mRNA_C-linearis_contig110.1438.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1438.1
Unique NamemRNA_C-linearis_contig110.1438.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: D7G0U6_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U6_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 3.410e-125
Identity = 182/200 (91.00%), Postives = 192/200 (96.00%), Query Frame = 1 
Query:  220 EDDLGAGRASYGDDLDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVLVAYVIDLYEAEVPLKYRREINEEPMRRAQVEVQKMRWRVEPEEARPPDKPRLCCCITEKTIDCVFMALFTCCAKWRRRCP 819
            ED+LGAGRASYGDDLDTLDRRRTEEL+LIGE+DSANINPRRECWFIVDTKWLQ+WAKFVRGEGPPPGRISN+ LVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQ+LCR     YVIDLYEAEVPLKYRREI EEPMRRAQVEVQKMRWRVEPEEARPPDKP+LCCCITE+ IDCVFM+LFTCC+KWRRRCP
Sbjct:   59 EDELGAGRASYGDDLDTLDRRRTEELRLIGEFDSANINPRRECWFIVDTKWLQTWAKFVRGEGPPPGRISNKGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCR-----YVIDLYEAEVPLKYRREICEEPMRRAQVEVQKMRWRVEPEEARPPDKPQLCCCITERVIDCVFMSLFTCCSKWRRRCP 253
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A6U1BH02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BH02_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.370e-42
Identity = 84/205 (40.98%), Postives = 126/205 (61.46%), Query Frame = 1 
Query:  211 DINEDDLGAGRASYGDDLDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVLVAYVIDLYEAEVPLKYRREINEEPMRRAQVEVQKMRWRVEPE--EARPPDKPRLCCCITEKTIDCVFMALFTCCAKWRRRCP 819
            D  EDDLGA      ++L+ L+ RR+ EL L+ ++D   INPRRECWF++DT W++ W+ ++ G+   PGRISN  L + D +T    LV + DYRG++P +W++++E+YGKD+A  LCR     Y +D+Y   V  KYR + ++    +A+VEV  MR    PE  E    D+P +CCC+ ++ + C     FTCCA   +R P
Sbjct:   24 DAMEDDLGA---LTPEELELLEERRSAELALVSKFDKTEINPRRECWFLIDTTWIRDWSLYMEGKRDSPGRISNLNLFEADERTVKRKLVPKQDYRGLSPLMWYIFVELYGKDAAPELCR-----YSLDIYAPGVAGKYREQASKGAALQARVEVSNMREEFIPESDEESVDDEP-VCCCVYQRQLQCFLFHTFTCCAHLGKRGP 219
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A7R9U3S0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3S0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.570e-28
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1 
Query:  259 DLDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVLVAYVIDLYEAEVPLKYRREINEEPMRRAQVEVQKMRWRVEPEEARPPDKPR------LCCCITEKTIDCVFMALFTC 792
            D+D+ + RR +E++L+ E DS  ++   +CW ++ T WLQ W+ +V GEGP PG + N  L++ D  +P  GLV   DYR VN  V+ LY E+YG D    +CR     Y +DLY   V  K++      P+  A++  Q++R R E     PP +P        CCC+T   I+ +  A+FTC
Sbjct:   34 DIDS-EERRMDEMELVREADSTQLDAYEDCWVLLPTSWLQEWSAYVAGEGPRPGVVRNHELLELD-NSPKPGLVKVRDYRAVNCRVYALYAELYGTDCTPAVCR-----YEVDLYAPSVMGKFKEAALRGPLLEARIAAQEVRKRYE----YPPSEPDSDTDVICCCCVTRTCIENMLYAIFTC 206
