mRNA_C-linearis_contig11.1417.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1417.1
Unique NamemRNA_C-linearis_contig11.1417.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Match: A0A7S2CQY2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQY2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.470e-22
Identity = 41/85 (48.24%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:   94 SLVRTVAEEGEFSWEKCLAASTQKLLVIDCHQDWCGRCETLQPTFQRIALETTDSENRCQFLEANLDKFADRVQALLPKDSPVNL 348
            +LV+ +  E E +W++ +  S   LLV+DCHQDWCG+CETLQPTF RI ++  + E+R  FL AN+  F D+++A+LP+DS ++L
Sbjct:    7 NLVKVI--ETEEAWDEWMGKSGDMLLVLDCHQDWCGQCETLQPTFLRIFMDNDEPESRLAFLSANIKVFKDKIKAILPEDSQISL 89
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BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Match: A0A835YJ53_9STRA (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ53_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.760e-20
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:  133 WEKCLAASTQKLLVIDCHQDWCGRCETLQPTFQRIALETTDSENRCQFLEANLDKFADRVQALLPKDS 336
            W K LA+S +KL+VID HQDWCG CETLQPT  RIAL+TTD  NRC F  A++ K   +V  LL  D+
Sbjct:    1 WSKVLASSKEKLIVIDIHQDWCGPCETLQPTMHRIALDTTDCANRCGFFSASMGKLKAQVGELLSADA 68
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BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Match: A0A4Q6B0Z1_9SPHI (Thioredoxin domain-containing protein n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q6B0Z1_9SPHI)

HSP 1 Score: 73.6 bits (179), Expect = 8.100e-14
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  118 EGEFSWEKCLAASTQKLLVIDCHQDWCGRCETLQPTFQRIALETTDSENRCQFLEANLDKFADRVQALLPKDSPVNL 348
            E E  WE  +  S  KL+VIDCHQ+WCG CE + P+  R+ L+  + + R  +  A++ K   ++QA LP+D+ ++L
Sbjct:   83 EDEQQWESVVEQSESKLVVIDCHQEWCGNCEAILPSMTRVLLDYDNIDERFVYATASIGKVGAQIQAALPQDAHISL 159
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BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Match: A0A7S1CA45_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA45_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.990e-9
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   97 LVRTVAEEGEFSWEKCLAASTQKLLVIDCHQDWCGRCETLQPTFQRIALETTDSENRCQFLEANLDKFADRVQALLP 327
            LV+ +    +F  +K +  S   L+VID H+ WCGRCE +QPTF+R+ L+  +++ R +FL  +    +D  +  LP
Sbjct:   10 LVKPIESAEDF--QKWVDQSDHILVVIDVHKKWCGRCEVMQPTFERLFLDNDEADKRVKFLSLDDSVLSDEQKEALP 84
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BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Match: A0A1V9YNZ1_9STRA (Thioredoxin/dynein outer arm protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNZ1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.780e-9
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  133 WEKCLAASTQKLLVIDCHQDWCGRCETLQPTFQRIALETTDSENRCQF 276
            W      ST+KL+VID +Q+WCG C+ L+PT++RI  +T+ +E+R QF
Sbjct:   18 WNHLRENSTEKLIVIDMYQEWCGPCKVLEPTYRRIIADTSSAESRLQF 65
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BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Match: A0A067CEY6_SAPPC (Thioredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEY6_SAPPC)

