              T P P G
Sbjct:    4 DLQGACLLYLDTRSLLRWAAVSRGSFSTGSSSNRNFNGIFASQGHAQRHIQRLLLELHHSKDHLHHVSQLAGHSIKPAPPAWATAAGAT----ATPPKRVLNIGHKGAEGHVKGNTLDSFHRAVELGVDMIEFDVVACADGI-LCHHDPLHEASGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELVHAAAAXXXXXXXXXXXXTPPHPAG 349
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A4D9D615_9STRA (GP-PDE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D615_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.380e-48
Identity = 135/389 (34.70%), Postives = 201/389 (51.67%), Query Frame = 2 
Query:  323 LPEELMSSVLVFLRMKDMLEWRVVSSSTKAMWASESQVSRVARRVSVDLHLTLSKLKAISLLAPSPR---LDGTEPVAN--RDVHSSKWR---------------------KALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEETGEWIENLTLAQTRERLKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPE-VAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERV----HESNKRLRPQASQTDAATFPFPQGPGCSSGVDLRGLAEDAEAEE 1396
            +P +LM  +   L    +L  R  S      + +E+    V++R++V+LH +  +L+  S +   P+    DG E   +   D   + W                      + L++GH+GA+GHV GN++ASF  AV LG D+IE DV     G VI HHD  + + G  +ENL LAQ + R+   V     +L +  L  S V LY+D+K   +V P++  + +A+ + GW   RL+VA+F Q D+++VNA R A P  +A L+T  I+DG P++ A+++ AL V   S G   V P  + D  RRGI V VWTVN+   M R   +GVD L +D+PER      E  + LR   +Q  AA  P   G G +   +  G+ EDAE  E
Sbjct:   38 MPPKLMGLLYSLLPTSSLLALRCCSKGHLVRFHAENIWEPVSKRLTVELHASRLRLETASDVCGPPQPPSADGDEDDTDVGEDTDLAGWTHDPSRFRGHPHLFQTPPRLVPRPLSVGHRGASGHVKGNSLASFQRAVALGADMIELDVCLDRSGEVIVHHDRYLPD-GRLLENLALAQIK-RVDPAVEPLSRVLAD--LRASGVSLYLDIKTDRVVAPLMRLLHEAIAQKGWAPSRLLVASFNQYDMIEVNAHRLAYPATLAALQTCIIVDGVPISFAKEYAALGVHWCSIGDGCVLPSFLEDAHRRGIGVMVWTVNNASAMRRYADLGVDALVTDFPERFVAVRQEGEEALR--VAQNAAA--PKKGGEGTAGPGEAEGVGEDAEGRE 418
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: W7T4I9_9STRA (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4I9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.770e-26
Identity = 71/176 (40.34%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:  671 VIEFDVLTTLDGVVICHHDPLIEETGEWIENLTLAQTRERLKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPE-VAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNS 1195
            +IE DV     G VI HHD  + + G  +ENL LAQ + R+   V     +L +  L  S V LY+D+K   +V P++  + +A+ + GW   RL+VA+F Q D+++VNA R A P  +A L+T  I+DG P++ A+++ AL V   S G   V P  + D  RRGI V VWTVN+
Sbjct:    1 MIELDVCLDRSGEVIVHHDRYLPD-GRLLENLALAQIK-RVDPAVEPLARVLAD--LRASGVSLYLDIKTDRVVAPLMRLLHEAIAQKGWAPSRLLVASFNQYDMIEVNAHRLAYPATLAALQTCIIVDGVPISFAKEYAALGVHWCSIGDGCVLPSFLEDAHRRGIGVMVWTVNN 172
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A2E0JIA8_9FLAO (Glycerophosphodiester phosphodiesterase n=2 Tax=Flavobacteriales TaxID=200644 RepID=A0A2E0JIA8_9FLAO)

HSP 1 Score: 119 bits (299), Expect = 2.490e-26
Identity = 73/241 (30.29%), Postives = 133/241 (55.19%), Query Frame = 2 
Query:  566 SKWRKALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEE---TGEWIENLTLAQTRERL---KHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERVHE 1270
            +K+ K + IGH+GA GH+  NT+ S  +A+ LGVD IE DV     G ++  HD  +E    +  +IE+L L   +  +   K+ + T EE+LQ   L +  V L I++K      P  + + Q  ++ GWT D+ ++++F+  +L ++      IP +A L  + I     L  A+  KA+ ++      +  + + +   Q  G++V+ +T+N +  +ER++K+GVD + +DYPER+++
Sbjct:   18 NKFDKVMIIGHRGAMGHIAENTIPSINKAMELGVDGIEIDVFKCKSGELVVFHDERLERLTNSSGFIESLELDSIKNIIVLDKYRIPTLEEVLQ---LIDGQVKLNIELKGYGTASPTNYLINQYNNKGGWTEDKFIISSFKWDELEKIRELNMTIP-IAVLVNSNINPIDALPFAKKIKAIAINPYFKDLNQKNIEKI---QSTGLKVFPYTINELDDIERMIKLGVDAIITDYPERINK 251