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A7S3M225_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M225_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.330e-23
Identity = 77/215 (35.81%), Postives = 118/215 (54.88%), Query Frame = 1 
Query:  193 GQDGGRDINEDDLGAGRASYGDDLDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRG-EGPP-PGRISNEALVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVLVAYVIDLYEAEVPLKYRREINEEPMRRAQVEVQKMRWRVE------PEEARPPDKPR-LCCCITEKTIDCVFMALFTCCAKWRR 810
            G+  G+D  EDD    R+        L  R+ +ELKL+ ++D + IN  +ECWF+VD+ WL  W+ FV G +G   PG +S + L+ D    P+  L+   DYRGV P V+F++LE+YGKDS+  LCR     Y ID+Y++  P+   + +N +   RAQ ++Q  R R +       EE    D+P   CC +T++ ++       TC +  RR
Sbjct:   18 GEQKGQDDEEDDEVRERSRL------LKIRKKQELKLVKKFDKSAINVAKECWFLVDSDWLNKWSAFVNGGDGEDSPGPLSTKELL-DAQDIPLLNLMPIRDYRGVPPIVYFIFLELYGKDSSPELCR-----YQIDIYKS--PVSVAKLVNIQLTGRAQAKIQVNRVRPKWLKWDRGEEDEGEDQPLGWCCGLTKEHLEAFIYWAITCWSNRRR 218
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A6H5L668_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L668_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.250e-21
Identity = 53/88 (60.23%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:  415 PGRISNEA-LVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVLVAYVIDLYEAEVPLKYRREINEEPMRRAQVEV 675
            P  I  EA LVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQ+LCRR  +++       +  L Y      E +R   + V
Sbjct:   21 PSTIELEADLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRRACLSHCPASLRTQTSLMYGTSACFEQLRACSISV 108
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A067CS21_SAPPC (DUSP domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CS21_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 3.850e-13
Identity = 39/103 (37.86%), Postives = 52/103 (50.49%), Query Frame = 1 
Query:  271 LDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVKD------------DLKTPVDGLVSRVDYRGVNPAVWFLYLEMYG 543
             D RR EE   + ++D   I  R ECW ++D KW++ W  +    GPPPG I+NEALV D            D   P   L   VDYR V P VW  ++ ++G
Sbjct:  204 FDLRRKEEFTFLKKHDKTKI-ARGECWLVIDAKWIERWVLYAAMSGPPPGPITNEALVMDGWQERLTGAIAGDADLPRPNLKVGVDYRCVTPLVWCFFVALHG 305
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: C5K6W1_PERM5 (DUSP domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K6W1_PERM5)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-12
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  256 DDLDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVLVAYVIDLYE 606
            D  +TL  R   E + + ++D+  + P  + ++IV TKW+ SW +F+  E   PG ISN  L  DDLKT +   V   DYRG+N  +W  +L  YG          ++  + +D+Y+
Sbjct:   91 DTEETLRLRARYEAEFVRKFDTVRLPPG-DIYYIVSTKWIDSWKRFISEEKELPGPISNNLLFHDDLKTLLPRFVRSKDYRGINQRIWSFWLARYGGGP-------LITRFTLDIYD 199
