mRNA_C-linearis_contig11.1416.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1416.1
Unique NamemRNA_C-linearis_contig11.1416.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI)

HSP 1 Score: 466 bits (1199), Expect = 2.070e-163
Identity = 236/299 (78.93%), Postives = 258/299 (86.29%), Query Frame = 1
Query:   55 ADPGSNKSSTSTRTTKKQRKPKAQD---------STLVASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVRWEKAACLDELVLKSSKSKEIDQFL 924
            AD  +  SS S+R TK+ R+ KA+          STLV+ GDELVRISRRLHD LK + W+GTSKQPV+CSY+VLEYASETNEAYT+RYGGGRP GRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWL V+G VGRP KEH KRPV GFDC+RSEVSGTRLWGFFERRFGTAD WGD MFVYN+CPLTFMSSSG NITPDKLTPAEREVIDEACG+ALA+M+SALKPSVVV VGNFAG+KC EAVKASGL A   +  VEVVVVNHPSPASPTGV+WEKA CL+ELVL SSKSKEID+FL
Sbjct:   19 ADRKAGDSSCSSRATKQGRRLKAEGGSAGAEAGGSTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHTKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAA-GKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFL 316          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2D9TGN5_9DELT (Single-stranded DNA-binding protein n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TGN5_9DELT)

HSP 1 Score: 218 bits (556), Expect = 5.530e-67
Identity = 113/244 (46.31%), Postives = 154/244 (63.11%), Query Frame = 1
Query:  139 VASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
            +A   +L  I+ RL DRL   ++     +PVT  YD   YA   +  Y +R+G GR       +GMNPGPWGM QTGVPFGEV + RDW+GV+G +G+P  EH KRP++GF+C RSEVSG RLWG+ E+RFGTA+ + +  +V NYCPL FM  S  N  P+KL  AER+ + +AC +AL +++ AL+P +VVGVG +A  +   A+          + GV +  V HPSPASP   R W++ A
Sbjct:    1 MAPRSKLSAIADRLSDRLAELSFA----EPVTHVYDPTRYARAAHHDYLKRFGRGRK--EVVFLGMNPGPWGMAQTGVPFGEVSYARDWMGVKGRIGKPEVEHPKRPIEGFECARSEVSGRRLWGWAEQRFGTAEAFFERFYVANYCPLVFMEESARNRVPEKLPVAERQPLLDACDEALVEVIEALQPELVVGVGAWARKRAEAAL---------GDLGVRIGQVLHPSPASPRANRGWQEQA 229          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2A2QJU9_9BACT (Single-stranded DNA-binding protein n=1 Tax=Verrucomicrobiae bacterium Tous-C5FEB TaxID=1982331 RepID=A0A2A2QJU9_9BACT)

HSP 1 Score: 218 bits (554), Expect = 1.040e-66
Identity = 118/239 (49.37%), Postives = 152/239 (63.60%), Query Frame = 1
Query:  154 ELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
            +L+  +RRL   L G  +       V C Y+ LEYA + +EAY  RYG G+   R   +GMNPGP+GM QTGVPFGEV  VRDWLG+  +V +P KEH KRP++GF CKRSEVSG RLWG F  RFG AD++    FV NYCPL +MS++G+N+TPDKL  +E + +++AC   LA ++  L PS ++GVG FA  + + A  A G       S   V  V HPSPASP   R W +AA
Sbjct:    3 KLIASTRRLVSDLAGLEFGDL----VACVYNPLEYAWQAHEAYLSRYGSGKK--RVLFLGMNPGPFGMAQTGVPFGEVDAVRDWLGICEDVEKPLKEHPKRPIEGFACKRSEVSGRRLWGLFAERFGKADSFFKEHFVMNYCPLVWMSTTGANLTPDKLPASEMQPVEQACLKHLAKVIELLDPSYLIGVGGFAEDRLIRAAAACG-------SKATVGRVLHPSPASPAANRGWAEAA 228          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT)