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A0S8IH52_9BACT (GP-PDE domain-containing protein n=1 Tax=Omnitrophica WOR_2 bacterium SM23_72 TaxID=1703777 RepID=A0A0S8IH52_9BACT)

HSP 1 Score: 113 bits (283), Expect = 1.790e-24
Identity = 68/234 (29.06%), Postives = 123/234 (52.56%), Query Frame = 2 
Query:  584 LNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIE----ETGEWIENLTLAQTRER---LKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERV 1264
            L IGH+GA G+   NT+ SF +A+ L VD+IEFDV     G V+  HD +++    +TG ++ N TL + +         + T EE L      +  V + I++K   +   V   + + V+  GW+ D  +V++F   +LL+ N         ++++   ++ G P+  A     +    L   K+ ++  L+ D  +RG++V+V+T N+   + ++  MGVDG+ SD+P+R+
Sbjct:    3 LRIGHRGARGYEPENTILSFKKALELNVDMIEFDVCICKTGEVVLFHDKMVDLVVDDTG-YVANKTLQELKAYDVGKGQRILTLEETLD---FIDKRVRVNIEIKGEGVAGAVFRIIKRCVEEKGWSWDDFLVSSFNHYELLEFNRL------TSRIKIGAVIAGIPIGYAECATRVNAYSLHPSKEFINQALIEDAHKRGLKVFVYTPNATEDIRQMKSMGVDGIFSDFPDRI 226
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A3R6ZVH9_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3R6ZVH9_9BACT)

HSP 1 Score: 111 bits (278), Expect = 8.080e-24
Identity = 64/230 (27.83%), Postives = 118/230 (51.30%), Query Frame = 2 
Query:  584 LNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEETGE---WIENLTLAQTRERLKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERV 1264
            L IGH+GA G+   NT+ SF +A+ LGVD+IE DV     G ++  HD  ++ T     ++ + T  + R  L         + +   L +  V + +++K      PV   + Q +    WTA+  +V++F   D  ++  F++ +PE+   R   ++ G P+  ++  + +    +    D      +AD  +RG +V+V+TVN    + ++ ++GVDGL S+YP+R+
Sbjct:    2 LKIGHRGAMGYEPENTLRSFAKALELGVDMIELDVYVCQSGELVVIHDDKVDRTTNGHGYVVDKTFTEIRSLLIAQGEKIPTLSEVFDLVDKKVPINVELKGEHTAEPVAQLIGQYIKEKDWTAEHFLVSSF---DHYELKRFKELMPEI---RVGALIAGIPIGYSKFAEEVSAYSVHLSLDFARQKYIADAHQRGFKVFVYTVNDKDDINKMKELGVDGLFSNYPDRI 225
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A0G1U833_9BACT (Glycerophosphoryl diester phosphodiesterase n=3 Tax=Candidatus Wolfebacteria TaxID=1752735 RepID=A0A0G1U833_9BACT)

HSP 1 Score: 110 bits (274), Expect = 2.980e-23
Identity = 67/235 (28.51%), Postives = 115/235 (48.94%), Query Frame = 2 
Query:  578 KALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEETGEW---IENLTLAQTR---ERLKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERV 1264
            K L  GH+GA+G+   NT+A+F +A+ LGVD++E DV     G ++  HD  ++ T      + +L L   R         V T EE+L    + +  V   +++K  E++ P    + + +   GW  D+  V  F   D   +  F +  P V   R   I+ G P+  A   + L    ++     ++ + V D   RG+QV+ W V+    +ER+  +GVDG+ S++P+R+
Sbjct:    3 KPLRFGHRGASGYFPENTLAAFQKAIDLGVDMVELDVHRCKTGEIVVMHDDTVDRTTNGYGRVADLALDALRMLDAGQGERVVTLEEVLD---MLDHRVGAVVELKEAEVIEPTAEIINRYISEKGWAVDQFSVTAF---DHYLLRTFHKLCPRV---RLGAILAGNPIGYAEFGQRLGAASVNMAHPFLTQEFVYDAHERGLQVFAWPVDEPRDIERMKSIGVDGIFSNFPDRI 228
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: A0A3A1NCX4_9FLAO (Glycerophosphodiester phosphodiesterase n=3 Tax=Muricauda TaxID=111500 RepID=A0A3A1NCX4_9FLAO)

HSP 1 Score: 109 bits (273), Expect = 4.360e-23
Identity = 67/236 (28.39%), Postives = 121/236 (51.27%), Query Frame = 2 
Query:  578 KALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEE---TGEWIENLTLAQTRERLK---HHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERVH 1267