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A662YFZ9_9STRA (DUSP domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFZ9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.660e-12
Identity = 46/118 (38.98%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:  262 LDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVK--------DDLKTPVD----GLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVL 579
            L+  D RR  ELKLI  +D   +   +ECWF+V+T W+  W  FV   GP PG ISN+ L++        DD     D    GL    DYR V P VW L + ++G   A  L R  L
Sbjct:  442 LEDADLRRRLELKLIMSFDRKELK-FKECWFVVNTAWMNRWVLFVGKGGPEPGPISNDELLQPGWETHLSDDTPGRADVVRSGLQLTKDYRCVAPLVWSLLVALHGSGKAPTLARYAL 558
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A7J6S9E6_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6S9E6_PEROL)

HSP 1 Score: 80.5 bits (197), Expect = 4.090e-12
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:  256 DDLDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYG 543
            D  ++L  R   E + + +YD+  + P+ + ++IV TKW+ SW  F+      PG ISN  L +DDLKT +  LV   DYRG+N  +W  +L  YG
Sbjct:   82 DTQESLRLRARYEAEFVRKYDTVRL-PQGDTYYIVSTKWINSWKHFISEGKGLPGPISNNVLFRDDLKTLLPRLVRSRDYRGINQTIWSFWLARYG 176
[Close]
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Match: A0A662Y400_9STRA (DUSP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y400_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.350e-12
Identity = 46/118 (38.98%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:  262 LDTLDRRRTEELKLIGEYDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNEALVK--------DDLKTPVD----GLVSRVDYRGVNPAVWFLYLEMYGKDSAQNLCRRVL 579
            L+  D RR  ELKLI  +D   +   +ECWF+V+T W+  W  FV   GP PG ISN+ L++        DD     D    GL    DYR V P VW L + ++G   A  L R  L
Sbjct:  396 LEDADLRRRLELKLIMSFDRKELK-FKECWFVVNTAWMNRWVLFVGKGGPEPGPISNDELLQPGWEAHLSDDTPGCADVVRSGLQLAKDYRCVAPLVWSLLVALHGSGEAPTLARYAL 512
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G0U6_ECTSI3.410e-12591.00DUSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U1BH02_9STRA8.370e-4240.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U3S0_9STRA1.570e-2836.96Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3M225_9STRA8.330e-2335.81Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5L668_9PHAE1.250e-2160.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A067CS21_SAPPC3.850e-1337.86DUSP domain-containing protein n=1 Tax=Saprolegnia... [more]
C5K6W1_PERM51.240e-1233.33DUSP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A662YFZ9_9STRA3.660e-1238.98DUSP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7J6S9E6_PEROL4.090e-1238.54Uncharacterized protein n=3 Tax=Perkinsus olseni T... [more]
