mRNA_C-linearis_contig11.1418.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig11.1418.1 vs. uniprot
Match: D8LKF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF9_ECTSI) HSP 1 Score: 530 bits (1366), Expect = 6.090e-179 Identity = 350/652 (53.68%), Postives = 412/652 (63.19%), Query Frame = 1
Query: 1 GTLLPSPEPQPAPIDRWARGCVVSRNTTTCDWTQSRHWGLTDVCSEEGRSLHSAKSMGTGLSGAPRHGG----HGRRRSLHSN-KKDETVIPFAIAPEAREDQSLPPWIPVEGNK-TRKGG-----KGXXXXXXXXXXXXXXXXXXXXXNNG-SEDSHRQEGDADNSLR-DDDVNSRVEELGGREWTVDGSGELLIVDRPRGDAMPKTVVSALYNFRDVNDK----EDGAAA---HTQNETGGGXXXXXXXXXXXXXXXXXSACTSVRDNKQSGSAMRRASRRRSSWRATAGRRRGSAMFFELEPTLQPNLTNSVDRPGAGVSVSDGSSFKKGPSWPEDPDHMSRSEYQERQRKQDLSDANTLDYGEDASTLGFSLGSVQSAPALGGIGLGQRGGGGVGVAGSGAEGGSGRRAVSGXXXXXXXXXSRRSITAFENVNPFAGGVRVATSMPQN------SGATAG-GDVSPLSASVEGQSGGDFFSGAGPETSSVGD-DDDPHLALVKDPEWGRNVDGPPKEAGYLPKVKHVSRERPLTHERPHTRNPRDPRNIPARKSPHVSPKGSTKNNGDKPGRGEGDDGSRSKAGMTGTSLPSSFPPLPMPLNGWGVQRVGFP-GSGGA------RGMKRHGVINMAKPKEILVEGLLR 1851
GTL PSPEP+ PIDRWARG V SR TT DW + +D SE GRSL S +S TG++ A RHG H R R S+ K+D + +PF +APE REDQSLPP IP + +RKGG +G + G SE +G D S R +DD++SR+++LGGREWT+DG+GELLIVDR +GDAMPKTVVSALYNFRDV DK E+G GG + + ++ K+S ++RRASR RRRGS FFELEPTLQPNL NS+DRPG GVSVSDG S K+GPSWP+DP+HMSRSEY+ERQR+QDL+ ++ LD GEDAS+LGFSLGSVQSAPAL G+GLG G AG G +GG XXXXXX SITAFE+VNPFAGG+RV TS P +GA+ GD+SPL+ASV GQSG FF GAGPE+SSVG+ DDPHLALVKDP+WGRNV G PKEAGYLPKVK VSRERPLTHERP+TRNPRDPRN+PAR + HVSPK ST + G + G G S SSFP LPM L GWG G G GG RG K G+I M KPKEI+V+GLLR
Sbjct: 3 GTLFPSPEPETPPIDRWARGWVASRRTTVRDWDRFPRGSSSDDGSEGGRSLRSVRSTATGMTSAHRHGXXXXXHARHRPHSSSCKEDSSGVPFPLAPEVREDQSLPPTIPGHSVRMSRKGGDSRAKRGRGGHCAKRTGANRGEGGRRQGSGGESESGCLWDGGTDGSDRQEDDLDSRLKDLGGREWTIDGAGELLIVDRVQGDAMPKTVVSALYNFRDVRDKLAGGENGGGGVXXXXXXXLDGGKRHRDGSGVGKTRGSISGSASFSKERKRSSLSLRRASRXXXXXXXXXXRRRGSGAFFELEPTLQPNLANSLDRPGPGVSVSDGGSLKEGPSWPQDPEHMSRSEYRERQRRQDLTGSSMLDGGEDASSLGFSLGSVQSAPALRGLGLGLNG---NAAAGGGRDGGXXXXXXXXXXXXXXGVGRGTSITAFEDVNPFAGGIRVDTSPPAGGDGRGAAGASGTRGDLSPLTASVGGQSG-SFFPGAGPESSSVGETSDDPHLALVKDPDWGRNVRGSPKEAGYLPKVKQVSRERPLTHERPYTRNPRDPRNVPARPNAHVSPKNSTSSR-------VGCNADPQYTGDDGGSTKSSFPSLPMSLTGWGEGGGGGSLGKGGGVPGRPMRGKKGRGMITMTKPKEIIVQGLLR 643 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1418.1 >prot_C-linearis_contig11.1418.1 ID=prot_C-linearis_contig11.1418.1|Name=mRNA_C-linearis_contig11.1418.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=618bp GTLLPSPEPQPAPIDRWARGCVVSRNTTTCDWTQSRHWGLTDVCSEEGRSback to top mRNA from alignment at C-linearis_contig11:3657313..3661836- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1418.1 ID=mRNA_C-linearis_contig11.1418.1|Name=mRNA_C-linearis_contig11.1418.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4524bp|location=Sequence derived from alignment at C-linearis_contig11:3657313..3661836- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3657313..3661836- >mRNA_C-linearis_contig11.1418.1 ID=mRNA_C-linearis_contig11.1418.1|Name=mRNA_C-linearis_contig11.1418.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3708bp|location=Sequence derived from alignment at C-linearis_contig11:3657313..3661836- (Chordaria linearis ClinC8C monoicous)back to top |