mRNA_C-linearis_contig11.1410.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1410.1
Unique NamemRNA_C-linearis_contig11.1410.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3627904..3630141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size292
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1410.1prot_C-linearis_contig11.1410.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3627904..3630023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.6067097-CDS-C-linearis_contig11:3627903..36279331622927427.6067097-CDS-C-linearis_contig11:3627903..3627933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3627904..3627933 -
1690879694.2696772-CDS-C-linearis_contig11:3627903..36279331690879694.2696772-CDS-C-linearis_contig11:3627903..3627933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3627904..3627933 -
1622927427.6295888-CDS-C-linearis_contig11:3629879..36300231622927427.6295888-CDS-C-linearis_contig11:3629879..3630023Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3629880..3630023 -
1690879694.2805312-CDS-C-linearis_contig11:3629879..36300231690879694.2805312-CDS-C-linearis_contig11:3629879..3630023Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3629880..3630023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.6478553-UTR-C-linearis_contig11:3630023..36301411622927427.6478553-UTR-C-linearis_contig11:3630023..3630141Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3630024..3630141 -
1690879694.2881067-UTR-C-linearis_contig11:3630023..36301411690879694.2881067-UTR-C-linearis_contig11:3630023..3630141Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3630024..3630141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1410.1

>prot_C-linearis_contig11.1410.1 ID=prot_C-linearis_contig11.1410.1|Name=mRNA_C-linearis_contig11.1410.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=58bp
MPPRTEEQRDRFSPFLMRKQQTPQVPPAADADASADPSPPSSGQTQCLIN
HRVLLLAG
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mRNA from alignment at C-linearis_contig11:3627904..3630141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1410.1 ID=mRNA_C-linearis_contig11.1410.1|Name=mRNA_C-linearis_contig11.1410.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2238bp|location=Sequence derived from alignment at C-linearis_contig11:3627904..3630141- (Chordaria linearis ClinC8C monoicous)
CACTATCTCCCGGTCCAACACACACCCCTTCCCCAGCGAACAACGGTAGA
CTGACACGTTGGGAGTAGAAGGAAGTTGGGAAGGTCCAATATCCCCGCGA
AGCTCTGGTGTGCGCATTATGCCCCCGCGCACGGAGGAGCAGCGTGACCG
ATTCTCCCCGTTCCTCATGAGGAAGCAGCAGACCCCACAAGTCCCTCCTG
CAGCTGATGCTGATGCTTCAGCAGACCCATCGCCGCCGAGCAGCGGCCAA
ACCCAGTGCCTGGTGAGACACACAAAAGAGATCTGCACACGCCTGCTGTG
TGTGCGGGAAGTCAGGTATCTTGCTGAGAGAAACTCACAATGTTGGGACG
