mRNA_C-linearis_contig11.1416.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI) HSP 1 Score: 466 bits (1199), Expect = 2.070e-163 Identity = 236/299 (78.93%), Postives = 258/299 (86.29%), Query Frame = 1
Query: 55 ADPGSNKSSTSTRTTKKQRKPKAQD---------STLVASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVRWEKAACLDELVLKSSKSKEIDQFL 924
AD + SS S+R TK+ R+ KA+ STLV+ GDELVRISRRLHD LK + W+GTSKQPV+CSY+VLEYASETNEAYT+RYGGGRP GRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWL V+G VGRP KEH KRPV GFDC+RSEVSGTRLWGFFERRFGTAD WGD MFVYN+CPLTFMSSSG NITPDKLTPAEREVIDEACG+ALA+M+SALKPSVVV VGNFAG+KC EAVKASGL A + VEVVVVNHPSPASPTGV+WEKA CL+ELVL SSKSKEID+FL
Sbjct: 19 ADRKAGDSSCSSRATKQGRRLKAEGGSAGAEAGGSTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHTKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAA-GKGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFL 316
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2D9TGN5_9DELT (Single-stranded DNA-binding protein n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TGN5_9DELT) HSP 1 Score: 218 bits (556), Expect = 5.530e-67 Identity = 113/244 (46.31%), Postives = 154/244 (63.11%), Query Frame = 1
Query: 139 VASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
+A +L I+ RL DRL ++ +PVT YD YA + Y +R+G GR +GMNPGPWGM QTGVPFGEV + RDW+GV+G +G+P EH KRP++GF+C RSEVSG RLWG+ E+RFGTA+ + + +V NYCPL FM S N P+KL AER+ + +AC +AL +++ AL+P +VVGVG +A + A+ + GV + V HPSPASP R W++ A
Sbjct: 1 MAPRSKLSAIADRLSDRLAELSFA----EPVTHVYDPTRYARAAHHDYLKRFGRGRK--EVVFLGMNPGPWGMAQTGVPFGEVSYARDWMGVKGRIGKPEVEHPKRPIEGFECARSEVSGRRLWGWAEQRFGTAEAFFERFYVANYCPLVFMEESARNRVPEKLPVAERQPLLDACDEALVEVIEALQPELVVGVGAWARKRAEAAL---------GDLGVRIGQVLHPSPASPRANRGWQEQA 229
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2A2QJU9_9BACT (Single-stranded DNA-binding protein n=1 Tax=Verrucomicrobiae bacterium Tous-C5FEB TaxID=1982331 RepID=A0A2A2QJU9_9BACT) HSP 1 Score: 218 bits (554), Expect = 1.040e-66 Identity = 118/239 (49.37%), Postives = 152/239 (63.60%), Query Frame = 1
Query: 154 ELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
+L+ +RRL L G + V C Y+ LEYA + +EAY RYG G+ R +GMNPGP+GM QTGVPFGEV VRDWLG+ +V +P KEH KRP++GF CKRSEVSG RLWG F RFG AD++ FV NYCPL +MS++G+N+TPDKL +E + +++AC LA ++ L PS ++GVG FA + + A A G S V V HPSPASP R W +AA
Sbjct: 3 KLIASTRRLVSDLAGLEFGDL----VACVYNPLEYAWQAHEAYLSRYGSGKK--RVLFLGMNPGPFGMAQTGVPFGEVDAVRDWLGICEDVEKPLKEHPKRPIEGFACKRSEVSGRRLWGLFAERFGKADSFFKEHFVMNYCPLVWMSTTGANLTPDKLPASEMQPVEQACLKHLAKVIELLDPSYLIGVGGFAEDRLIRAAAACG-------SKATVGRVLHPSPASPAANRGWAEAA 228
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT) HSP 1 Score: 216 bits (549), Expect = 6.490e-66 Identity = 115/244 (47.13%), Postives = 153/244 (62.70%), Query Frame = 1
Query: 139 VASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
+++ +L+ +RRL D L T+ PV C Y L+YA ++ Y RYG G R +GMNPGP+GM QTGVPFGEV VRDWL + V +P EH KRPV+GF+C RSEVSG RLWG F RFGTAD + + FV NYCPL +MS++G+N+TPDKL AE +++AC LA+++ LKPS ++G+G FA + + A + SG S + + HPSPASP R W +AA
