mRNA_C-linearis_contig11.1383.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1383.1
Unique NamemRNA_C-linearis_contig11.1383.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3356882..3357869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size988
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1383.1prot_C-linearis_contig11.1383.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3357130..3357702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.1322656-UTR-C-linearis_contig11:3356881..33571291622927429.1322656-UTR-C-linearis_contig11:3356881..3357129Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3356882..3357129 +
1690879694.8074164-UTR-C-linearis_contig11:3356881..33571291690879694.8074164-UTR-C-linearis_contig11:3356881..3357129Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3356882..3357129 +
1622927429.155216-UTR-C-linearis_contig11:3357702..33578691622927429.155216-UTR-C-linearis_contig11:3357702..3357869Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3357703..3357869 +
1690879694.8266366-UTR-C-linearis_contig11:3357702..33578691690879694.8266366-UTR-C-linearis_contig11:3357702..3357869Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3357703..3357869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.1448998-CDS-C-linearis_contig11:3357129..33577021622927429.1448998-CDS-C-linearis_contig11:3357129..3357702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3357130..3357702 +
1690879694.8181198-CDS-C-linearis_contig11:3357129..33577021690879694.8181198-CDS-C-linearis_contig11:3357129..3357702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3357130..3357702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1383.1

>prot_C-linearis_contig11.1383.1 ID=prot_C-linearis_contig11.1383.1|Name=mRNA_C-linearis_contig11.1383.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=191bp
MRLDLESRRTESTCSFTRVFHNPFDQPRSISKAARRHTQQCRHKYKSKTT
SSLHVKCTALVCARAIDTFIFAQTTKSDFTAARPRLAPQRTTHGTNLLYR
CCLRPPTPPVTAVVSPMPRCKKTIHTQAGTQTFTSRTLSKHAATTNDPYM
PAKQIHGCGNGKQHVEPTPDSPLSALPFLFASKHTSTPST*
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mRNA from alignment at C-linearis_contig11:3356882..3357869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1383.1 ID=mRNA_C-linearis_contig11.1383.1|Name=mRNA_C-linearis_contig11.1383.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=988bp|location=Sequence derived from alignment at C-linearis_contig11:3356882..3357869+ (Chordaria linearis ClinC8C monoicous)
GCGGACGGAGTGCCTCCGATACTGATAAAATCCGCACTAAACAACGTCGG
TGAGGACTCCTTGATCTCAGAAAACCCAATCTGTCTGTGCATAGTTCTTG
CTCAGTGGCCACACAGTGTGTTGGTTTGAGCTTTTCGAAACACGGATCAT
ATCATAGGTGATATATAAATAGCGGTTATATCACGGGCCTCTTACACCCT
ACGCCAGTCGACCTACGCAAAAAAGACTTCTACAGTTACATACAAATAAT
GCGGCTTGACCTGGAAAGTCGCCGAACCGAATCGACTTGTTCATTCACAC
GGGTTTTCCACAACCCCTTCGACCAACCCCGCTCAATCTCAAAAGCCGCA
CGACGTCACACTCAACAATGTCGGCATAAATACAAGAGCAAAACCACGAG
CTCCCTTCACGTTAAATGCACTGCCCTGGTATGCGCTCGTGCGATAGATA
CCTTCATTTTCGCACAGACTACTAAGTCTGATTTCACTGCCGCCCGCCCT
CGCCTCGCCCCTCAAAGGACAACGCACGGTACCAACCTACTTTATAGATG
CTGTTTACGACCGCCTACTCCTCCTGTGACAGCAGTAGTCTCGCCAATGC
CTCGCTGCAAAAAAACCATACACACGCAGGCGGGGACACAAACTTTCACA
TCGAGAACACTTTCGAAACATGCCGCCACCACGAACGACCCATACATGCC
TGCCAAACAAATCCATGGCTGCGGCAACGGGAAGCAACACGTCGAGCCCA
CGCCCGACTCTCCCCTCTCTGCCCTTCCCTTTCTCTTCGCATCCAAGCAC
ACATCAACCCCCTCCACGTGAAGCACTGACCCATCACGCACGACAGGGTC
CGTATTCACGCCACCACCAAACCACGAATACCTCAGCCCACCACCCTCCC
TACTCCTGTGACCTTTACCTCTATAATGTGTTTGCGAAGATCACACGCCC
TCGACCCCGGTTCTCTATCCGGGTGTGGTCGCTTTTTG
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Coding sequence (CDS) from alignment at C-linearis_contig11:3356882..3357869+

>mRNA_C-linearis_contig11.1383.1 ID=mRNA_C-linearis_contig11.1383.1|Name=mRNA_C-linearis_contig11.1383.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at C-linearis_contig11:3356882..3357869+ (Chordaria linearis ClinC8C monoicous)
ATGCGGCTTGACCTGGAAAGTCGCCGAACCGAATCGACTTGTTCATTCAC
ACGGGTTTTCCACAACCCCTTCGACCAACCCCGCTCAATCTCAAAAGCCG
CACGACGTCACACTCAACAATGTCGGCATAAATACAAGAGCAAAACCACG
AGCTCCCTTCACGTTAAATGCACTGCCCTGGTATGCGCTCGTGCGATAGA
TACCTTCATTTTCGCACAGACTACTAAGTCTGATTTCACTGCCGCCCGCC
CTCGCCTCGCCCCTCAAAGGACAACGCACGGTACCAACCTACTTTATAGA
TGCTGTTTACGACCGCCTACTCCTCCTGTGACAGCAGTAGTCTCGCCAAT
GCCTCGCTGCAAAAAAACCATACACACGCAGGCGGGGACACAAACTTTCA
CATCGAGAACACTTTCGAAACATGCCGCCACCACGAACGACCCATACATG
CCTGCCAAACAAATCCATGGCTGCGGCAACGGGAAGCAACACGTCGAGCC
CACGCCCGACTCTCCCCTCTCTGCCCTTCCCTTTCTCTTCGCATCCAAGC
ACACATCAACCCCCTCCACGTGAATGCGGCTTGACCTGGAAAGTCGCCGA
ACCGAATCGACTTGTTCATTCACACGGGTTTTCCACAACCCCTTCGACCA
ACCCCGCTCAATCTCAAAAGCCGCACGACGTCACACTCAACAATGTCGGC
ATAAATACAAGAGCAAAACCACGAGCTCCCTTCACGTTAAATGCACTGCC
CTGGTATGCGCTCGTGCGATAGATACCTTCATTTTCGCACAGACTACTAA
GTCTGATTTCACTGCCGCCCGCCCTCGCCTCGCCCCTCAAAGGACAACGC
ACGGTACCAACCTACTTTATAGATGCTGTTTACGACCGCCTACTCCTCCT
GTGACAGCAGTAGTCTCGCCAATGCCTCGCTGCAAAAAAACCATACACAC
GCAGGCGGGGACACAAACTTTCACATCGAGAACACTTTCGAAACATGCCG
CCACCACGAACGACCCATACATGCCTGCCAAACAAATCCATGGCTGCGGC
AACGGGAAGCAACACGTCGAGCCCACGCCCGACTCTCCCCTCTCTGCCCT
TCCCTTTCTCTTCGCATCCAAGCACACATCAACCCCCTCCACGTGA
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