A0A662Y400_9STRA4.350e-1238.98DUSP domain-containing protein n=1 Tax=Nothophytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:85171..91644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.8
Seed ortholog evalue4.2e-104
Seed eggNOG ortholog2880.D7G0U6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain in ubiquitin-specific proteases.
EggNOG OGs2BXEB@1,2S2F5@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin-specific peptidase, DUSP domain
Ec32 orthologEc-23_002250.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2095
Cds size1017
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1438.1prot_C-linearis_contig110.1438.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 86198..91593 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.9438407-UTR-C-linearis_contig110:85170..861971622927473.9438407-UTR-C-linearis_contig110:85170..86197Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 85171..86197 -
1690879722.1023867-UTR-C-linearis_contig110:85170..861971690879722.1023867-UTR-C-linearis_contig110:85170..86197Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 85171..86197 -
1622927474.0589964-UTR-C-linearis_contig110:91593..916441622927474.0589964-UTR-C-linearis_contig110:91593..91644Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 91594..91644 -
1690879722.1827345-UTR-C-linearis_contig110:91593..916441690879722.1827345-UTR-C-linearis_contig110:91593..91644Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 91594..91644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.9635932-CDS-C-linearis_contig110:86197..865091622927473.9635932-CDS-C-linearis_contig110:86197..86509Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 86198..86509 -
1690879722.1126459-CDS-C-linearis_contig110:86197..865091690879722.1126459-CDS-C-linearis_contig110:86197..86509Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 86198..86509 -
1622927473.9784164-CDS-C-linearis_contig110:87248..873321622927473.9784164-CDS-C-linearis_contig110:87248..87332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 87249..87332 -
1690879722.1219246-CDS-C-linearis_contig110:87248..873321690879722.1219246-CDS-C-linearis_contig110:87248..87332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 87249..87332 -
1622927473.9934707-CDS-C-linearis_contig110:88247..883351622927473.9934707-CDS-C-linearis_contig110:88247..88335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 88248..88335 -
1690879722.1329577-CDS-C-linearis_contig110:88247..883351690879722.1329577-CDS-C-linearis_contig110:88247..88335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 88248..88335 -
1622927474.008868-CDS-C-linearis_contig110:88627..887751622927474.008868-CDS-C-linearis_contig110:88627..88775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 88628..88775 -