HSP 1 Score: 216 bits (549), Expect = 6.490e-66
Identity = 115/244 (47.13%), Postives = 153/244 (62.70%), Query Frame = 1
Query:  139 VASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
            +++  +L+  +RRL D L   T+      PV C Y  L+YA   ++ Y  RYG G    R   +GMNPGP+GM QTGVPFGEV  VRDWL +   V +P  EH KRPV+GF+C RSEVSG RLWG F  RFGTAD +  + FV NYCPL +MS++G+N+TPDKL  AE   +++AC   LA+++  LKPS ++G+G FA  + + A + SG       S   +  + HPSPASP   R W +AA
Sbjct:    1 MSAATDLIASTRRLCDALGDLTFAA----PVACVYRPLQYAWRPHQRYLERYGRGPK--RVVFLGMNPGPFGMAQTGVPFGEVAAVRDWLEIHEPVDKPAGEHPKRPVEGFNCTRSEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDKLPAAEMAPVEDACLAHLAEVIGLLKPSFLIGIGGFAEQRLLRAAETSG-------SKAAIGRILHPSPASPAANRGWAEAA 231          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A3N5QI00_9GAMM (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5QI00_9GAMM)

HSP 1 Score: 214 bits (545), Expect = 2.220e-65
Identity = 113/237 (47.68%), Postives = 145/237 (61.18%), Query Frame = 1
Query:  157 LVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKA 864
            LV +SR L +R+    +      PV C Y+ LEYA   +E Y  RYGGG       ++GMNPGP+GM QTGVPFG+V  VRDWLG+   V RPR EH KRPV GFDC R+E+SGTRLWG+   RFGT   + +  FV NYCPL F+++SG+N+TPDKL  AE+  +  AC +AL  +V  L+P +V+GVG FA  +   A+    +  G          + HPSPASP   R W  A
Sbjct:    3 LVDVSRALSERVASLRFA----DPVCCVYNPLEYARAPHELYLSRYGGGPK--EVLLLGMNPGPFGMAQTGVPFGDVTMVRDWLGIVAPVARPRDEHPKRPVLGFDCHRTEISGTRLWGWARDRFGTPQRFFERFFVANYCPLAFVAASGANLTPDKLPAAEQRAVSSACDEALRAVVRLLRPQIVIGVGGFAERRARAALGGENIAIG---------TILHPSPASPLANRGWAGA 224          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2W4L8P9_9PROT (Single-stranded DNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L8P9_9PROT)

HSP 1 Score: 213 bits (543), Expect = 4.450e-65
Identity = 110/205 (53.66%), Postives = 136/205 (66.34%), Query Frame = 1
Query:  226 PVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASP 840
            PVT  Y+ L+YA E +E Y  RYG GR    A  +GMNPGP+GM QTGVPFGEV  VRDWL + G+VG+P  EH KRPV GFDC RSEVSG+R+WG+    FGT + + +  FV NYCPL FM +SG N+TPDKL  AERE +  AC  AL  M+   +P  V+GVGNFA A+  EA++ +G+  G          + HPSPASP
Sbjct:   21 PVTHVYNPLQYAREPHERYLERYGQGRK--EAVFLGMNPGPFGMAQTGVPFGEVRIVRDWLKIEGKVGKPPVEHPKRPVQGFDCPRSEVSGSRIWGWVRDTFGTPERFFERFFVANYCPLVFMEASGRNLTPDKLPRAEREPLFAACDRALRRMMEIWQPRWVIGVGNFAEARAREALEGTGISVGR---------ILHPSPASP 214          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A831XLZ5_GEOME (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Geobacter TaxID=28231 RepID=A0A831XLZ5_GEOME)

HSP 1 Score: 213 bits (541), Expect = 9.190e-65
Identity = 121/238 (50.84%), Postives = 143/238 (60.08%), Query Frame = 1
Query:  157 LVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
            LV I+  L   L G ++      PV C Y+ L YA E + AY  R+G   P     +VGMNPGPWGM QTGVPFGE+G V +WLGV G V RP  EH K+ VDGF C+RSEVSG RLWG    RFGT + +    FV NYCPL F++  G NITPDKL   E+E +  AC  AL   V  L+P VVVGVG FA  +C EA+  +GL        VEV  + HPSPASP   R W  AA