GGGTGGGACGCTCTTGATTCAGACCTGCTGTGCTGCATGTGCAAAGTTGC
CGTAGTTGCACGTACACTTAGTCTACCCTCGGATGATACAGGTGGGCCGA
AATCACATGGGGGTGAGGGTGTGGGAAGCTGGTAGGGGGGGAAACCCCCT
GCGACTCTCGTTTTCTCTTGCTACTTCTGCTGTTTCACCTTCTCTCTCGT
GTGTAGGTATGCGTGAACAATCTCGTCGAAAAGAAAGGAAGAAATAGGCT
AACCGCCACCAAATGGCCAAACGGAAACGACCACTTTCGCAGCTGCAGGC
TTGTCTATGTCATCGTTTTGGTACCGGTAGACACAGCTTGCATTGTGTTG
TGAGTTGCCCAGTTGCCAGCCTCAGGCGCAGGCTTAGGCAGCTGGGGTCC
CTTTCTGGCTTTCTATCGCCCGTGTACGCAGATGCGGAGAAATTGTTGCC
GCTGCTGCTCCTTTGTTCCGCGCAAGTGCGAGCCTGGAGGCCGAAGCTAC
ACGGACCATCTCACCAACCTATGATAGCGCGCTTCGCAGTGTGAAAGTCG
ATTTCCCCGGGGCATGGGCTGGGCAAACTCAAAACTGTACAGAGTGTGCA
CAGCAGACAAACTGTTGGAGGTTTGGAGCATGTGCAGACTACGGGGGCAA
AACACACGTCTCACTTCAACCTGTTTCAGACAGCTTGTAAGAGCTCATCA
TGAAGCAGCCTTCCGTCCACAGATAATCGATACAGCAGTGTGGTGTGTGC
ACTCAGGCAATTGCGCGTTCCGCAGGAAAACGCCACGGGGAACACTGCTG
CTGTACAGCAGTATTTTTGTGCCATTTAGCAATTGCATCTCTCCTGGGTC
ACAAATCTCAAATCTCGCCCTGTTTGGGTGCCCCCCCTGTTTTTTTTTGT
TTTTTTTTCTCCCGTCGATGTTTTTTCGTACCCTGCCTCCTTTCACTGAA
ACTATAAAGCTAGGCTACCATCCACACACACATGCCGGTCGCCCCGGTGG
ACTATTGGTTTAACCTTGAACCCACTAGCAGCAAAGTCTGGAGTTCAAAT
CCAAGCAAAGGTGTTTCTTTTGCGTCTTTGCAGGTGAAGCGATAACAGTG
AGTACCAAACTTCGACTTAGCACGTTGACGAGGGAAAGGGATGGCTGCAC
CCTTCTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCA
AAAAAGAAACAGAAAAAAAAGAAAAAAAGCCCCAGTGTTTACCCCCTCCT
GTGTGACCCCGGTACGCACCGCAGGAGGAAGGTGGGGCAAAAAAGAAACA
GAAAAAGAAGAAAAAAAGCCCCAGTGTTAACCCCCTCCTGTGTGACCCCG
GTTGGTTCTACAGTAGTTGTACAGAAAAATACACTGAACAAGTGTAGTAC
TCTAAATACATCGCAACGTGTAGTACACGTCTCGCGTTGATCGGAAAGGG
ACTGTCGCCATATAAATGGGACGTAAACAAACACACACACACACCATCCG
GGCTCACACAGGAGGGGATGTCTCCACCTACTACCTCGTGCGGTGCATGC
TTTTGATTTTTTTTGTCGCGAGCAGGGTTAAGCACTCCTCACCCTCGTCA
ACAATGAAGTCGAAAGTAGAATTTACTCACAAGCTATGCAGCAAGTTTTC
AATGTACCAGGAACGAAAGTGAGAAAAAAACTCGACGGGGCTCGAACCCA
TGACCTAGTGCTTAGCAGACTGCGTGGGTACCTACTAGACCACCAGGGCG
ACCGGCTGTAAATGTACACAGTGAAGCGATCTTGGTGAAAGTACACACCC
CGCCCACCCGTAGCCTAACCCGGACACCATGTCGTACGACCCAACTTGTG
CCTCTCAGATCAACCACCGCGTGCTGCTCCTGGCGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig11:3627904..3630141-

>mRNA_C-linearis_contig11.1410.1 ID=mRNA_C-linearis_contig11.1410.1|Name=mRNA_C-linearis_contig11.1410.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at C-linearis_contig11:3627904..3630141- (Chordaria linearis ClinC8C monoicous)
ATGCCCCCGCGCACGGAGGAGCAGCGTGACCGATTCTCCCCGTTCCTCAT
GAGGAAGCAGCAGACCCCACAAGTCCCTCCTGCAGCTGATGCTGATGCTT
CAGCAGACCCATCGCCGCCGAGCAGCGGCCAAACCCAGTGCCTGATGCCC
CCGCGCACGGAGGAGCAGCGTGACCGATTCTCCCCGTTCCTCATGAGGAA
GCAGCAGACCCCACAAGTCCCTCCTGCAGCTGATGCTGATGCTTCAGCAG
ACCCATCGCCGCCGAGCAGCGGCCAAACCCAGTGCCTGATCAACCACCGC
GTGCTGCTCCTGGCGGGGATCAACCACCGCGTGCTGCTCCTGGCGGGG
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