1690879722.1421757-CDS-C-linearis_contig110:88627..887751690879722.1421757-CDS-C-linearis_contig110:88627..88775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 88628..88775 -
1622927474.0249226-CDS-C-linearis_contig110:89625..897411622927474.0249226-CDS-C-linearis_contig110:89625..89741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 89626..89741 -
1690879722.1579423-CDS-C-linearis_contig110:89625..897411690879722.1579423-CDS-C-linearis_contig110:89625..89741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 89626..89741 -
1622927474.0405817-CDS-C-linearis_contig110:91324..915931622927474.0405817-CDS-C-linearis_contig110:91324..91593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 91325..91593 -
1690879722.174044-CDS-C-linearis_contig110:91324..915931690879722.174044-CDS-C-linearis_contig110:91324..91593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 91325..91593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1438.1

>prot_C-linearis_contig110.1438.1 ID=prot_C-linearis_contig110.1438.1|Name=mRNA_C-linearis_contig110.1438.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=339bp
MMSEERRSVNRGIEPPAETTRGTGAAGAKTEHDVVREANGTRTDAELGQD
GGRDINEDDLGAGRASYGDDLDTLDRRRTEELKLIGEYDSANINPRRECW
FIVDTKWLQSWAKFVRGEGPPPGRISNEALVKDDLKTPVDGLVSRVDYRG
VNPAVWFLYLEMYGKDSAQNLCRRVLVAYVIDLYEAEVPLKYRREINEEP
MRRAQVEVQKMRWRVEPEEARPPDKPRLCCCITEKTIDCVFMALFTCCAK
WRRRCPRWLCCCCSSCCPSRTSASGGRYSRVTTTGGDGDDYDSELDDDDD
DVDFGAREEEDDLCRPGEGRAGRAKAGPPPPPARRNGR*
back to top

mRNA from alignment at C-linearis_contig110:85171..91644-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1438.1 ID=mRNA_C-linearis_contig110.1438.1|Name=mRNA_C-linearis_contig110.1438.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6474bp|location=Sequence derived from alignment at C-linearis_contig110:85171..91644- (Chordaria linearis ClinC8C monoicous)
AAGACAGAGACAGAGAAAGACGGGGGGGGATTGCGCACACCAAGAAGAAA
AATGATGAGTGAAGAGAGGAGGTCGGTCAATAGAGGAATAGAGCCTCCAG
CAGAAACTACGCGGGGAACCGGAGCGGCGGGGGCAAAGACGGAACACGAT
GTCGTGCGGGAAGCTAACGGTACTAGAACCGACGCAGAGCTAGGGCAAGA
CGGCGGGAGAGATATAAATGAGGACGATTTGGGAGCAGGGAGAGCGTCGT
ACGGGGACGATCTCGATACGCTCGACAGGCGGAGGACGGAGGAGCTCAAG
CTGATTGGGGAATATGACTCGTGAGTGCACAGAGTTTTGGCTCTCTCCTG
CTTGGTATACCCTCCGCAATATTCCCGCTCTCAACCCAAATATCCCGCAC
GCTACTTACAGCAGACCTACATCTGGCTTATGTGGTTTTTGCCCCAAGGA
TGGTGATCTTGAGGTTGGTAGTATCTAGCAAGTGCAACATCAAATATCTG
GCCAGAAGCCGTTGAAGGCGTACTCTACCTCGAACTGTTTTTTTTTTAAA
TCCGCCTCCGCAGCCGCCGCAGATCGACGCGGAACGGCGCGCTTTGGGCT
TTCCCCACCACAACCTGCCTGGACTTGCAAACAGAGCGTTAGCTTCACGT
AGGCGTCTCCTACGTCTCGTGCTTGCTATTTCCCAACACTCGTTGCCCCA
TCATGTGCGTAGAAAAGAGTCGGCAGAGTAAGCCTTGAAGCCTTGGGTTT
CAGAAATTCCCGTCACCCTTTCGCGGCCGGTGCGTCCTCACCCTTCCGAA