            K L IGH+GA GH   NT+AS  +A+ LGVD+IE DV     G ++  HD  ++    +G  IE   + Q R+      H +   + +L+   L  +   L I++K  +    V H V   +++ GW+ D +++++F+  +L  +    + I      + A + +  PL      K L    ++     ++ +  A  Q  G++V+ WTVN    ++++++ GVDG+ ++YPERV+
Sbjct:    5 KPLVIGHRGAMGHETENTLASIQKALDLGVDMIEIDVFKIQSGEIVVFHDERVDRLANSGGNIEEYNIVQVRQLTLDGGHKIPLLQSVLK---LINNQTALNIELKGDDTADKVNHIVNYYIEKQGWSPDNILISSFKWDELRDMRNLNKDI------KIAVLTEEDPLEAIEVAKELNAVAINPNFRTLTKENTAKIQSEGLKVYTWTVNEPEDIQKMVEFGVDGIITNYPERVN 231
[Close]
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Match: UPI0015C0BDEF (glycerophosphodiester phosphodiesterase n=1 Tax=Galbibacter sp. BG1 TaxID=1170699 RepID=UPI0015C0BDEF)

HSP 1 Score: 110 bits (274), Expect = 5.110e-23
Identity = 76/250 (30.40%), Postives = 117/250 (46.80%), Query Frame = 2 
Query:  566 SKWRKALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDVLTTLDGVVICHHDPLIEETGEW---IENLTLAQTRERLKHHVSTFEEMLQEKALSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATF--------RQLDL------LQVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERV 1264
            S+ +K L IGH+GA GHV  N++ S  +A+ LGVD IE DV T  DG V+  HD  +E        IEN T  +  E   +   +   + Q   L +  V L I++K      PV   + + +   GW  D  ++++F        R+LD+      L  N    AIPE                   DF  L  + + +    ++ + VA+ Q RG +V+ WTVN    + ++   GV+G+ +D+PERV
Sbjct:   20 SQMKKTLTIGHRGAKGHVMENSLPSIQKAMDLGVDAIEIDVFTIADGTVVVFHDETLERLTNGNGPIENYTKKELDEIKLNGGFSIPTLQQVLDLIDKKVRLNIELKGKNTANPVHEIIQEYIVEKGWKKDDFIISSFNWEELRITRELDIDMPIGVLTSNDLVNAIPEA------------------DF--LNAEAIHSNYKILTKENVAEMQSRGFKVYTWTVNEPEAITKIKSFGVEGIITDFPERV 249
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRG7_9PHAE0.000e+086.63GP-PDE domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835YQF6_9STRA1.200e-8343.02PLC-like phosphodiesterase (Fragment) n=1 Tax=Trib... [more]
A0A4D9D615_9STRA1.380e-4834.70GP-PDE domain-containing protein n=1 Tax=Nannochlo... [more]
W7T4I9_9STRA1.770e-2640.34Glycerophosphoryl diester phosphodiesterase n=1 Ta... [more]
A0A2E0JIA8_9FLAO2.490e-2630.29Glycerophosphodiester phosphodiesterase n=2 Tax=Fl... [more]
A0A0S8IH52_9BACT1.790e-2429.06GP-PDE domain-containing protein n=1 Tax=Omnitroph... [more]
A0A3R6ZVH9_9BACT8.080e-2427.83Glycerophosphodiester phosphodiesterase n=1 Tax=Ca... [more]
A0A0G1U833_9BACT2.980e-2328.51Glycerophosphoryl diester phosphodiesterase n=3 Ta... [more]
A0A3A1NCX4_9FLAO4.360e-2328.39Glycerophosphodiester phosphodiesterase n=3 Tax=Mu... [more]
UPI0015C0BDEF5.110e-2330.40glycerophosphodiester phosphodiesterase n=1 Tax=Ga... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:154613..162234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.8
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog313596.RB2501_08620
Preferred nameugpQ
KEGG rclassRC00017,RC00425
KEGG koko:K01126
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glycerophosphoryl diester phosphodiesterase
EggNOG OGs1HYHS@117743,4NGNU@976,COG0584@1,COG0584@2
Ec32 ortholog descriptionglcerophosphoryl diester phosphodiesterase
Ec32 orthologEc-23_002410.1
EC3.1.4.46
COG Functional cat.C
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons8
Model size3834
Cds size1833
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1450.1prot_C-linearis_contig110.1450.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 154851..160471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.961663-UTR-C-linearis_contig110:154612..1548501622927474.961663-UTR-C-linearis_contig110:154612..154850Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 154613..154850 +