Sbjct:    4 LVNIADTLAADLAGLSF----STPVACVYNPLVYAREPHAAYLSRFGS--PPKEVLIVGMNPGPWGMAQTGVPFGEIGVVAEWLGVTGTVTRPADEHPKKRVDGFACRRSEVSGRRLWGLVRERFGTPERFFARFFVANYCPLLFLTVDGGNITPDKLRRGEQEPLFAACDRALRRTVDLLRPRVVVGVGGFAEGRCREAL--AGLN-------VEVGRIIHPSPASPAANRDWAGAA 226          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4)

HSP 1 Score: 213 bits (541), Expect = 1.080e-64
Identity = 116/242 (47.93%), Postives = 154/242 (63.64%), Query Frame = 1
Query:  145 SGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
            S   L+  SRRL   L G  +      PV+ +Y+ LEYA   +E Y  +YG G+   R   +GMNPGP+GM QTGVPFGE+  VRDW+G+   VG+P  EH KRP++GF C +SEVSG RLWG F  RFGTA+ +  + FV NYCPL +MSS+G+N+TPDKL+ AE E +++AC   LA+++  L+P  +VGVG FA  +   A   +G   G+ + G     V HPSPASP   R W +AA
Sbjct:    2 SAAALIDSSRRLESALHGARF----SPPVSHAYNPLEYARVPHELYLSKYGKGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVRDWMGIEAPVGKPVPEHLKRPIEGFACPKSEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDKLSSAEMEPVEQACLAHLAEVIGILQPEWLVGVGAFAEERLRRAAAKAG---GEFKIGR----VLHPSPASPAANRGWSEAA 230          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A399HZ39_9DELT (Single-stranded DNA-binding protein n=1 Tax=Geobacter sp. TaxID=46610 RepID=A0A399HZ39_9DELT)

HSP 1 Score: 212 bits (539), Expect = 1.780e-64
Identity = 118/242 (48.76%), Postives = 144/242 (59.50%), Query Frame = 1
Query:  136 LVASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WE 858
            L+   DELV    RLH              PV   Y+ L YA + +E Y RRYG   P    FV GMNPGPWGM QTGVPFGE+  VRDWLG+ G VGRP +E+ K+ V GF C+RSEVSG RLWG    R+GT + + D  FV NYCPL F+ + G N+TPDKL  AER+ ++ AC  AL   V  L+PS V+GVGNFA  + V A+  SG+  G          + HPSPA+P   R WE
Sbjct:    3 LLKVTDELVAELGRLH-----------FAPPVAHVYNPLVYARQPHEEYLRRYGN-VPKETVFV-GMNPGPWGMAQTGVPFGEISAVRDWLGIDGTVGRPAEEYPKKLVTGFACRRSEVSGRRLWGLIRSRYGTPERFFDRFFVLNYCPLLFLDTDGRNLTPDKLRSAERDTLNAACDRALRRQVELLRPSCVIGVGNFAADQVVRALAGSGIRVGR---------ILHPSPANPAANRGWE 222          
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2A4P0Q3_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A4P0Q3_9BACT)

HSP 1 Score: 212 bits (539), Expect = 1.780e-64
Identity = 115/239 (48.12%), Postives = 147/239 (61.51%), Query Frame = 1
Query:  154 ELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
            E++ I+RRL   +    +     +P+T  Y+ L+YA + +E Y RRY   RP  +A ++GMNPGPWGM QTGVPFGEV  VR+WL + GEV +P K H KRP+ G +C RSEVSG RLW +   RF +AD + DN FV+N+CPL FM  SG N TPDKL  AERE + +AC  AL   V ALKP +VVGVG FA  +    + A  +         E+  + HPSPASP   R W   A
Sbjct:    2 EVIDIARRLSREVSNLKF----SEPITHVYNPLDYAWDLHEQYLRRYS--RPGVKAILLGMNPGPWGMAQTGVPFGEVTHVREWLKLDGEVKQPAKIHPKRPIQGLNCHRSEVSGRRLWSWARERFSSADHFFDNFFVFNWCPLCFMEESGRNRTPDKLPAAEREPLQQACDRALVASVRALKPGMVVGVGKFARDQAARILAAEDI---------EIGQILHPSPASPIANRGWAPQA 225          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKH1_ECTSI2.070e-16378.93Uracil-DNA glycosylase superfamily protein n=2 Tax... [more]