CTACAAATACCTCGCAAGGCTGATACACTAGCCCCCCCCCCCCATCATTG
GCTCCAACGCATCGCTGCATGCACGGATGTCCACCAGCATCGCTTTCGAC
GCCCGCAGAACCCAGGCTGTATTTTTCGCTCAACGCTTTTCCATGTAGCC
AGTTTTTCATCCTAACCTTGGTTGGAAAATGTTTCACCTGCATAAAGTCA
GTGGCTCTTGAACTGAAACCGTCTCTCTCTGGCTCGTGCAATCAAATTAG
GGCCCAGGATCGCGTGGCGTCTTGATGGTTGAGGGGATACCTTCCTCCCC
GATCTATCTGTCTCAGTTGCCATTGCCGTCGGGTGGCAGCCTTCCGTTGT
TTCACGACAGCTGCTCATACTGCTGTATGCGAGTTCAGTGTTTTTTTTTG
TTCGGGTTTCAGCCTGCTGTGTGGTGTGCGCATGTGTTGGGGTCGCGGGG
GGACGTAGGCAAGAAAATGAGGGGGAAGAAGGGGTGTGTGGTGTGGTGAA
CCGGAACATACGATACGACAGCAGCGGTTTCGCCGCGCGCGAAACAGGAG
AGGGGGCGTGCCTCCTCTGTGCTTACTCTCCAAGCCAGACTGCAGTAAGC
GGTAGTGGCAGCGGATAATGTACCCTCGTTGTGGTCGATTGGCTTTCAAT
CTCGACTGCTCCGCGTGAGCGTCGGGAAGACCATCAGGGCGAGGTGATAA
ACTATACGAGCGAGCGCTGTCAACACCGCACTTTCGAGCGCACTCTCGAT
TTGCCGCTATGAGCCCCCGTCACAGTCACATCTCAATCCGGGTATGTACT
CCGTATACACAAGTAGGAAGGACGCGACGAGGGGAAGAACACAAAGCGGC
GAAGTTGCCAAAGAGAGCTCCGATGGGAGCCACCGCCCTCTCTCTTTGTT
TTTGACCGAATGCTTATTGAACGGCGATTCGCCCCCCAAGTCAAACGTTT
TTGAACAGGCGAACGGCGTGTATGTGATGGTTGACCGCCAAGGCGGCAGC
CGCTCTGACACCCTACACCGAAACTCTCCCTGCCTTTTCTTGCGCGGGTT
CCGTACTGTTTCGGCAACTTCTTCTCCCTTGTCCCTCTGTCACCTCTCCC
TAGGGCGAACATCAACCCGCGCCGAGAGTGCTGGTTCATCGTGGACACCA
AGTGGCTGCAGAGCTGGGCCAAGTTCGTCCGCGGAGAGGGGCCGCCACCG
GGGCGCATCAGCAACGAAGGTGTGGCGGTGGGGTTGCCACAAAATGATGA
CGGCGGCTTGCCATGTCGTGTGCTGCCCTCTCTTGATTCAAAGTAATGTG
CGCATGATTGGGGTTGGTGTTTGCAGTGCAGTCACACTTTCTTTCCTCTT
GTGGAAGGGGGTCTCCACACAACCACCCCGTGAACGACCCGTGCGGATTT
TCGAGCCCGAATGTCGGCACTTTTTTTTTTCTTCTTTTTTTTTCCGGCGG
CGGGCGGGCAGGCAGACCTCCGCATATCTTGTTCTTGGTTCCTTTTCGTT
TTACCATCCCTTCCCCAACAATATTGGTAACAAGTAGGCGACAACGCAAC
CCTTCCACTCCACTCCAACCTAGAAAGCGACGCCCCCTACGATGCCCATG
TGCCCACCCGGTTCCTGGAGACATGCCGTTCCTGGAGACATGCCTGCCGG
GGGGCGGGCCTCTTTCGGCCGCGGTATGTTGTAGTCGTGATCAAACGCAG
AACCTCTGGGTTTCATAAACAACTTGTTTTTTTATGTAGGCCGACTATTT
GTTTTCAGCGGCCGAGTTAAGGAGGGGAGACCGGGAGACTCTGCTTTCAT
GGTCTCGTATCAAAATGCGCAGCAGAAATTTCTACTACTCGGAGTACTTC
GTACGCCCATTTCCCCCAGGGGGGCAACCCAGAAACATTTCCAACCCAGG
AAGATTTCAAGGCTGTCCTTGTCCCCCCCGCCTTTGGCCCGACCGTCCTG
GACTACACCCCCCCTGATGATTGCGTTGTATGGCTTCCGGAGCTAATTTT
ATATTCCACTGTCTGTTTCCGCACCGTGGACGACGTTGTGTGCCTGCCTG
ACGAACTTGATTTCGTCAGCCTTGGTGAAGGACGACCTCAAGACACCCGT
GGACGGCCTGGTTTCAAGAGTGGACTACCGCGGAGTGAACCCCGCGGTCT
GGTTCCTGTACCTCGAGATGTATGGGAAGGACAGCGCCCAGAATCTCTGC
AGGCGAGTACTGGTCGCGTGTTGTGGGTCGCGGTCGTCGACGTTGTTGTT
GTTGTGGGGTTGTTGGTGGTTGTTGGTGATGTTTGCCGTTAGTGTTTCGT
CGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
CGATGGTTGTTTTTTGTGATGTGGTACCGCAGGTGTTGGTTGTCCTCGTC
GTTGAGTTTCTCGAAGTAGCAGGGCAACGGAAATCTAGACCCCTCTCATT
ACTCCCGCTTACGTCCCGGCCCGGCGTTTGGAAACCCTCGGATGCGTCGT
TTGTGCCAGATACGTGATAGACCTGTATGAGGCCGAGGTGCCCCTCAAGT
ACCGGCGGGAGATCAATGAGGAGCCGATGCGAAGAGCTCAGGTGGAGGTG
AGGGAAATGCTCGTTCTGGACTTGCCGTTCTGGACTTGCCGTTCTGGACT
TGCCAGCGAACTCAAAAACACAAAGATGGAGGGGTTTGGACCGCGGGGGC