HSP 1 Score: 57.0 bits (136), Expect = 5.830e-8
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  133 WEKCLAASTQKLLVIDCHQDWCGRCETLQPTFQRIALETTDSENRCQF 276
            W      +T+KL+VID +Q+WCG C+ L+PT++RI  +T  +E R QF
Sbjct:   18 WNHLRENATEKLIVIDMYQEWCGPCKVLEPTYRRIIGDTASAETRLQF 65
[Close]
BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Match: A0A8J2SPW4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPW4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.900e-5
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  145 LAASTQKLLVIDCHQDWCGRCETLQPTFQRIALETTDSENRCQFLEANLDKFADR-VQALLPKDSPVNLA 351
            L  S   L+V+D HQ+WCG C+T++PT+  I  E  + E++  F  A++     + V+ +  K S ++LA
Sbjct:   19 LEKSETVLVVMDVHQNWCGPCDTMKPTYNSIFNEIDNCEDKVAFTTADIKTLTPQLVELMATKPSDLDLA 88
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S2CQY2_9STRA1.470e-2248.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YJ53_9STRA1.760e-2058.82Thioredoxin domain-containing protein (Fragment) n... [more]
A0A4Q6B0Z1_9SPHI8.100e-1438.96Thioredoxin domain-containing protein n=1 Tax=Sphi... [more]
A0A7S1CA45_9STRA1.990e-936.36Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1V9YNZ1_9STRA3.780e-947.92Thioredoxin/dynein outer arm protein n=1 Tax=Achly... [more]
A0A067CEY6_SAPPC5.830e-845.83Thioredoxin domain-containing protein n=2 Tax=Sapr... [more]
A0A8J2SPW4_9STRA2.900e-534.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3654038..3655380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size359
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1417.1prot_C-linearis_contig11.1417.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3654038..3655311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.2602901-CDS-C-linearis_contig11:3654037..36541121622927471.2602901-CDS-C-linearis_contig11:3654037..3654112Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3654038..3654112 -
1690879720.5648239-CDS-C-linearis_contig11:3654037..36541121690879720.5648239-CDS-C-linearis_contig11:3654037..3654112Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3654038..3654112 -
1622927471.2703397-CDS-C-linearis_contig11:3654379..36544891622927471.2703397-CDS-C-linearis_contig11:3654379..3654489Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3654380..3654489 -
1690879720.5733244-CDS-C-linearis_contig11:3654379..36544891690879720.5733244-CDS-C-linearis_contig11:3654379..3654489Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3654380..3654489 -
1622927471.2821445-CDS-C-linearis_contig11:3655208..36553111622927471.2821445-CDS-C-linearis_contig11:3655208..3655311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3655209..3655311 -
1690879720.5819936-CDS-C-linearis_contig11:3655208..36553111690879720.5819936-CDS-C-linearis_contig11:3655208..3655311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3655209..3655311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.291584-UTR-C-linearis_contig11:3655311..36553801622927471.291584-UTR-C-linearis_contig11:3655311..3655380Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3655312..3655380 -