A0A2D9TGN5_9DELT5.530e-6746.31Single-stranded DNA-binding protein n=1 Tax=Sandar... [more]
A0A2A2QJU9_9BACT1.040e-6649.37Single-stranded DNA-binding protein n=1 Tax=Verruc... [more]
A0A3N5VL41_9BACT6.490e-6647.13Single-strand selective monofunctional uracil-DNA ... [more]
A0A3N5QI00_9GAMM2.220e-6547.68Single-strand selective monofunctional uracil-DNA ... [more]
A0A2W4L8P9_9PROT4.450e-6553.66Single-stranded DNA-binding protein n=1 Tax=Proteo... [more]
A0A831XLZ5_GEOME9.190e-6550.84Single-strand selective monofunctional uracil-DNA ... [more]
UPI001B8AC5B41.080e-6447.93single-stranded DNA-binding protein n=1 Tax=Luteol... [more]
A0A399HZ39_9DELT1.780e-6448.76Single-stranded DNA-binding protein n=1 Tax=Geobac... [more]
A0A2A4P0Q3_9BACT1.780e-6448.12Single-stranded DNA-binding protein n=1 Tax=Planct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3649366..3652965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score466.1
Seed ortholog evalue1.3e-128
Seed eggNOG ortholog2880.D8LKH1
Preferred nameSMUG1
KEGG koko:K10800
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0017065,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031974,GO:0031981,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045008,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0097159,GO:0097506,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576
EggNOG free text desc.single-strand selective uracil DNA N-glycosylase activity
EggNOG OGs28KKK@1,2QT20@2759
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-16_002940.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons7
Model size930
Cds size930
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.1067781-CDS-C-linearis_contig11:3649365..36495611622927471.1067781-CDS-C-linearis_contig11:3649365..3649561Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3649366..3649561 +
1690879720.4808874-CDS-C-linearis_contig11:3649365..36495611690879720.4808874-CDS-C-linearis_contig11:3649365..3649561Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3649366..3649561 +
1622927471.1541572-CDS-C-linearis_contig11:3649956..36501171622927471.1541572-CDS-C-linearis_contig11:3649956..3650117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3649957..3650117 +
1690879720.501982-CDS-C-linearis_contig11:3649956..36501171690879720.501982-CDS-C-linearis_contig11:3649956..3650117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3649957..3650117 +
1622927471.1661034-CDS-C-linearis_contig11:3650461..36505931622927471.1661034-CDS-C-linearis_contig11:3650461..3650593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3650462..3650593 +
1690879720.5195436-CDS-C-linearis_contig11:3650461..36505931690879720.5195436-CDS-C-linearis_contig11:3650461..3650593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3650462..3650593 +
