mRNA_C-linearis_contig11.1424.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1424.1
Unique NamemRNA_C-linearis_contig11.1424.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1424.1 vs. uniprot
Match: A0A6H5JQD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD2_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.670e-45
Identity = 83/161 (51.55%), Postives = 98/161 (60.87%), Query Frame = 1 
Query:   37 LYKSWFSCGRVTDNPAKCSSSRCPRCWNDRGQNLVSTRIECSNYWTDAPPRVSAGTGTVRGGAVVDAAKKSDGLLWALDPLGADVELYFDRKAMAVQRPGAAGTCTLGRVAFFFDHVGNTFRGGGNRGASTKWVAVLEYVTAGRRQQEQLDPATGHPVMRV 519
            LY+ W+SCGR     A+CS  RC RCW  R      T   C N WT AP R S GTGTVRG  V  A   +   ++A  P G DVE++F   A+A QRPG AGTCTLG+VA+F +HVGN  +G   RG  T WVAV EYV+A   Q    D ATGHPVMR+
Sbjct:  202 LYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNRRWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATGHPVMRL 362
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BLAST of mRNA_C-linearis_contig11.1424.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.950e-43
Identity = 83/161 (51.55%), Postives = 98/161 (60.87%), Query Frame = 1 
Query:   37 LYKSWFSCGRVTDNPAKCSSSRCPRCWNDRGQNLVSTRIECSNYWTDAPPRVSAGTGTVRGGAVVDAAKKSDGLLWALDPLGADVELYFDRKAMAVQRPGAAGTCTLGRVAFFFDHVGNTFRGGGNRGASTKWVAVLEYVTAGRRQQEQLDPATGHPVMRV 519
            LY+ W+SCGR     A+CS  RC RCW  R      T   C N WT AP R S GTGTVRG  V  A   +   ++A  P G DVE++F   A+A QRPG AGTCTLG+VA+F +HVGN  +G   RG  T WVAV EYV+A   Q    D ATGHPVMR+
Sbjct:  823 LYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNRRWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATGHPVMRL 983
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BLAST of mRNA_C-linearis_contig11.1424.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.110e-39
Identity = 80/160 (50.00%), Postives = 98/160 (61.25%), Query Frame = 1 
Query:   37 LYKSWFSCGRVTDNPAKCSSSRCPRCWNDRGQNLVSTRIECSNYWTDAPPRVSAGTGTVRGGAVVDAAKKSDGLLWALDPLGADVELYFDRKAMAVQRPGAAGTCTLGRVAFFFDHVGNTFRGGGNRGASTKWVAVLEYVTAGRRQQEQLDPATGHPVMR 516
            LY +W+SCGR+    A C   +CPRCW  R       R+  SN WT AP  VS G+GT+RGG V  A  K++   W  +  G DVE+Y +R AM   +PG AGTC+L RVAFF +HVGN   G    G  T WVAV EYVTAG  Q + +D ATGHP+MR
Sbjct:  641 LYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVQIA--KTNDRQWMAES-GTDVEIYSNRDAMISNKPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKFVDAATGHPIMR 797
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BLAST of mRNA_C-linearis_contig11.1424.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.360e-19
Identity = 68/164 (41.46%), Postives = 83/164 (50.61%), Query Frame = 1 
Query:   28 LLGLYKSWFSCGRVTDNPAKCSSSRCPRCWNDRGQN-LVSTRIECSNYWTDAPPRVSAGTGTVRGGAVVDAAKKSDGLLWALDPLGADVELYFDRKAMAVQRPGAAGTCTLGRVAFFFDHVGNTFR----GGGNRGAS-TKWVAVLEYVTAGRRQQEQLDPATG 501
            L  LYK    CGR    P  C+   C  CW  RG + L +  + C N+W +AP   SAGTGT+RGG V DAA+  +  +        DVELY D  A        A T TLGR+A FF+H GN  R    G    G   T WVAV EYVT G  Q  +++  TG
Sbjct:  337 LEALYKVKLGCGREESGPL-CNDDVCAFCW--RGNSGLHNGSVTCFNHWGNAPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVELYVDTSARRSGERRQAAT-TLGRIACFFEHQGNDSRHLVDGKVQEGGEWTIWVAVKEYVTVGMGQGRKVNYPTG 496
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BLAST of mRNA_C-linearis_contig11.1424.1 vs. uniprot
Match: A0A6H5JWC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 8.230e-14
Identity = 52/127 (40.94%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:  136 LVSTRIECSNYWTDAPPRVSAGTGTVRGGAVVDAAKKSDGLLWALDPLGADVELYFDRKAMAVQRPGAAGTCTLGRVAFFFDHVGNTFR----GGGNRGAS-TKWVAVLEYVTAGRRQQEQLDPATG 501
            L +  + C N+W ++P   SAGTGT+RGG V DAA+  +  +        DV LY D  A        A T TLGR+A+ F+H GN  R    G    G   T WVAV EY+TAGR Q  +++  TG
Sbjct:  331 LHNGSVTCFNHWGNSPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVGLYVDTNARRFGEREQAAT-TLGRIAYCFEHQGNDSRHLVDGKVQEGGEWTIWVAVEEYITAGRGQGRKVNHPTG 456
