mRNA_C-linearis_contig110.1447.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1447.1
Unique NamemRNA_C-linearis_contig110.1447.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:128215..128540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size327
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.9022486-CDS-C-linearis_contig110:128214..1285381622927472.9022486-CDS-C-linearis_contig110:128214..128538Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 128215..128538 +
1690879721.3675551-CDS-C-linearis_contig110:128214..1285381690879721.3675551-CDS-C-linearis_contig110:128214..128538Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 128215..128538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.9213972-UTR-C-linearis_contig110:128538..1285401622927472.9213972-UTR-C-linearis_contig110:128538..128540Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 128539..128540 +
1690879721.3766441-UTR-C-linearis_contig110:128538..1285401690879721.3766441-UTR-C-linearis_contig110:128538..128540Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 128539..128540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1447.1prot_C-linearis_contig110.1447.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 128215..128538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1447.1

>prot_C-linearis_contig110.1447.1 ID=prot_C-linearis_contig110.1447.1|Name=mRNA_C-linearis_contig110.1447.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=108bp
LFGLPIFLVLLAVVLLCCSELVRFLQRSTPIQPIIVYYVLRFCVVCCTSR
CRCCSSKTAGGRKEGRAVCVRLVSSQEKGVYFPSSVVCDDAEYKQTGCEL
FESLSVM*
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mRNA from alignment at C-linearis_contig110:128215..128540+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1447.1 ID=mRNA_C-linearis_contig110.1447.1|Name=mRNA_C-linearis_contig110.1447.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=326bp|location=Sequence derived from alignment at C-linearis_contig110:128215..128540+ (Chordaria linearis ClinC8C monoicous)
TTGTTTGGCCTTCCAATATTTCTTGTGCTTCTTGCTGTAGTATTGCTGTG
TTGTTCGGAGTTGGTGCGTTTCCTGCAGCGCAGCACTCCGATACAGCCTA
TTATAGTCTATTATGTCCTCCGTTTCTGTGTCGTCTGTTGTACGTCGCGT
TGTCGTTGTTGTTCAAGTAAAACCGCTGGAGGACGGAAGGAAGGAAGGGC
GGTTTGCGTACGACTGGTCTCCTCTCAAGAGAAGGGTGTGTACTTTCCTT
CCTCCGTTGTTTGCGATGATGCGGAGTATAAACAGACGGGGTGCGAATTA
TTCGAGAGTCTCTCCGTGATGTGAGG
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Coding sequence (CDS) from alignment at C-linearis_contig110:128215..128540+

>mRNA_C-linearis_contig110.1447.1 ID=mRNA_C-linearis_contig110.1447.1|Name=mRNA_C-linearis_contig110.1447.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at C-linearis_contig110:128215..128540+ (Chordaria linearis ClinC8C monoicous)
TTGTTTGGCCTTCCAATATTTCTTGTGCTTCTTGCTGTAGTATTGCTGTG
TTGTTCGGAGTTGGTGCGTTTCCTGCAGCGCAGCACTCCGATACAGCCTA
TTATAGTCTATTATGTCCTCCGTTTCTGTGTCGTCTGTTGTACGTCGCGT
TGTCGTTGTTGTTCAAGTAAAACCGCTGGAGGACGGAAGGAAGGAAGGGC
GGTTTGCGTACGACTGGTCTCCTCTCAAGAGAAGGGTGTGTACTTTCCTT
CCTCCGTTGTTTGCGATGATGCGGAGTATAAACAGACGGGGTGCGAATTA
TTCGAGAGTCTCTCCGTGATGTGATTGTTTGGCCTTCCAATATTTCTTGT
GCTTCTTGCTGTAGTATTGCTGTGTTGTTCGGAGTTGGTGCGTTTCCTGC
AGCGCAGCACTCCGATACAGCCTATTATAGTCTATTATGTCCTCCGTTTC
TGTGTCGTCTGTTGTACGTCGCGTTGTCGTTGTTGTTCAAGTAAAACCGC
TGGAGGACGGAAGGAAGGAAGGGCGGTTTGCGTACGACTGGTCTCCTCTC
AAGAGAAGGGTGTGTACTTTCCTTCCTCCGTTGTTTGCGATGATGCGGAG
TATAAACAGACGGGGTGCGAATTATTCGAGAGTCTCTCCGTGATGTGA
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