1690879722.769274-UTR-C-linearis_contig110:154612..1548501690879722.769274-UTR-C-linearis_contig110:154612..154850Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 154613..154850 +
1622927475.0765123-UTR-C-linearis_contig110:160471..1622341622927475.0765123-UTR-C-linearis_contig110:160471..162234Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 160472..162234 +
1690879722.8722785-UTR-C-linearis_contig110:160471..1622341690879722.8722785-UTR-C-linearis_contig110:160471..162234Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 160472..162234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.9724004-CDS-C-linearis_contig110:154850..1550261622927474.9724004-CDS-C-linearis_contig110:154850..155026Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 154851..155026 +
1690879722.781707-CDS-C-linearis_contig110:154850..1550261690879722.781707-CDS-C-linearis_contig110:154850..155026Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 154851..155026 +
1622927474.9853017-CDS-C-linearis_contig110:156024..1562221622927474.9853017-CDS-C-linearis_contig110:156024..156222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 156025..156222 +
1690879722.7945962-CDS-C-linearis_contig110:156024..1562221690879722.7945962-CDS-C-linearis_contig110:156024..156222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 156025..156222 +
1622927474.996645-CDS-C-linearis_contig110:157659..1577931622927474.996645-CDS-C-linearis_contig110:157659..157793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 157660..157793 +
1690879722.8070767-CDS-C-linearis_contig110:157659..1577931690879722.8070767-CDS-C-linearis_contig110:157659..157793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 157660..157793 +
1622927475.0107937-CDS-C-linearis_contig110:158149..1583941622927475.0107937-CDS-C-linearis_contig110:158149..158394Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 158150..158394 +
1690879722.8202653-CDS-C-linearis_contig110:158149..1583941690879722.8202653-CDS-C-linearis_contig110:158149..158394Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 158150..158394 +
1622927475.0241141-CDS-C-linearis_contig110:158630..1588581622927475.0241141-CDS-C-linearis_contig110:158630..158858Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 158631..158858 +
1690879722.8328729-CDS-C-linearis_contig110:158630..1588581690879722.8328729-CDS-C-linearis_contig110:158630..158858Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 158631..158858 +
1622927475.0386293-CDS-C-linearis_contig110:159109..1596521622927475.0386293-CDS-C-linearis_contig110:159109..159652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 159110..159652 +
1690879722.8417945-CDS-C-linearis_contig110:159109..1596521690879722.8417945-CDS-C-linearis_contig110:159109..159652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 159110..159652 +
1622927475.0526185-CDS-C-linearis_contig110:159932..1601271622927475.0526185-CDS-C-linearis_contig110:159932..160127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 159933..160127 +
1690879722.850556-CDS-C-linearis_contig110:159932..1601271690879722.850556-CDS-C-linearis_contig110:159932..160127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 159933..160127 +
