mRNA_C-linearis_contig11.1422.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1422.1
Unique NamemRNA_C-linearis_contig11.1422.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3704474..3704996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size524
Cds size504
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.3423667-UTR-C-linearis_contig11:3704473..37044921622927429.3423667-UTR-C-linearis_contig11:3704473..3704492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3704474..3704492 +
1690879694.894057-UTR-C-linearis_contig11:3704473..37044921690879694.894057-UTR-C-linearis_contig11:3704473..3704492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3704474..3704492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.3853173-CDS-C-linearis_contig11:3704492..37049961622927429.3853173-CDS-C-linearis_contig11:3704492..3704996Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3704493..3704996 +
1690879694.9042993-CDS-C-linearis_contig11:3704492..37049961690879694.9042993-CDS-C-linearis_contig11:3704492..3704996Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3704493..3704996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1422.1prot_C-linearis_contig11.1422.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3704493..3704996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1422.1

>prot_C-linearis_contig11.1422.1 ID=prot_C-linearis_contig11.1422.1|Name=mRNA_C-linearis_contig11.1422.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=168bp
MWIRVDPQAFGYCVGWRPMSGDRDFTRDDEYHFAGSSGFLCLGCRWIFND
RNTRQRHVCNEATPRSRGRRLETAQGAGSSGGSGSGAPSSTLPQAMDRSG
RSSGCGESRSSRRRSASPPTAGQRDIRRRRLMPRSSSHSSSDSDGSEQRE
RRYSSMMDQGEEKQHRVC
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mRNA from alignment at C-linearis_contig11:3704474..3704996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1422.1 ID=mRNA_C-linearis_contig11.1422.1|Name=mRNA_C-linearis_contig11.1422.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=523bp|location=Sequence derived from alignment at C-linearis_contig11:3704474..3704996+ (Chordaria linearis ClinC8C monoicous)
GTATGTACGTGACCTCTTGATGTGGATTCGAGTGGATCCTCAGGCCTTTG
GATATTGTGTGGGTTGGCGACCTATGAGTGGAGATCGAGACTTCACACGG
GATGATGAGTATCATTTTGCAGGTAGTAGTGGCTTCTTATGTTTGGGCTG
CCGCTGGATTTTCAACGACCGAAACACGCGGCAAAGACATGTATGTAACG
AGGCGACACCCAGATCCAGGGGGCGGAGGCTTGAGACAGCGCAAGGAGCC
GGTAGCAGTGGTGGCTCGGGTTCTGGTGCTCCAAGCAGCACCTTGCCGCA
AGCTATGGACCGCAGTGGCCGTAGTAGTGGGTGCGGTGAGTCTCGCTCGT
CGCGGAGACGCTCAGCTTCTCCGCCCACTGCAGGGCAGCGCGACATTCGG
CGGCGCCGCCTCATGCCACGCAGCAGCAGCCATAGTAGTAGCGATTCCGA
CGGTAGTGAGCAACGAGAGAGGCGTTACTCCAGCATGATGGACCAGGGCG
AGGAGAAGCAGCACCGTGTGTGT
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Coding sequence (CDS) from alignment at C-linearis_contig11:3704474..3704996+

>mRNA_C-linearis_contig11.1422.1 ID=mRNA_C-linearis_contig11.1422.1|Name=mRNA_C-linearis_contig11.1422.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at C-linearis_contig11:3704474..3704996+ (Chordaria linearis ClinC8C monoicous)
ATGTGGATTCGAGTGGATCCTCAGGCCTTTGGATATTGTGTGGGTTGGCG
ACCTATGAGTGGAGATCGAGACTTCACACGGGATGATGAGTATCATTTTG
CAGGTAGTAGTGGCTTCTTATGTTTGGGCTGCCGCTGGATTTTCAACGAC
CGAAACACGCGGCAAAGACATGTATGTAACGAGGCGACACCCAGATCCAG
GGGGCGGAGGCTTGAGACAGCGCAAGGAGCCGGTAGCAGTGGTGGCTCGG
GTTCTGGTGCTCCAAGCAGCACCTTGCCGCAAGCTATGGACCGCAGTGGC
CGTAGTAGTGGGTGCGGTGAGTCTCGCTCGTCGCGGAGACGCTCAGCTTC
TCCGCCCACTGCAGGGCAGCGCGACATTCGGCGGCGCCGCCTCATGCCAC
GCAGCAGCAGCCATAGTAGTAGCGATTCCGACGGTAGTGAGCAACGAGAG
AGGCGTTACTCCAGCATGATGGACCAGGGCGAGGAGAAGCAGCACCGTGT
GTGTATGTGGATTCGAGTGGATCCTCAGGCCTTTGGATATTGTGTGGGTT
GGCGACCTATGAGTGGAGATCGAGACTTCACACGGGATGATGAGTATCAT
TTTGCAGGTAGTAGTGGCTTCTTATGTTTGGGCTGCCGCTGGATTTTCAA
CGACCGAAACACGCGGCAAAGACATGTATGTAACGAGGCGACACCCAGAT
CCAGGGGGCGGAGGCTTGAGACAGCGCAAGGAGCCGGTAGCAGTGGTGGC
TCGGGTTCTGGTGCTCCAAGCAGCACCTTGCCGCAAGCTATGGACCGCAG
TGGCCGTAGTAGTGGGTGCGGTGAGTCTCGCTCGTCGCGGAGACGCTCAG
CTTCTCCGCCCACTGCAGGGCAGCGCGACATTCGGCGGCGCCGCCTCATG
CCACGCAGCAGCAGCCATAGTAGTAGCGATTCCGACGGTAGTGAGCAACG
AGAGAGGCGTTACTCCAGCATGATGGACCAGGGCGAGGAGAAGCAGCACC
GTGTGTGT
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