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JQD2_9PHAE1.670e-4551.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYQ6_9PHAE1.950e-4351.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF97_9PHAE1.110e-3950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K975_9PHAE1.360e-1941.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWC7_9PHAE8.230e-1440.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3706952..3707473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size524
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927472.1372976-CDS-C-linearis_contig11:3706951..37074731622927472.1372976-CDS-C-linearis_contig11:3706951..3707473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3706952..3707473 +
1690879720.9134874-CDS-C-linearis_contig11:3706951..37074731690879720.9134874-CDS-C-linearis_contig11:3706951..3707473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3706952..3707473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1424.1prot_C-linearis_contig11.1424.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3706952..3707473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1424.1

>prot_C-linearis_contig11.1424.1 ID=prot_C-linearis_contig11.1424.1|Name=mRNA_C-linearis_contig11.1424.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
MLWDLLFSGLLGLYKSWFSCGRVTDNPAKCSSSRCPRCWNDRGQNLVSTR
IECSNYWTDAPPRVSAGTGTVRGGAVVDAAKKSDGLLWALDPLGADVELY
FDRKAMAVQRPGAAGTCTLGRVAFFFDHVGNTFRGGGNRGASTKWVAVLE
YVTAGRRQQEQLDPATGHPVMRVQ
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mRNA from alignment at C-linearis_contig11:3706952..3707473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1424.1 ID=mRNA_C-linearis_contig11.1424.1|Name=mRNA_C-linearis_contig11.1424.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at C-linearis_contig11:3706952..3707473+ (Chordaria linearis ClinC8C monoicous)
ATGCTTTGGGACCTGCTATTTTCGGGCCTGCTCGGCCTCTACAAGAGTTG
GTTTTCCTGTGGAAGGGTGACCGACAACCCCGCCAAGTGCAGCAGTAGTC
GCTGCCCTCGATGCTGGAACGATAGGGGCCAAAATCTCGTGAGCACGCGA
ATTGAATGCAGCAACTACTGGACCGATGCGCCGCCTCGCGTGTCCGCGGG
AACGGGCACGGTTCGGGGAGGAGCGGTGGTAGACGCCGCCAAAAAGAGTG
ACGGGCTCTTGTGGGCGCTCGACCCTTTAGGTGCAGACGTCGAGCTATAC
TTCGATCGCAAGGCCATGGCTGTTCAGCGGCCGGGGGCGGCGGGAACGTG
TACGCTTGGCAGAGTCGCTTTCTTTTTCGACCACGTCGGCAACACGTTTC
GCGGTGGTGGGAATCGGGGTGCCTCCACCAAGTGGGTTGCGGTCTTGGAG
TACGTCACTGCTGGCCGAAGGCAGCAGGAACAGCTCGACCCCGCCACAGG
TCATCCGGTGATGCGAGTGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3706952..3707473+

>mRNA_C-linearis_contig11.1424.1 ID=mRNA_C-linearis_contig11.1424.1|Name=mRNA_C-linearis_contig11.1424.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig11:3706952..3707473+ (Chordaria linearis ClinC8C monoicous)
ATGCTTTGGGACCTGCTATTTTCGGGCCTGCTCGGCCTCTACAAGAGTTG
GTTTTCCTGTGGAAGGGTGACCGACAACCCCGCCAAGTGCAGCAGTAGTC
GCTGCCCTCGATGCTGGAACGATAGGGGCCAAAATCTCGTGAGCACGCGA
ATTGAATGCAGCAACTACTGGACCGATGCGCCGCCTCGCGTGTCCGCGGG
AACGGGCACGGTTCGGGGAGGAGCGGTGGTAGACGCCGCCAAAAAGAGTG
ACGGGCTCTTGTGGGCGCTCGACCCTTTAGGTGCAGACGTCGAGCTATAC
TTCGATCGCAAGGCCATGGCTGTTCAGCGGCCGGGGGCGGCGGGAACGTG
TACGCTTGGCAGAGTCGCTTTCTTTTTCGACCACGTCGGCAACACGTTTC
GCGGTGGTGGGAATCGGGGTGCCTCCACCAAGTGGGTTGCGGTCTTGGAG
TACGTCACTGCTGGCCGAAGGCAGCAGGAACAGCTCGACCCCGCCACAGG
TCATCCGGTGATGCGAGTGCAAATGCTTTGGGACCTGCTATTTTCGGGCC
TGCTCGGCCTCTACAAGAGTTGGTTTTCCTGTGGAAGGGTGACCGACAAC
CCCGCCAAGTGCAGCAGTAGTCGCTGCCCTCGATGCTGGAACGATAGGGG
CCAAAATCTCGTGAGCACGCGAATTGAATGCAGCAACTACTGGACCGATG
CGCCGCCTCGCGTGTCCGCGGGAACGGGCACGGTTCGGGGAGGAGCGGTG
GTAGACGCCGCCAAAAAGAGTGACGGGCTCTTGTGGGCGCTCGACCCTTT
AGGTGCAGACGTCGAGCTATACTTCGATCGCAAGGCCATGGCTGTTCAGC
GGCCGGGGGCGGCGGGAACGTGTACGCTTGGCAGAGTCGCTTTCTTTTTC
GACCACGTCGGCAACACGTTTCGCGGTGGTGGGAATCGGGGTGCCTCCAC
CAAGTGGGTTGCGGTCTTGGAGTACGTCACTGCTGGCCGAAGGCAGCAGG
AACAGCTCGACCCCGCCACAGGTCATCCGGTGATGCGAGTGCAA
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