GGCGACTTGATTAGGCGGTAGGGATTCCGCCGGGCTAGAAGTTCGCCAAC
AGGCCGGACTTACGCAGCGGAGATAAGCACGCTGTTGGGTGGTCTCTGTT
CCTCTGAGCCCTTTCTTGTGCATTGCTTTTGCGATGACTGAGAAGTATAA
GTCTCTCCTGGACCCTTTCACGTGCTCGTCGCCTTTTTTGTAGCCCTGTG
GCTTTCGTCGAGATTGTTGGTGAAGCAGCTTGCGCTTTTTTACAACTGCT
TCTCGTAGATCAACATGCCCTCTGAGGCAACACGATTTCACGTACGTACA
GGTCAAGGCTGGGTTTTGATGTCAAGGTTATAGTTCGCCGTCTCTCCTTT
GTTGATGTTAATCTGCTGGGAGTAAGTTGGCTTGGCGTTGACTGCCGGCT
TCCCTCTTTCTTCTGAAGTTCGATCGGGCAGTCTAGGCCAAGCGAAAACA
GCTCAAGCCTTTGGAGTGTGCGCCAACTCTGTGTCAACCCGGAATCAGTC
CACGGAGTTGACATCTCAAGTGAAGCCCACTCGTCGGATTTGGTCGTTTT
GGTTTATTCTTGCGGTCTTCAGGCTTGTGCAAAGAAAATATTGTTTCCCC
TCGACAACAAGCTCAGGGGCGTCAACGTGCTCGTACCGCTTTTTGCGGTA
TCCACGGGGCATGGGGGGGGAGTGTTAGTGTTCTCTCTGGCATGTACTTG
GCATTCGAGGGCGCAGATTAAGCTTTGTGCTGGGCGGGTTGCCGGCATAA
GTCTACCACGTGGTTGTCGCTGAAACATGCTGTATGTGGCACCGCCTCCT
CGTTTTCCACAGGTGCAGAAGATGAGGTGGCGGGTCGAGCCCGAGGAAGC
GCGTCCGCCTGACAAGCCGCGCCTCTGCTGCTGCATCACCGAAAAGGTAT
GTATGTGCACCGAATCAGCGTGCCCCTCTTGCCACGACCTGTTGATGCGC
AACATGTTCTACATTGTTGTTCGTGGTGCCGCCGACGTCGAAGCGAATAC
TGTTATAGGCGCGACATTGGCAATACCTAGAACTGCGCGGGGTCCGTGTT
TTTTGTGCTTCGTACGGGGTTCAGTTACGGACTCGCCCCATGCCATGGGG
CACCATTTTTTCGCTCGTTCGGAATTCTTGTTGTTTTTTGCGGCCCCTGT
GCTTCTCTGCACATGCAGCGTTGAGCTGCTTTTACGTTTTGGGGCTTGCC
GTAAACAGCGCAGATGGTAGCAATTCACCGCCAACTCCCCTGGCCCTCCC
TCTCATCACAATCAGTTGGGCTGAGAAGGAAGACCCAGCAGCTTGTTGTG
GTGTACCAGTACTTTGAGGTTCCTGCGTGCGCACTTATGCATGCATGCAA
GGGATTCCCCCGAATACAGTACCGGCCTAATCATAAGAAACCTGAAATCG
GGCTCAGGCCGACTTTTTAATGGGAGGCCAGGATCGTCGCCACCATTTAT
ATAGGATTTAGTGTATTAATCGCCACGGAGCCCCCGTACTTTCTTAATTT
TGTGAAAATCTCATCAGCAGGCTGACTTTCTCGTTGCCAGTTTCTTATGA
TTGGGCCGGTACTGTAACCCTCTCGCGCGTTGTTTTGTTTGGCTCTCCTC
GCAACCCGCGTGCTCGCCGACGCCCCCCCCGCCAGACGATCGACTGCGTC
TTCATGGCGCTCTTCACCTGCTGCGCGAAGTGGCGCCGGCGCTGCCCCCG
CTGGCTCTGCTGCTGCTGCAGTTCCTGCTGCCCCAGCCGCACGAGCGCCT
CCGGCGGGCGCTACAGCCGGGTTACGACCACCGGCGGGGACGGAGACGAC
TACGACAGCGAGCTGGACGACGACGACGACGACGTCGACTTCGGCGCGAG
AGAAGAGGAAGACGACCTGTGCCGCCCCGGGGAGGGGAGAGCGGGAAGGG
CTAAGGCAGGGCCGCCACCACCGCCGGCAAGACGAAATGGTAGGTAGCCG
TCTCCGCGGGGGCAACTTTCACGCCGTCAAGTCAAGGAAGAGATGATGAG
CGCGGGGAGTCTTGCCGCAACCCCGACTTATTATAGCCGTTGAGTGTGCC
CTGCTGCAACCCCGTCTTTGAAGGCCGTGGATTGTGCCCGCATCGCTCGT
AGGACTTCAGGCCGTTCATTGCCCGATCGCGAGGGAAGGGGGGGCGGTGT
TGATATTTAGCGCTCTCAGAGTCACCGGTGGGGAGAGGGGAGAGGTGCAC
AACTCTCGGCGCGAGTGCTGGAAGGTTGATATTGCTGTTTTGATGCGTTG
GGGGAACGATTGAGGAGACAGGAGGGGTTTGGTCGGCGCGATTGCTTTTG
TTTCTCGGCGCTTCGCGGATGTCGCTACGTGTGTTGAGGTGGGTATGGAA
GAAATACAGTGTGAATGACAATATGCAAAACTGAATACTTTATTGCGTGA
AGGGGGCGCATCTGGTTTGGGCGGGTCGAGCTTGTTTGTCATCGATTTTG
TGTGGTTTGCTGATGAAACTCGGCGACAGCAGTATCGGCTACGAGGCCAA
TGTCGGGGCTCCTATTTATTGTGTATAGCAACAATATTTTTCCTGTATGA
CTACTGGAGTTGATGGGGACTGGCGCACGGGGTGCGTAAGTATGAGGCAG
CGTTGTTGAGCATTGGCTGGTGCATCTCTTACCTTTCCCCTTCATTTTAG