1622927475.064764-CDS-C-linearis_contig110:160357..1604711622927475.064764-CDS-C-linearis_contig110:160357..160471Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 160358..160471 +
1690879722.8618994-CDS-C-linearis_contig110:160357..1604711690879722.8618994-CDS-C-linearis_contig110:160357..160471Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 160358..160471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1450.1

>prot_C-linearis_contig110.1450.1 ID=prot_C-linearis_contig110.1450.1|Name=mRNA_C-linearis_contig110.1450.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=611bp
MSDDQDQQQQQVFEEEPEDPPRPAMAMPLPEELMSSVLVFLRMKDMLEWR
VVSSSTKAMWASESQVSRVARRVSVDLHLTLSKLKAISLLAPSPRLDGTE
PVANRDVHSSKWRKALNIGHKGAAGHVDGNTMASFIEAVRLGVDVIEFDV
LTTLDGVVICHHDPLIEETGEWIENLTLAQTRERLKHHVSTFEEMLQEKA
LSESNVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLL
QVNAFRQAIPEVAKLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPD
LVADCQRRGIQVWVWTVNSMHFMERLLKMGVDGLCSDYPERVHESNKRLR
PQASQTDAATFPFPQGPGCSSGVDLRGLAEDAEAEEAAAAIEDSSGNDND
DPSPASMNSSMASMISNSSRSSGGGGGGSRSSRCGSSASSYSGSTTTNKA
EDSTDATALGGWYSRCDTCEQSAEGSDQQRLIAALYGDLAGVRDFAVRTV
EDAKVLVKVCSRAVAVQSFLTGDAMKGKRATKELAAATALCKEAETEAEQ
TLRPFVSSAETFKWSVNLISTAKGREFMSKLTRSMERDEVLPMLPFEKAF
VKDLLGMVFG*
back to top

mRNA from alignment at C-linearis_contig110:154613..162234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1450.1 ID=mRNA_C-linearis_contig110.1450.1|Name=mRNA_C-linearis_contig110.1450.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7622bp|location=Sequence derived from alignment at C-linearis_contig110:154613..162234+ (Chordaria linearis ClinC8C monoicous)
GGTCGTTGTCACATCACACGCCAGCCTTTTCCCCGATTTTCCGAGCGCTC
CAAGAGAGACATGTCTCTCTCCCTCTCGTGGGGATCCCCCCTTTTATTGT
TACAACATTGAAGGTGACCTTCGGGCTTGAAGTTATTTACTTGCCGGACG
CCCCGTGTCGTTTATCCACACTTGAGTTCCAGTTCATCAGTTAATCAGGA
GGAACGAGATCGAACCGGGTGCAGTCCTTCATAAAGGGATGTCGGACGAC
CAAGATCAACAACAACAACAAGTTTTCGAGGAAGAACCGGAGGATCCTCC
TCGCCCAGCGATGGCAATGCCCCTTCCCGAGGAGCTCATGTCCTCCGTGC
TGGTGTTCCTGCGGATGAAGGACATGCTGGAGTGGCGGGTGGTCTCGAGC
TCGACCAAAGCAATGTGAGTGTGAGAGAGCAGGAGGGAAAAGAAAGACAG
CGCGCTGTCCTCTTGTTGTTCCCACCATATGGTTGGTTCAACACCGCTCA
ACACGCTCTCCTCCTGCGTGCGTCAGCCGTACACTCCCCGAACACCACCC
CTTATGGCCCATGCCGGCGAGCCCTACCCCTTGTTGACGCATGTCGTGTG
TCTCGCAGTTCGCGCGAGTTGTGCCAGGGTTTCGTCGGACAAAAAAAGTA
CGACGAAACGTCACACAAGAAAATGCTGTGACGATGACAACATGCTGTGA
CGATGACAACAGACACACACACACACAATACAATATCCGGCTAGGCCGAA
TCTATCATTCGCCTCACATTGTGCCGGACGCCTCTCCTGCGAAGGGCGCG
CTTACCCCCAGCCCGGATGCTCTGCGGTATATTTCCGCCATTTTTGTTAC
AACTTTTTATTTCTCGGTAGAGAGCTGTACTTGTACGTGAGGGGCCGGCA
ACAAGACGCGAACTTGCCATTTTCGGATTTTCGGGCGATTGGGTTTTTCC
CCCATCTGTCATCTGTCTGTCCATCACGGAACCCGCTCTGAATAAAGCTC
CGCTTTCGGCCCCTTTGAACGTATCGTACACGTTCCTCCGCGTTGCCGCT
TATTTACGAGATCATCAGCCCATGCTGGCTGATCGCGCAAGTTTTACCTT
CAAGTGCCCCCTGCCGTTGTCTCCCAGCCATGGTGTAAATTGTAACTCAA
ATTTCCGCCTTTTTTTCCCGGCCATCTTGCACTACTTTAAAGTCGAAGAT
ATCCCGCGTGTGTTGGGTAAGGTAAGCGTTAAACCTCTCCTCTAAACACA
AGTTAGGGAGCACCGTTAGGGCCAGAATGAAAAAAATGCCGCAATCACAC
ACAGCAGTCACGCTTTCCCCTCAACCTCCAACCTTCTGCTCTCGCCACGC
ACGCGTACGTATGCTTGGCTGACTGAACCCACCCGTTGTCGGCGCCAAAC
GTCATAATGCAGGTGGGCTTCCGAGAGCCAAGTTTCTCGCGTGGCGAGGC
GAGTGTCAGTAGACCTCCACCTCACCCTTTCCAAGCTCAAGGCCATCTCG
CTGCTGGCGCCCAGCCCGAGGCTGGACGGCACGGAGCCGGTGGCCAACCG
CGACGTCCACAGCTCCAAGTGGCGCAAGGCCCTCAACATCGGCCACAAGG
GTGCTGCCGGGTAAGAAGACGACCTCAACTCGTGTACAAACACGCCCGAT
TTTTTCCTTCCAATCGCACACCCGCAATTTTACGTACCCGGGGCTTGCCT