1690879720.5945346-UTR-C-linearis_contig11:3655311..36553801690879720.5945346-UTR-C-linearis_contig11:3655311..3655380Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3655312..3655380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1417.1

>prot_C-linearis_contig11.1417.1 ID=prot_C-linearis_contig11.1417.1|Name=mRNA_C-linearis_contig11.1417.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
MAPAAVDNSLVRTVAEEGEFSWEKCLAASTQKLLVIDCHQDWCGRCETLQ
PTFQRIALETTDSENRCQFLEANLDKFADRVQALLPKDSPVNLATQ
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mRNA from alignment at C-linearis_contig11:3654038..3655380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1417.1 ID=mRNA_C-linearis_contig11.1417.1|Name=mRNA_C-linearis_contig11.1417.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1343bp|location=Sequence derived from alignment at C-linearis_contig11:3654038..3655380- (Chordaria linearis ClinC8C monoicous)
GGGCGAGGAGAGAGATAGAGAGAGAGGGTTCGCACGGTCGAAGTCAACCA
ACGAATTGGCGTGCATACCATGGCACCGGCTGCAGTGGACAACTCTCTCG
TGCGCACCGTCGCTGAAGAGGGGGAGTTCTCGTGGGAGAAATGTCTCGCC
GCCAGCACGCAGAAGCTGTTGGGTAAGCGATTAGAGAAGGTTTAGCGTGC
CTTTTGCGAGCCAAATTTTACAGACAGGACAGCTACAAAACTTCCTGCTA
CATAGACTATAGCTATCGCTGACGTTCCTTTGCAAGACTCTTCTGGTGTT
AGGATCTGGAAGCATGTCTCAACCGCGTTGCTTTCCCGTTCGCATGTTGT
CTATCGAGATAAATACAGCAGTACTTACTTGTGTGTGTGTGTGTGTGTTT
TCGTCCCATTTATTTTGGCGACAGTCCCTTTCCGATCAAGGCGAGACGTG
CACTACACGTTGCGGTGTATTTAGATTACTACACTTTTCAGTGTATTTTT
CTGTACAACTAGAACCAACCGGGGTCACACAGGAGGGGGTAAACACTGGG
GCTTTTTTCTTATTTTTCTGTTTCTTTTTTGCCCCACCTTCCTGCGGTGC
TTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCACCCCTTTCCCTCGTC
AACGTGCTGAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTATGTTAT
CGCTTTCACCTGCAAAGTCGCAAAATAATCACCTTTGCTTGGAATTGAAC
TCCAGATTTTGCTGCTAGTGGGTTCGAGGTTAAACCACTAGTCCACCGGG
GCGACCGGCTAGTAGAGAGGGTCTTGTCCATCGCTGATCTACGATACCCT
TTCCTCTGTACCCGACCTTGTTGTGTGGAACGCGACTTCAGTGATCGATT
GCCACCAAGATTGGTGCGGGCGGTGTGAGACCTTGCAGCCTACATTCCAG
AGGATAGCTCTCGAGACCACAGATAGCGAAAACCGTTGCCAATTTCTGGA
GGTGAGACGACGCCAGTACGCCAGCACCACATGCATCAGCCAGCATTGAA
GCAACGCCGTGCACACTTGTTCAGGTAGACATGCTGCATTCCAGAAGTGT
GCACCCTCCTGTTTGTTCTTGTGTTTGTCAACTCTGGCACGGTGGTCCTT
CTCGCTCTTCTTTATTGCTAGCACTGCCACCTGCAAAACATAAAATATCG
GCACTCCGATCCTCAGCTTTGATGACAGAATCCGGCTCGTTTTGATATCT
TGAATGATAAAATTGAAGGCAAATCTCGACAAGTTTGCGGATCGCGTTCA
AGCTCTTCTGCCGAAGGATAGTCCAGTGAATCTCGCCACGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3654038..3655380-

>mRNA_C-linearis_contig11.1417.1 ID=mRNA_C-linearis_contig11.1417.1|Name=mRNA_C-linearis_contig11.1417.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig11:3654038..3655380- (Chordaria linearis ClinC8C monoicous)
ATGGCACCGGCTGCAGTGGACAACTCTCTCGTGCGCACCGTCGCTGAAGA
GGGGGAGTTCTCGTGGGAGAAATGTCTCGCCGCCAGCACGCAGAAGCTGT
TGGATGGCACCGGCTGCAGTGGACAACTCTCTCGTGCGCACCGTCGCTGA
AGAGGGGGAGTTCTCGTGGGAGAAATGTCTCGCCGCCAGCACGCAGAAGC
TGTTGGTGATCGATTGCCACCAAGATTGGTGCGGGCGGTGTGAGACCTTG
CAGCCTACATTCCAGAGGATAGCTCTCGAGACCACAGATAGCGAAAACCG
TTGCCAATTTCTGGAGTGATCGATTGCCACCAAGATTGGTGCGGGCGGTG
TGAGACCTTGCAGCCTACATTCCAGAGGATAGCTCTCGAGACCACAGATA
GCGAAAACCGTTGCCAATTTCTGGAGGCAAATCTCGACAAGTTTGCGGAT
CGCGTTCAAGCTCTTCTGCCGAAGGATAGTCCAGTGAATCTCGCCACGCA
AGCAAATCTCGACAAGTTTGCGGATCGCGTTCAAGCTCTTCTGCCGAAGG
ATAGTCCAGTGAATCTCGCCACGCAA
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