mRNA_C-linearis_contig110.1427.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1427.1
Unique NamemRNA_C-linearis_contig110.1427.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:3296..4184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.1761482-CDS-C-linearis_contig110:3295..34511622927472.1761482-CDS-C-linearis_contig110:3295..3451Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 3296..3451 +
1690879720.9239216-CDS-C-linearis_contig110:3295..34511690879720.9239216-CDS-C-linearis_contig110:3295..3451Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 3296..3451 +
1622927472.192603-CDS-C-linearis_contig110:4085..41841622927472.192603-CDS-C-linearis_contig110:4085..4184Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 4086..4184 +
1690879720.932342-CDS-C-linearis_contig110:4085..41841690879720.932342-CDS-C-linearis_contig110:4085..4184Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 4086..4184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1427.1prot_C-linearis_contig110.1427.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 3296..4184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1427.1

>prot_C-linearis_contig110.1427.1 ID=prot_C-linearis_contig110.1427.1|Name=mRNA_C-linearis_contig110.1427.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
RSKLPEDEREAASSEGAGSGNDGESGSDKQTEKEHEFLLMDMKEEFSIFW
TQGQLGTEGPSAEHKARGIYAPGKRANGMFSYVLS
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mRNA from alignment at C-linearis_contig110:3296..4184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1427.1 ID=mRNA_C-linearis_contig110.1427.1|Name=mRNA_C-linearis_contig110.1427.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=889bp|location=Sequence derived from alignment at C-linearis_contig110:3296..4184+ (Chordaria linearis ClinC8C monoicous)
CGGTCGAAACTCCCCGAGGACGAGCGTGAGGCCGCGAGCAGCGAGGGCGC
CGGCAGCGGCAACGATGGCGAGAGCGGCAGCGACAAGCAGACAGAGAAAG
AGCACGAGTTTCTGTTGATGGACATGAAGGAGGAGTTCTCCATCTTCTGG
ACACAGGTGTGTGTGTTGCAATATAGAAAGATAGATGCTGCATTCCTGCT
CTCTCGCCTCTCGCACGATAATTGTTGTAGCATGCTTGATTTATTCCGCT
GAGCGTTCACCAGCCACGTCTTCAGACATGGTGTTGGTGCCATTCCTGTT
TTTTCCCTTCTCTCTCTTGCCATACTGCTTTCGGCAACCCGGGCGTTCTC
GAGACATTTAGTGGTAACTAAATATCGTCACCAAATATTTCGCCTCCGCA
GCGTGCGATCAGTCAGGCTCATCACATACCACATCATCCATTGCTGTCTG
TGTGAAAAAGCTTTCAGTGTACCTCAACTACTTGGTACCCGACATTTCAT
TCCCTCTCACTAGCCCTAAGCGTTAACGTCATTGAGGGCGGGGCCGCCCG
TTACGGGTGGCCCCGCCCGGGCCTTGTGAATGCTAAAATTGGAATCACGG
GTAGCCGGAGATGTTTTTGTTCATCTGAGTTGTGTCCTTTTTTGGAGAGG
TTTAACTCTCTCCCGTGTTTTGCTCGTGTTCTTTCGCGAGCGCCGATTTG
ATAGGGTATCCCTTCGTTCGCATGCTAAAAACAAGTTGGCCTTGAACACG
AATCCCTCTCCCACTTGCGGGCCTTTTTTCTGGCTCACAGGGCCAGCTTG
GCACCGAAGGCCCTAGCGCGGAACACAAGGCCCGAGGCATCTACGCACCG
GGCAAGCGGGCCAACGGCATGTTCAGCTACGTGTTGAGC
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Coding sequence (CDS) from alignment at C-linearis_contig110:3296..4184+

>mRNA_C-linearis_contig110.1427.1 ID=mRNA_C-linearis_contig110.1427.1|Name=mRNA_C-linearis_contig110.1427.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig110:3296..4184+ (Chordaria linearis ClinC8C monoicous)
CGGTCGAAACTCCCCGAGGACGAGCGTGAGGCCGCGAGCAGCGAGGGCGC
CGGCAGCGGCAACGATGGCGAGAGCGGCAGCGACAAGCAGACAGAGAAAG
AGCACGAGTTTCTGTTGATGGACATGAAGGAGGAGTTCTCCATCTTCTGG
ACACAGCGGTCGAAACTCCCCGAGGACGAGCGTGAGGCCGCGAGCAGCGA
GGGCGCCGGCAGCGGCAACGATGGCGAGAGCGGCAGCGACAAGCAGACAG
AGAAAGAGCACGAGTTTCTGTTGATGGACATGAAGGAGGAGTTCTCCATC
TTCTGGACACAGGGCCAGCTTGGCACCGAAGGCCCTAGCGCGGAACACAA
GGCCCGAGGCATCTACGCACCGGGCAAGCGGGCCAACGGCATGTTCAGCT
ACGTGTTGAGCGGCCAGCTTGGCACCGAAGGCCCTAGCGCGGAACACAAG
GCCCGAGGCATCTACGCACCGGGCAAGCGGGCCAACGGCATGTTCAGCTA
CGTGTTGAGC
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