TCCACGTTGAGATATTTTTTCCAAGGTGTGTTCGTCGATTGAAAGTGAAT
GAAGCGGAACCAGCACGTGGTCACACCCCGTGCGAACGCCGGTAGGCCGC
GCACCGCCCGTTTTCATGAAAACCATCCCGTAACAAGTGGGGGGCGGTGT
GGGTTCGGTGTGGGTACAAATACAACGATGGGTGCGAGAGGTTCGAACCA
AGCAGGTCTTACTTAAAATGAAATTGCATTAGATGGAGTACGCTTTTTGG
GGGGCGGGGCCTTCATACCCTCTTTTATGAGGTCTCGAGAAAGAATCGTA
CTTCGCTGTCGGGTCATTTCGCACCGCACGTTTTGGCGAGGGCGACAGCG
TAACCCTCAACGTTGAAGAACAAACGCAGTGAAGCCGCACGCGCTGACTC
CAATTTCCGCGTGTCCCTACAGGCAACGAAAAACGTGCATACATCTTTAC
ACAGATACAGCTATTTAGTTCATCGGTGTAGCAAGGCCTCTAGAAAGCAA
GACGGCTCTCCACGAGCGTGACAGCCCAGAAAATAGATGGAACATTATAG
TTCAGTTGCTTGTTTTTGTTTGCAGATGCCCGCGCGGAGACGGAGACATT
GGCATCACACATCACACATCACACACGCATGTTGTCTACATACCCCGATT
CTCGAGACCACCGCCCTGAAAAACGGCCTTCGCTATTGCTAGTTTTGCGG
TTGAACTGAACGCGCACGTATCGGATTCTAGGGATCCGTTGTTTGATAGC
TTCGCCCTCTTAGTTGGTGGACCGACCATCCGAGCACCGTCCGTTCAACG
TGCGCATGCATGCGCGTGAGAGGCTCCGGAAACACGACAGGGGAAATCTA
TTCGACCCCGGGGATAAATTTACATCTCACCAAATGCTGCGCGAAAATCC
TCCCGTGTTTTTTTCATTTGAGTGCGTACAGAGTACGCGTGCGCATGGTT
GCGTGCATCATATCACTACCCGCGGGTCCGGGTCCGGGTGCCCCCTTACT
TAAATCGACTCACAGCAGCCTGCCTGCCTGTGCATGGTGCTGGTGTATGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCGGGGTTGCTGTGTTTGT
CTGCCCTCGCGGTCGGACATCGGCTTGTGGGAATCGGAGGAACGGGCGAT
TGTATGGTGGCTAAGTTGAGCTGGGGCCCAGCGCCCGATCTCGATACCAC
CGAGACCCGAATGATTTGACATCTCGGAACCGAGAAGTGCATGAGAGTCT
CGACAATTCCTGAATTATACTTGTTATACTTGGTATAATATTTAAGCGCA
GTTTGTGTGTGTGTGTGTGTGTGCTTTATTCGTTCCGCGTTCCGCAGACA
CGTCGATGGCAATACGATGGCGTCCTTCATCGAGGCAGTCAGGCTAGGCG
TGGACGTGATCGAGTTTGACGTCCTCACAACGCTGGATGGCGTTGTTATC
TGCCACCACGACCCCCTCATCGAAGAAACCGGTGAGTCGCGCGCGCGCTG
ATGCCCCTCCCAAGGCGAAATCAACGAATAAACCGGGCGAAGAGTTGCTC
GTTGCGCATCCTGGTGTTCTCTCACCAGCCCCTTGCTTCTGTTGCGTATT
TATCATTTGTTTCGACCCGTAAAATTACACTATGATATTTAGAAAGCAGG
ACCGGCTTTCCGGCGGTATATAAGCGTGTAAACTCCGACGACCGTACCGC
CACCGCACCGGCGTTTATAGCCCTTTTCAAAGTCGTCCGCAAAAACTTTG
ACCTATACTCCCCTCCCTCACCCCACCATCCCCTCGCCACTTTCTTTGCC
TCGCCCCCGATCATCGCACCGGCCGAAAACAAACCAGGCGAGTGGATCGA
GAACTTGACCCTGGCGCAGACACGCGAGAGGCTCAAGCATCACGTGTCGA
CCTTCGAGGAGATGCTCCAGGAGAAAGCCCTCTCCGAGTCCAACGTGCAC
CTGTACATCGACATGAAGCACACGGAGATCGTGAGGCCGGTCCTCCACGC
GGTGATGCAGGCCGTGGACCGCTGGGGTTGGACGGCCGACAGGCTTGTCG
TCGCGACGTTCCGCCAGCTCGACCTCTTGCAGGTGAGAGAAAATAAAATG
ATGTTTCTTGTATCTACGTGACAGCAGTGCAGGTGTGTGTCGTTTTTTCG
CCTCGCGCAAGTTGGTTCATTTTACCCCCGGAGAATCTGAATCTCCCTCA
TGAGCACAACCGGGCTGCTGGAAAATGGTCGTTTCTTTTCCCCGCCTTTT
TTCTCGACGAATCGCATACTGACCGCCCCTTCAATCTCGTCTTACCCCTA
CACCCACTCGTGGAACAGGTGAACGCTTTCAGGCAAGCCATCCCGGAGGT
GGCGAAGCTCCGCACGGCGTGCATCATGGACGGCGGGCCCCTCACCCTGG
CCCGCGACTTCAAGGCCCTCAAGGTGGACATCTTGAGCACTGGCAAGGAC
CACGTGAGCCCTGACCTCGTGGCCGACTGCCAAAGGCGCGGCATCCAGGT
CTGGGTGTGGACCGTCAATAGCATGCACTTCATGGAACGCCTGCTGGTGA
GGTTTGTGTAGGAGGTCTGTCGGCTGTTTTTTTTTCTCAACTGGTCAAAA
TCAAGTGGACTTCTTACCCCGCGATTCTCTCCGTTTGCGCGTTCCCTGTG
CTCTACTGATTTGGTGACACGCGCGCATGCACATAACTATGCTTCTGCTC
GCGAGTCTCTCTTTTCGTTTTGCAGAGTTGGTCCATCCCTCTCACCTCTC
ACCTCTAACCTCTCACCTCTCAATTCTGTTCAAAATTCGATCGACAGAAA
ATGGGCGTCGACGGGCTCTGCTCGGACTACCCGGAGCGCGTGCACGAGTC
CAACAAGAGGCTCCGCCCGCAGGCCAGCCAGACGGATGCGGCGACATTCC
CGTTCCCGCAGGGACCGGGCTGTTCGTCGGGCGTGGACCTCCGGGGCCTT
GCCGAGGACGCTGAGGCAGAGGAAGCTGCCGCGGCGATCGAAGACAGCAG
CGGCAATGACAACGATGATCCGTCGCCGGCGTCCATGAACTCGTCGATGG
CGTCCATGATCAGCAACAGCAGCCGCAGCAGCGGCGGCGGCGGCGGCGGC
AGCCGCAGCAGTCGCTGCGGCAGCAGCGCCAGCAGCTACAGCGGGTCGAC
GACCACGAACAAGGCGGAGGACTCGACCGATGCCACGGCGCTCGGCGGCT
GGTACAGCCGCTGCGACACGTGCGAGCAATCGGCGGAGGGGTCCGACCAG
CAGCGGCTGATCGCCGCCCTGTACGGAGACCTGGCCGGCGTCAGGGACTT