1622927471.1842694-CDS-C-linearis_contig11:3651014..36510781622927471.1842694-CDS-C-linearis_contig11:3651014..3651078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3651015..3651078 +
1690879720.5294487-CDS-C-linearis_contig11:3651014..36510781690879720.5294487-CDS-C-linearis_contig11:3651014..3651078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3651015..3651078 +
1622927471.1989186-CDS-C-linearis_contig11:3651534..36516071622927471.1989186-CDS-C-linearis_contig11:3651534..3651607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3651535..3651607 +
1690879720.5377991-CDS-C-linearis_contig11:3651534..36516071690879720.5377991-CDS-C-linearis_contig11:3651534..3651607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3651535..3651607 +
1622927471.212008-CDS-C-linearis_contig11:3652009..36521361622927471.212008-CDS-C-linearis_contig11:3652009..3652136Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3652010..3652136 +
1690879720.5460622-CDS-C-linearis_contig11:3652009..36521361690879720.5460622-CDS-C-linearis_contig11:3652009..3652136Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3652010..3652136 +
1622927471.2224271-CDS-C-linearis_contig11:3652788..36529651622927471.2224271-CDS-C-linearis_contig11:3652788..3652965Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3652789..3652965 +
1690879720.555227-CDS-C-linearis_contig11:3652788..36529651690879720.555227-CDS-C-linearis_contig11:3652788..3652965Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3652789..3652965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1416.1prot_C-linearis_contig11.1416.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3649366..3652965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1416.1

>prot_C-linearis_contig11.1416.1 ID=prot_C-linearis_contig11.1416.1|Name=mRNA_C-linearis_contig11.1416.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=310bp
MPSTKRGSAAMAKRSSRTADPGSNKSSTSTRTTKKQRKPKAQDSTLVASG
DELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGG
GRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHA
KRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSS
SGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCV
EAVKASGLGAGDSESGVEVVVVNHPSPASPTGVRWEKAACLDELVLKSSK
SKEIDQFLL*
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mRNA from alignment at C-linearis_contig11:3649366..3652965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1416.1 ID=mRNA_C-linearis_contig11.1416.1|Name=mRNA_C-linearis_contig11.1416.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3600bp|location=Sequence derived from alignment at C-linearis_contig11:3649366..3652965+ (Chordaria linearis ClinC8C monoicous)