TGTATGCTGCAGTGCTGTTTTCCTTTTCTGCTTGCCGGTTGAACTACATA
TTATGCCCTTTGCGCAGGGCCGCCCTTTCTGAAATCGATGTTTGTGGATC
CCTGTGCAAAGGAACCACCACGTTCTCTCGGCCAATTTTTGGCGCGAGAA
TCGTGACGACGAAGAGTCGCTTCTTTGAGGTTTTAGATGTTTATCTTCCA
TGGCAAGCTTATTGAAGAACAGTTTTCAGCACTCGAACGAGAGTTGTTTT
GAGGACGGAAGCCGGTTTTGCAACCTCCCATCCTGCGAAAGAAGAGCAGC
TGCCTAACACGACAGTGTACATTA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig110:85171..91644-

>mRNA_C-linearis_contig110.1438.1 ID=mRNA_C-linearis_contig110.1438.1|Name=mRNA_C-linearis_contig110.1438.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at C-linearis_contig110:85171..91644- (Chordaria linearis ClinC8C monoicous)
ATGATGAGTGAAGAGAGGAGGTCGGTCAATAGAGGAATAGAGCCTCCAGC
AGAAACTACGCGGGGAACCGGAGCGGCGGGGGCAAAGACGGAACACGATG
TCGTGCGGGAAGCTAACGGTACTAGAACCGACGCAGAGCTAGGGCAAGAC
GGCGGGAGAGATATAAATGAGGACGATTTGGGAGCAGGGAGAGCGTCGTA
CGGGGACGATCTCGATACGCTCGACAGGCGGAGGACGGAGGAGCTCAAGC
TGATTGGGGAATATGACTCATGATGAGTGAAGAGAGGAGGTCGGTCAATA
GAGGAATAGAGCCTCCAGCAGAAACTACGCGGGGAACCGGAGCGGCGGGG
GCAAAGACGGAACACGATGTCGTGCGGGAAGCTAACGGTACTAGAACCGA
CGCAGAGCTAGGGCAAGACGGCGGGAGAGATATAAATGAGGACGATTTGG
GAGCAGGGAGAGCGTCGTACGGGGACGATCTCGATACGCTCGACAGGCGG
AGGACGGAGGAGCTCAAGCTGATTGGGGAATATGACTCGGCGAACATCAA
CCCGCGCCGAGAGTGCTGGTTCATCGTGGACACCAAGTGGCTGCAGAGCT
GGGCCAAGTTCGTCCGCGGAGAGGGGCCGCCACCGGGGCGCATCAGCAAC
GAAGGGCGAACATCAACCCGCGCCGAGAGTGCTGGTTCATCGTGGACACC
AAGTGGCTGCAGAGCTGGGCCAAGTTCGTCCGCGGAGAGGGGCCGCCACC
GGGGCGCATCAGCAACGAAGCCTTGGTGAAGGACGACCTCAAGACACCCG
TGGACGGCCTGGTTTCAAGAGTGGACTACCGCGGAGTGAACCCCGCGGTC
TGGTTCCTGTACCTCGAGATGTATGGGAAGGACAGCGCCCAGAATCTCTG
CAGGCGAGTACTGGTCGCCCTTGGTGAAGGACGACCTCAAGACACCCGTG
GACGGCCTGGTTTCAAGAGTGGACTACCGCGGAGTGAACCCCGCGGTCTG
GTTCCTGTACCTCGAGATGTATGGGAAGGACAGCGCCCAGAATCTCTGCA
GGCGAGTACTGGTCGCATACGTGATAGACCTGTATGAGGCCGAGGTGCCC
CTCAAGTACCGGCGGGAGATCAATGAGGAGCCGATGCGAAGAGCTCAGGT
GGAGATACGTGATAGACCTGTATGAGGCCGAGGTGCCCCTCAAGTACCGG
CGGGAGATCAATGAGGAGCCGATGCGAAGAGCTCAGGTGGAGGTGCAGAA
GATGAGGTGGCGGGTCGAGCCCGAGGAAGCGCGTCCGCCTGACAAGCCGC
GCCTCTGCTGCTGCATCACCGAAAAGGTGCAGAAGATGAGGTGGCGGGTC
GAGCCCGAGGAAGCGCGTCCGCCTGACAAGCCGCGCCTCTGCTGCTGCAT
CACCGAAAAGACGATCGACTGCGTCTTCATGGCGCTCTTCACCTGCTGCG
CGAAGTGGCGCCGGCGCTGCCCCCGCTGGCTCTGCTGCTGCTGCAGTTCC
TGCTGCCCCAGCCGCACGAGCGCCTCCGGCGGGCGCTACAGCCGGGTTAC
GACCACCGGCGGGGACGGAGACGACTACGACAGCGAGCTGGACGACGACG
ACGACGACGTCGACTTCGGCGCGAGAGAAGAGGAAGACGACCTGTGCCGC
CCCGGGGAGGGGAGAGCGGGAAGGGCTAAGGCAGGGCCGCCACCACCGCC
GGCAAGACGAAATGGTAGGTAGACGATCGACTGCGTCTTCATGGCGCTCT
TCACCTGCTGCGCGAAGTGGCGCCGGCGCTGCCCCCGCTGGCTCTGCTGC
TGCTGCAGTTCCTGCTGCCCCAGCCGCACGAGCGCCTCCGGCGGGCGCTA
CAGCCGGGTTACGACCACCGGCGGGGACGGAGACGACTACGACAGCGAGC
TGGACGACGACGACGACGACGTCGACTTCGGCGCGAGAGAAGAGGAAGAC
GACCTGTGCCGCCCCGGGGAGGGGAGAGCGGGAAGGGCTAAGGCAGGGCC
GCCACCACCGCCGGCAAGACGAAATGGTAGGTAG
back to top