CGCTGTCCGCACTGTAGAGGACGCGAAGGTTCTCGTCAAGGTGCGATGTG
TGTTTCGTTCTCTTGTTTGCGTCAGCCGGTTGATTGATGAGACGCGTTGT
GTTGCCGTGTTGCGTTTTTTGTCGTCCAGATTGTAGGGATCAAGCGTGAG
GTCTGGGAACTTTGCGACACGCGAGTGGACGTTGACCCAGGTACTTGTCC
GACAACGTCCAACGGCAGCTCAGCCGAGCGTTCAGCGCCAGTAGTCGTTT
GGCCCGCTCGTGACCTTTCGTCTGATCGTCCAAGCGTCTTCCATTGTTTT
GTCTCCGTTGTCTTTTACAGGTGTGCTCCCGCGCAGTGGCCGTCCAGTCT
TTCTTGACGGGCGATGCCATGAAGGGCAAGAGGGCCACGAAAGAGCTCGC
CGCCGCAACGGCGCTCTGCAAGGAAGCGGAGACCGAGGCAGAGCAGACCC
TTCGGCCTTTCGTCTCCTCCGCGGAGACGTTCAAGTGGTCCGTCAACCTC
ATTTCCACGGCGAAGGCGAGGACGGCCAACAGGAAAAAAGCGTAGACTAC
GTGCTCGCACGATTGACGAAACAAGGCGGGATGGTCGATTTTGTTTTTGC
GTTTGCTGCTTTCTCTGACTCCGTGTTGAGTATTCGGATGTAAGTTTGTG
CCGAGAAACAAGCTTCTCTCGTGACACTCAACGCTGTCCTTTCCCCCCTG
CTACCCCTCTTTCTGTTCCGCCTCTTGCTGTTCCGACTGTTTCAGGGTCG
CGAGTTCATGTCGAAGCTAACGCGGAGCATGGAGCGGGACGAGGTCTTGC
CCATGCTCCCCTTCGAGAAGGCGTTCGTGAAAGACCTCCTTGGAATGGTT
TTCGGCTGATATTCGCCGTTGCTATTTCTACATGATACACCCGGAAGAGC
CTTTTGTCGAGCTTGGTTCATTGCGTTTCCGTGGTGTGCGCACGCTACGT
GCTGATTTGCTGAAACGCGCATGTTTGCCGTTTTCGGTCTTTAGCCGAAG
TCGCTTCGTTTTATGTATGTATGGCTTGTTGGCCCGGTTCCTCTGCTGCT
GTACGAGACAGGAAGACGCGCCAATCCTTGACTCTCTTGCATCTCTCATA
CAGGAGATGGATCACCTGATTGGTTGGTCGACCGGATGTTTTTTTCTGCC
AAGAGGACACAAGTATCTTGTAGCCCGTGCAGCTCCCTTCAGTTTCCCGT
GATTTAAAAAAAAAATCTATCACGTATTCGGTTTGATTCCGAGGACGAAA
ATATTTTCATCACTGGCACACCAGCTAGACGTCCTCAAAGAGGACTGCGT
TCATCCGTTCGATAATTCACCATCGGAGGATTTTGTGTGAGATCCGATTC
TGTATCGGTGATGGGACGGTCAGGGCGAGCGGGGGGGGCGGACGGGCTGG
CTTTACACCAAGCCTTCAGGATTCAAGAGTGAAGTCACAGACCTTGAGCT
TCGCGCCACACTCAGGGTTGGTGTTTTGGGGGGCGCTTTTGTCTCTTTCG
TCAGGCGCTTTTTGAATCCCATTTGACAGATAGTAGTGGAGCGTTGCCCC
GTGCTTTTTTTCATGTGCGTTGTCTGTTTTGTGACGTCTGGCCGCGGCTC
TTTTGTGTTGCTTGTCGGTCGATAGATCCAGCTATAATAGCTTGCTTTTT
CTTTCCGTGCCGCAACGATGCTGCTGGTATGCGGAAGCAGTTTGGGTGTA
CGGTGTTGTGTTGGATGGGTTAAAGAAGCGGAGGCGCGCCGTTACGGCGC
CGTGCTCCGTGCGTTTTTGCCGGCTCTTTTCGTGCTGCGCTTATCTACGA
GTGTTGACAGGTGGGGTTAGAAAGCTCCAGGCAGCACCAGGAAATCCTCG
TTAGGTTCCGTTCCGATAGCTCGAGTGTTGCTTCTTTTCAGTATTTTACG
CCTTCCCGTTTATCAATAGAAGCTCGCCAAGTTGTTTGCTCGGCGTTCTC
GCGAAGTCGAGCCGGTCCCCCCCCCCCGACTCTTGATGTGTTTCTTTCGG
TGTTTTTTTCAACGATCGATTACAACGTGGTGTGTGATCGGGATGATTCT
CTTGGGTCGATGACTCTTGGTATTGCAGTATCTGCATGCGTGTGTGTTCG
ACGAGTTCTTACCGTGAAAGCTAGGTCTTGAGTGTTCGGTGCGAGCCATT
GGCAGCAGTTTGTCATAGTGACGTGTGTTTTCATGTAGGACGTCGAGTCC
AAAACGTGTGCACATCTCTAAGCATTCATGCAATCGGCTATATATATATG
GGAGGGCAGGGGGGAGCGGGGAAGTAAGAGAGCAAATTGGGCCTCTTTGC
GTAATATTTGGTGTTTTGTGTAATTTACATGTATTGGGAGAAGCAACCGA
ACACTCCCTAAAACGAGGAACGCTTTTGGTGCTCAAATTTCCCGATTCTA
CGACCCACAAAACCACACCGTTGATGAGGAATTGAGACTTTTTGTGTGGG
TTCTCTGGAACTTTTTCTTCCCACCAACAGTACCCGTCACTCCGAGTTCT
GTTTGTGACTGGGGCACACATACCCGAGCGCACCTCTGTGAGCTCTTGAG
GACCACCGAGACTCGCGTGAGTTCGGCAGGTAACAAAATTCAAAATTTCA
AGCCCCACCCGGGATTTCAAAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig110:154613..162234+

>mRNA_C-linearis_contig110.1450.1 ID=mRNA_C-linearis_contig110.1450.1|Name=mRNA_C-linearis_contig110.1450.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3666bp|location=Sequence derived from alignment at C-linearis_contig110:154613..162234+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGACGACCAAGATCAACAACAACAACAAGTTTTCGAGGAAGAACC
GGAGGATCCTCCTCGCCCAGCGATGGCAATGCCCCTTCCCGAGGAGCTCA
TGTCCTCCGTGCTGGTGTTCCTGCGGATGAAGGACATGCTGGAGTGGCGG
GTGGTCTCGAGCTCGACCAAAGCAATATGTCGGACGACCAAGATCAACAA
CAACAACAAGTTTTCGAGGAAGAACCGGAGGATCCTCCTCGCCCAGCGAT
GGCAATGCCCCTTCCCGAGGAGCTCATGTCCTCCGTGCTGGTGTTCCTGC
GGATGAAGGACATGCTGGAGTGGCGGGTGGTCTCGAGCTCGACCAAAGCA