Sbjct: 1 MSAATDLIASTRRLCDALGDLTFAA----PVACVYRPLQYAWRPHQRYLERYGRGPK--RVVFLGMNPGPFGMAQTGVPFGEVAAVRDWLEIHEPVDKPAGEHPKRPVEGFNCTRSEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDKLPAAEMAPVEDACLAHLAEVIGLLKPSFLIGIGGFAEQRLLRAAETSG-------SKAAIGRILHPSPASPAANRGWAEAA 231
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A3N5QI00_9GAMM (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5QI00_9GAMM) HSP 1 Score: 214 bits (545), Expect = 2.220e-65 Identity = 113/237 (47.68%), Postives = 145/237 (61.18%), Query Frame = 1
Query: 157 LVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKA 864
LV +SR L +R+ + PV C Y+ LEYA +E Y RYGGG ++GMNPGP+GM QTGVPFG+V VRDWLG+ V RPR EH KRPV GFDC R+E+SGTRLWG+ RFGT + + FV NYCPL F+++SG+N+TPDKL AE+ + AC +AL +V L+P +V+GVG FA + A+ + G + HPSPASP R W A
Sbjct: 3 LVDVSRALSERVASLRFA----DPVCCVYNPLEYARAPHELYLSRYGGGPK--EVLLLGMNPGPFGMAQTGVPFGDVTMVRDWLGIVAPVARPRDEHPKRPVLGFDCHRTEISGTRLWGWARDRFGTPQRFFERFFVANYCPLAFVAASGANLTPDKLPAAEQRAVSSACDEALRAVVRLLRPQIVIGVGGFAERRARAALGGENIAIG---------TILHPSPASPLANRGWAGA 224
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2W4L8P9_9PROT (Single-stranded DNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L8P9_9PROT) HSP 1 Score: 213 bits (543), Expect = 4.450e-65 Identity = 110/205 (53.66%), Postives = 136/205 (66.34%), Query Frame = 1
Query: 226 PVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASP 840
PVT Y+ L+YA E +E Y RYG GR A +GMNPGP+GM QTGVPFGEV VRDWL + G+VG+P EH KRPV GFDC RSEVSG+R+WG+ FGT + + + FV NYCPL FM +SG N+TPDKL AERE + AC AL M+ +P V+GVGNFA A+ EA++ +G+ G + HPSPASP
Sbjct: 21 PVTHVYNPLQYAREPHERYLERYGQGRK--EAVFLGMNPGPFGMAQTGVPFGEVRIVRDWLKIEGKVGKPPVEHPKRPVQGFDCPRSEVSGSRIWGWVRDTFGTPERFFERFFVANYCPLVFMEASGRNLTPDKLPRAEREPLFAACDRALRRMMEIWQPRWVIGVGNFAEARAREALEGTGISVGR---------ILHPSPASP 214
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A831XLZ5_GEOME (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Geobacter TaxID=28231 RepID=A0A831XLZ5_GEOME) HSP 1 Score: 213 bits (541), Expect = 9.190e-65 Identity = 121/238 (50.84%), Postives = 143/238 (60.08%), Query Frame = 1
Query: 157 LVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
LV I+ L L G ++ PV C Y+ L YA E + AY R+G P +VGMNPGPWGM QTGVPFGE+G V +WLGV G V RP EH K+ VDGF C+RSEVSG RLWG RFGT + + FV NYCPL F++ G NITPDKL E+E + AC AL V L+P VVVGVG FA +C EA+ +GL VEV + HPSPASP R W AA
Sbjct: 4 LVNIADTLAADLAGLSF----STPVACVYNPLVYAREPHAAYLSRFGS--PPKEVLIVGMNPGPWGMAQTGVPFGEIGVVAEWLGVTGTVTRPADEHPKKRVDGFACRRSEVSGRRLWGLVRERFGTPERFFARFFVANYCPLLFLTVDGGNITPDKLRRGEQEPLFAACDRALRRTVDLLRPRVVVGVGGFAEGRCREAL--AGLN-------VEVGRIIHPSPASPAANRDWAGAA 226
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4) HSP 1 Score: 213 bits (541), Expect = 1.080e-64 Identity = 116/242 (47.93%), Postives = 154/242 (63.64%), Query Frame = 1
Query: 145 SGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
S L+ SRRL L G + PV+ +Y+ LEYA +E Y +YG G+ R +GMNPGP+GM QTGVPFGE+ VRDW+G+ VG+P EH KRP++GF C +SEVSG RLWG F RFGTA+ + + FV NYCPL +MSS+G+N+TPDKL+ AE E +++AC LA+++ L+P +VGVG FA + A +G G+ + G V HPSPASP R W +AA