ATGCCGTCTACGAAGCGAGGCTCTGCAGCAATGGCGAAGCGTTCGAGCAG GACGGCCGATCCAGGCAGCAACAAGAGCAGCACGAGCACCAGGACGACCA AGAAGCAGAGGAAGCCGAAAGCACAAGACTCTACGCTTGTGGCGAGTGGA GATGAGTTGGTGCGGATATCACGTCGGCTTCATGACAGGCTGAAAGGTGA GGGAGAAGGTGCCGCCCTCCATGCATACAGCTTCACTTCGGAACGCTGCT GCATAAACTATGTACTGGTACCATATGTACACTTGGTTAAAAATTCAAAT TCTGGCGTCATCAACCACAGATTGCACCGCCGTACATGTATGGGAGCGCA TTTGTTCGTGCCAGCTAAAAAACGAGCAGCTGGGATATTTGCGTACATAG TTTCCCAGGTTCGACACGGCTCCAGGGTCAACTTGGTGCTGTGAATGCCT TGAGTTTCTAGATTACAGGAGTTTTGAGTTGGTTCACGCAGCGCCGAGAG CCTGTTTGCTGTACACACCTGTTGCACTTACCCCGCGATCAACACCGCAA CGCCCCCCGCCACTTGCTTGGTTGGATCAAACAATCCCAAGGCCAGACTT GGCGGGGCACGAGTAAGCAGCCGGTGACCTGCTCGTACGATGTCCTGGAG TACGCCTCCGAGACGAACGAGGCCTACACGCGGCGGTACGGGGGGGGTCG CCCGCTCGGGAGAGCCTTTGTCGTTGGGATGAATCCGGGCCCGTGGGGCA TGGTGAGTGTATGTATTGCTGCACAGCATGATACGCATCACAACGCAAAT GATGCTGTTTTTGCAATCTTTCGCCTTTGCATCTTGAAGCTTGAGCCGTG TATATCTTGCAAACACAGAGTGCCACCCCGAATACATGCTCCACAATCAA ACCGCGCGTTTATGTGTTTCATACATTGGAACACAAAGGTTGACCTGCGC CCCTTTTGAGGTATCCTACGTACTGTAGCACTTACATTCACAAGGCACCG CGCGGAAACGTGTCGCGCTGTTTCATTCACCGCCTTGTCGCCTTACGTAT CCGTGCGTTCGCCTCGTTGGTTGTACGGTGCCGTATCACATCACAGGTGC AAACAGGAGTTCCATTCGGCGAGGTAGGCTTCGTCAGGGACTGGCTGGGG GTACGAGGGGAAGTGGGCCGCCCGCGAAAGGAGCACGCCAAGCGGCCGGT GGATGGGTTCGACTGTAAGCGCAGCGAGGTTTGTTTTTGGCGTTTCTGCC TGTTCGCGGCGTCGATCACGTCGCGCGAGGAAACCTCACCAGTGACGTGG AGTCGCACAGAGTTGGTACTTTTTTGGGCACACCATTTGCGACCTACTGT CTGTACACGCACGGTGTTCGCTGAAGGAGTGGAGACCCGTGTGTGGCTTC TGTTGGACGCTCGGTCGCCCCCTGTTCTTTCTGCTTTTCTTCACACGCGT GTGGGGGCTGTCTTGTTCTGTTTTAATGCCGGCGCGCCCTTCAATTCTCT TGGGCTCTCTCAATGCTCTGGCAAGCCGCGGAGTTTGATCATGTGTGCAG CTTTGACTTGAGCGTGATCATGTGTGCAGCTAGCTTACTTGAGCGTCATG CCTGCCCGTCTGCGGCACGGTCGCTTGCTTATGCCGCGTGAAAATCCAGG TTAGCGGGACACGCCTGTGGGGATTTTTCGAGCGCAGGTTCGGAACGGCG GACACCTGGGGAGGTACGTGTGCGTGGGTGCTTGTTTGTGTGCTTGTGCG TGTGTATCACTGGGGCGGGTTTAACCGAAAAAACGCCATTCTTGTCGATT AAAACCAGCACTTTCTTTCCGAACGGCAGTCTTGGCATCCACGTGTGTGC AGCCCACCTGTCAACAGCGTTTTTTTCTTCATCCGTCTACCTGTACATTA CTTTCTTTTGTCTGTTCCTGCGTTCTGACATTGCATCTACATGGCCGCCA TAAAGTGAAGTGGGTTTGTCGAAGCACTTGGCTTGCTCGCCTACAGCGTG TCTCGTCGTCTGTTCCCACTTCAAATACTCTTGTGCCCCCAAGACCGCGA GCTTAATGCTACCCTCTCTCCATCCCCCCCTCCCCCCTCCCCCCTCCCCC CTGTCCTCCCTCCCCTTCGCCGCGGAATGCTCTTGGCCTGCCTTGTGTCA TTGTTCGAGAATAACACAGACAATATGTTCGTCTACAACTACTGCCCGTT GACCTTCATGAGCTCCTCGGGCAGCAACATCACCCCCGATAAGTACGTTC CGGCGGCCGTCCGTTGGTACAAATATGTGGCCTGTTGGTTTGCTGGAAGA TTTCCGCGGGCCGTTTCCCACGGAGCGTCTGTTTTGGGAAACGCGGATGC CCGTGGGCCCTTGATGCCGCCTACCATGTGCGTGATCTGTCATTTCCTCA CGTGGTTTCGAAATCCCGTGTTGCCTTGTCCTTGACGTGTACATCGTAGC TCGACAAGGTTATTGGCTCGGCCCAAGTTGATACGGCACGTGCGCACTCC GTACTTTGGTTCAACATGAAGCCTTTTGAAAGATTTTGTCATGTTCAACT TCTGCAACGCCCCGCCCCCCCCTGCGCGCGCTCCCACCACGGTTTGTTTT GTTTTGGTCTCTCTCGTTTCTCGGCACCACCGACATGGGAGCAGGTTGAC TCCCGCGGAGCGCGAGGTTATCGACGAGGCCTGCGGCGACGCCCTCGCGG ACATGGTGTCGGCGCTCAAGCCGTCGGTGGTTGTGGGAGTCGGGAATTTC GCGGGGGCCAAGTGCGTTGAGGTGAGAAGAGAAGCGGTGTTTGTTGGCCA AACCCGGAGGGCACCGCGAGTCGGGAATTTTTACGGGGGCCAAGTGCCTT GAGGCGACAAGAGAGGCGGCCGTTGTCGACCGACCCCTCGAACGGAATGG CAACGCGCAAGTCGACGCGCCGTGGCGGCCTTTCGGACGAGAGAAGTGCG CACGAACTGGCGGGGGCAGGCAGGTTCTTTTCGGAGTCGGTGTGGCGGGG