ATGTGGGCTTCCGAGAGCCAAGTTTCTCGCGTGGCGAGGCGAGTGTCAGT
AGACCTCCACCTCACCCTTTCCAAGCTCAAGGCCATCTCGCTGCTGGCGC
CCAGCCCGAGGCTGGACGGCACGGAGCCGGTGGCCAACCGCGACGTCCAC
AGCTCCAAGTGGCGCAAGGCCCTCAACATCGGCCACAAGGGTGCTGCCGG
GTGGGCTTCCGAGAGCCAAGTTTCTCGCGTGGCGAGGCGAGTGTCAGTAG
ACCTCCACCTCACCCTTTCCAAGCTCAAGGCCATCTCGCTGCTGGCGCCC
AGCCCGAGGCTGGACGGCACGGAGCCGGTGGCCAACCGCGACGTCCACAG
CTCCAAGTGGCGCAAGGCCCTCAACATCGGCCACAAGGGTGCTGCCGGAC
ACGTCGATGGCAATACGATGGCGTCCTTCATCGAGGCAGTCAGGCTAGGC
GTGGACGTGATCGAGTTTGACGTCCTCACAACGCTGGATGGCGTTGTTAT
CTGCCACCACGACCCCCTCATCGAAGAAACCGACACGTCGATGGCAATAC
GATGGCGTCCTTCATCGAGGCAGTCAGGCTAGGCGTGGACGTGATCGAGT
TTGACGTCCTCACAACGCTGGATGGCGTTGTTATCTGCCACCACGACCCC
CTCATCGAAGAAACCGGCGAGTGGATCGAGAACTTGACCCTGGCGCAGAC
ACGCGAGAGGCTCAAGCATCACGTGTCGACCTTCGAGGAGATGCTCCAGG
AGAAAGCCCTCTCCGAGTCCAACGTGCACCTGTACATCGACATGAAGCAC
ACGGAGATCGTGAGGCCGGTCCTCCACGCGGTGATGCAGGCCGTGGACCG
CTGGGGTTGGACGGCCGACAGGCTTGTCGTCGCGACGTTCCGCCAGCTCG
ACCTCTTGCAGGCGAGTGGATCGAGAACTTGACCCTGGCGCAGACACGCG
AGAGGCTCAAGCATCACGTGTCGACCTTCGAGGAGATGCTCCAGGAGAAA
GCCCTCTCCGAGTCCAACGTGCACCTGTACATCGACATGAAGCACACGGA
GATCGTGAGGCCGGTCCTCCACGCGGTGATGCAGGCCGTGGACCGCTGGG
GTTGGACGGCCGACAGGCTTGTCGTCGCGACGTTCCGCCAGCTCGACCTC
TTGCAGGTGAACGCTTTCAGGCAAGCCATCCCGGAGGTGGCGAAGCTCCG
CACGGCGTGCATCATGGACGGCGGGCCCCTCACCCTGGCCCGCGACTTCA
AGGCCCTCAAGGTGGACATCTTGAGCACTGGCAAGGACCACGTGAGCCCT
GACCTCGTGGCCGACTGCCAAAGGCGCGGCATCCAGGTCTGGGTGTGGAC
CGTCAATAGCATGCACTTCATGGAACGCCTGCTGGTGAACGCTTTCAGGC
AAGCCATCCCGGAGGTGGCGAAGCTCCGCACGGCGTGCATCATGGACGGC
GGGCCCCTCACCCTGGCCCGCGACTTCAAGGCCCTCAAGGTGGACATCTT
GAGCACTGGCAAGGACCACGTGAGCCCTGACCTCGTGGCCGACTGCCAAA
GGCGCGGCATCCAGGTCTGGGTGTGGACCGTCAATAGCATGCACTTCATG
GAACGCCTGCTGAAAATGGGCGTCGACGGGCTCTGCTCGGACTACCCGGA
GCGCGTGCACGAGTCCAACAAGAGGCTCCGCCCGCAGGCCAGCCAGACGG
ATGCGGCGACATTCCCGTTCCCGCAGGGACCGGGCTGTTCGTCGGGCGTG
GACCTCCGGGGCCTTGCCGAGGACGCTGAGGCAGAGGAAGCTGCCGCGGC
GATCGAAGACAGCAGCGGCAATGACAACGATGATCCGTCGCCGGCGTCCA
TGAACTCGTCGATGGCGTCCATGATCAGCAACAGCAGCCGCAGCAGCGGC
GGCGGCGGCGGCGGCAGCCGCAGCAGTCGCTGCGGCAGCAGCGCCAGCAG
CTACAGCGGGTCGACGACCACGAACAAGGCGGAGGACTCGACCGATGCCA
CGGCGCTCGGCGGCTGGTACAGCCGCTGCGACACGTGCGAGCAATCGGCG
GAGGGGTCCGACCAGCAGCGGCTGATCGCCGCCCTGTACGGAGACCTGGC
CGGCGTCAGGGACTTCGCTGTCCGCACTGTAGAGGACGCGAAGGTTCTCG
TCAAGAAAATGGGCGTCGACGGGCTCTGCTCGGACTACCCGGAGCGCGTG
CACGAGTCCAACAAGAGGCTCCGCCCGCAGGCCAGCCAGACGGATGCGGC
GACATTCCCGTTCCCGCAGGGACCGGGCTGTTCGTCGGGCGTGGACCTCC
GGGGCCTTGCCGAGGACGCTGAGGCAGAGGAAGCTGCCGCGGCGATCGAA
GACAGCAGCGGCAATGACAACGATGATCCGTCGCCGGCGTCCATGAACTC
GTCGATGGCGTCCATGATCAGCAACAGCAGCCGCAGCAGCGGCGGCGGCG
GCGGCGGCAGCCGCAGCAGTCGCTGCGGCAGCAGCGCCAGCAGCTACAGC
GGGTCGACGACCACGAACAAGGCGGAGGACTCGACCGATGCCACGGCGCT
CGGCGGCTGGTACAGCCGCTGCGACACGTGCGAGCAATCGGCGGAGGGGT
CCGACCAGCAGCGGCTGATCGCCGCCCTGTACGGAGACCTGGCCGGCGTC
AGGGACTTCGCTGTCCGCACTGTAGAGGACGCGAAGGTTCTCGTCAAGGT
GTGCTCCCGCGCAGTGGCCGTCCAGTCTTTCTTGACGGGCGATGCCATGA
AGGGCAAGAGGGCCACGAAAGAGCTCGCCGCCGCAACGGCGCTCTGCAAG
GAAGCGGAGACCGAGGCAGAGCAGACCCTTCGGCCTTTCGTCTCCTCCGC
GGAGACGTTCAAGTGGTCCGTCAACCTCATTTCCACGGCGAAGGTGTGCT
CCCGCGCAGTGGCCGTCCAGTCTTTCTTGACGGGCGATGCCATGAAGGGC
AAGAGGGCCACGAAAGAGCTCGCCGCCGCAACGGCGCTCTGCAAGGAAGC
GGAGACCGAGGCAGAGCAGACCCTTCGGCCTTTCGTCTCCTCCGCGGAGA
CGTTCAAGTGGTCCGTCAACCTCATTTCCACGGCGAAGGGTCGCGAGTTC
ATGTCGAAGCTAACGCGGAGCATGGAGCGGGACGAGGTCTTGCCCATGCT
CCCCTTCGAGAAGGCGTTCGTGAAAGACCTCCTTGGAATGGTTTTCGGCT
GAGGTCGCGAGTTCATGTCGAAGCTAACGCGGAGCATGGAGCGGGACGAG
GTCTTGCCCATGCTCCCCTTCGAGAAGGCGTTCGTGAAAGACCTCCTTGG
AATGGTTTTCGGCTGA
back to top