Sbjct: 2 SAAALIDSSRRLESALHGARF----SPPVSHAYNPLEYARVPHELYLSKYGKGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVRDWMGIEAPVGKPVPEHLKRPIEGFACPKSEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDKLSSAEMEPVEQACLAHLAEVIGILQPEWLVGVGAFAEERLRRAAAKAG---GEFKIGR----VLHPSPASPAANRGWSEAA 230
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A399HZ39_9DELT (Single-stranded DNA-binding protein n=1 Tax=Geobacter sp. TaxID=46610 RepID=A0A399HZ39_9DELT) HSP 1 Score: 212 bits (539), Expect = 1.780e-64 Identity = 118/242 (48.76%), Postives = 144/242 (59.50%), Query Frame = 1
Query: 136 LVASGDELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WE 858
L+ DELV RLH PV Y+ L YA + +E Y RRYG P FV GMNPGPWGM QTGVPFGE+ VRDWLG+ G VGRP +E+ K+ V GF C+RSEVSG RLWG R+GT + + D FV NYCPL F+ + G N+TPDKL AER+ ++ AC AL V L+PS V+GVGNFA + V A+ SG+ G + HPSPA+P R WE
Sbjct: 3 LLKVTDELVAELGRLH-----------FAPPVAHVYNPLVYARQPHEEYLRRYGN-VPKETVFV-GMNPGPWGMAQTGVPFGEISAVRDWLGIDGTVGRPAEEYPKKLVTGFACRRSEVSGRRLWGLIRSRYGTPERFFDRFFVLNYCPLLFLDTDGRNLTPDKLRSAERDTLNAACDRALRRQVELLRPSCVIGVGNFAADQVVRALAGSGIRVGR---------ILHPSPANPAANRGWE 222
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Match: A0A2A4P0Q3_9BACT (Single-stranded DNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A4P0Q3_9BACT) HSP 1 Score: 212 bits (539), Expect = 1.780e-64 Identity = 115/239 (48.12%), Postives = 147/239 (61.51%), Query Frame = 1
Query: 154 ELVRISRRLHDRLKGQTWRGTSKQPVTCSYDVLEYASETNEAYTRRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVRGEVGRPRKEHAKRPVDGFDCKRSEVSGTRLWGFFERRFGTADTWGDNMFVYNYCPLTFMSSSGSNITPDKLTPAEREVIDEACGDALADMVSALKPSVVVGVGNFAGAKCVEAVKASGLGAGDSESGVEVVVVNHPSPASPTGVR-WEKAA 867
E++ I+RRL + + +P+T Y+ L+YA + +E Y RRY RP +A ++GMNPGPWGM QTGVPFGEV VR+WL + GEV +P K H KRP+ G +C RSEVSG RLW + RF +AD + DN FV+N+CPL FM SG N TPDKL AERE + +AC AL V ALKP +VVGVG FA + + A + E+ + HPSPASP R W A
Sbjct: 2 EVIDIARRLSREVSNLKF----SEPITHVYNPLDYAWDLHEQYLRRYS--RPGVKAILLGMNPGPWGMAQTGVPFGEVTHVREWLKLDGEVKQPAKIHPKRPIQGLNCHRSEVSGRRLWSWARERFSSADHFFDNFFVFNWCPLCFMEESGRNRTPDKLPAAEREPLQQACDRALVASVRALKPGMVVGVGKFARDQAARILAAEDI---------EIGQILHPSPASPIANRGWAPQA 225 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1416.1 >prot_C-linearis_contig11.1416.1 ID=prot_C-linearis_contig11.1416.1|Name=mRNA_C-linearis_contig11.1416.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=310bp MPSTKRGSAAMAKRSSRTADPGSNKSSTSTRTTKKQRKPKAQDSTLVASGback to top mRNA from alignment at C-linearis_contig11:3649366..3652965+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1416.1 ID=mRNA_C-linearis_contig11.1416.1|Name=mRNA_C-linearis_contig11.1416.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3600bp|location=Sequence derived from alignment at C-linearis_contig11:3649366..3652965+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3649366..3652965+ >mRNA_C-linearis_contig11.1416.1 ID=mRNA_C-linearis_contig11.1416.1|Name=mRNA_C-linearis_contig11.1416.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at C-linearis_contig11:3649366..3652965+ (Chordaria linearis ClinC8C monoicous)back to top |