GAACATCGTGCCGGGTTCCAAACCCGAACAAACTTTCGCAGGAGAAGGCG GGTTTCAAGTCTAGAGTTTTGCGACACGACCATTCGACTAGTCACACGAA GGAAACCGAGGTCTACAACATGCCAAATGTGGTCGAACACTCGAACCTTC CCGGACGGCACAGCTGACGTCTTGGCCGATTGGATGCGCATGTTTGTGTC CTCCGATTTCTGCCGGCAACGCGTGCATGCACCTAAGGACAGCATGGCCA TGTCTCCACACGTCTTATCTCCCCTTCCCCAGTCTATTTTTTCAGCTCTC TCTCTCTCTCTCTCTCTCTCTTTCTTTCCCATTTTGTTTTTCGTTGTACC TGCTGAGTGCGATGCTCGCTTCTCTCGGCTTCCACGGCGTGTTTTTCTGC GTAATGTAAATGATGTTTGACAGGCGGTGAAGGCATCGGGGTTGGGGGCT GGAGACAGTGAGAGCGGGGTGGAGGTTGTCGTGGTGAACCATCCGAGCCC CGCTAGCCCCACGGGAGTGAGGTGGGAGAAGGCGGCGTGCCTGGACGAGC TCGTGCTGAAAAGCAGCAAGAGCAAGGAGATCGACCAGTTTCTGCTGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3649366..3652965+

>mRNA_C-linearis_contig11.1416.1 ID=mRNA_C-linearis_contig11.1416.1|Name=mRNA_C-linearis_contig11.1416.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at C-linearis_contig11:3649366..3652965+ (Chordaria linearis ClinC8C monoicous)
ATGCCGTCTACGAAGCGAGGCTCTGCAGCAATGGCGAAGCGTTCGAGCAG
GACGGCCGATCCAGGCAGCAACAAGAGCAGCACGAGCACCAGGACGACCA
AGAAGCAGAGGAAGCCGAAAGCACAAGACTCTACGCTTGTGGCGAGTGGA
GATGAGTTGGTGCGGATATCACGTCGGCTTCATGACAGGCTGAAAGATGC
CGTCTACGAAGCGAGGCTCTGCAGCAATGGCGAAGCGTTCGAGCAGGACG
GCCGATCCAGGCAGCAACAAGAGCAGCACGAGCACCAGGACGACCAAGAA
GCAGAGGAAGCCGAAAGCACAAGACTCTACGCTTGTGGCGAGTGGAGATG
AGTTGGTGCGGATATCACGTCGGCTTCATGACAGGCTGAAAGGCCAGACT
TGGCGGGGCACGAGTAAGCAGCCGGTGACCTGCTCGTACGATGTCCTGGA
GTACGCCTCCGAGACGAACGAGGCCTACACGCGGCGGTACGGGGGGGGTC
GCCCGCTCGGGAGAGCCTTTGTCGTTGGGATGAATCCGGGCCCGTGGGGC
ATGGCCAGACTTGGCGGGGCACGAGTAAGCAGCCGGTGACCTGCTCGTAC
GATGTCCTGGAGTACGCCTCCGAGACGAACGAGGCCTACACGCGGCGGTA
CGGGGGGGGTCGCCCGCTCGGGAGAGCCTTTGTCGTTGGGATGAATCCGG
GCCCGTGGGGCATGGTGCAAACAGGAGTTCCATTCGGCGAGGTAGGCTTC
GTCAGGGACTGGCTGGGGGTACGAGGGGAAGTGGGCCGCCCGCGAAAGGA
GCACGCCAAGCGGCCGGTGGATGGGTTCGACTGTAAGCGCAGCGAGGTGC
AAACAGGAGTTCCATTCGGCGAGGTAGGCTTCGTCAGGGACTGGCTGGGG
GTACGAGGGGAAGTGGGCCGCCCGCGAAAGGAGCACGCCAAGCGGCCGGT
GGATGGGTTCGACTGTAAGCGCAGCGAGGTTAGCGGGACACGCCTGTGGG
GATTTTTCGAGCGCAGGTTCGGAACGGCGGACACCTGGGGAGGTTAGCGG
GACACGCCTGTGGGGATTTTTCGAGCGCAGGTTCGGAACGGCGGACACCT
GGGGAGACAATATGTTCGTCTACAACTACTGCCCGTTGACCTTCATGAGC
TCCTCGGGCAGCAACATCACCCCCGATAAACAATATGTTCGTCTACAACT
ACTGCCCGTTGACCTTCATGAGCTCCTCGGGCAGCAACATCACCCCCGAT
AAGTTGACTCCCGCGGAGCGCGAGGTTATCGACGAGGCCTGCGGCGACGC
CCTCGCGGACATGGTGTCGGCGCTCAAGCCGTCGGTGGTTGTGGGAGTCG
GGAATTTCGCGGGGGCCAAGTGCGTTGAGGTTGACTCCCGCGGAGCGCGA
GGTTATCGACGAGGCCTGCGGCGACGCCCTCGCGGACATGGTGTCGGCGC
TCAAGCCGTCGGTGGTTGTGGGAGTCGGGAATTTCGCGGGGGCCAAGTGC
GTTGAGGCGGTGAAGGCATCGGGGTTGGGGGCTGGAGACAGTGAGAGCGG
GGTGGAGGTTGTCGTGGTGAACCATCCGAGCCCCGCTAGCCCCACGGGAG
TGAGGTGGGAGAAGGCGGCGTGCCTGGACGAGCTCGTGCTGAAAAGCAGC
AAGAGCAAGGAGATCGACCAGTTTCTGCTGTAAGCGGTGAAGGCATCGGG
GTTGGGGGCTGGAGACAGTGAGAGCGGGGTGGAGGTTGTCGTGGTGAACC
ATCCGAGCCCCGCTAGCCCCACGGGAGTGAGGTGGGAGAAGGCGGCGTGC
CTGGACGAGCTCGTGCTGAAAAGCAGCAAGAGCAAGGAGATCGACCAGTT
TCTGCTGTAA
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