mRNA_C-linearis_contig11.1377.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1377.1
Unique NamemRNA_C-linearis_contig11.1377.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3271940..3275101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2001
Cds size1203
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1377.1prot_C-linearis_contig11.1377.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3273362..3274634 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.0378668-UTR-C-linearis_contig11:3271939..32721921622927427.0378668-UTR-C-linearis_contig11:3271939..3272192Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3271940..3272192 +
1690879693.9787278-UTR-C-linearis_contig11:3271939..32721921690879693.9787278-UTR-C-linearis_contig11:3271939..3272192Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3271940..3272192 +
1622927427.0526853-UTR-C-linearis_contig11:3273283..32733611622927427.0526853-UTR-C-linearis_contig11:3273283..3273361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3273284..3273361 +
1690879693.9875512-UTR-C-linearis_contig11:3273283..32733611690879693.9875512-UTR-C-linearis_contig11:3273283..3273361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3273284..3273361 +
1622927427.1000082-UTR-C-linearis_contig11:3274634..32751011622927427.1000082-UTR-C-linearis_contig11:3274634..3275101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3274635..3275101 +
1690879694.0142713-UTR-C-linearis_contig11:3274634..32751011690879694.0142713-UTR-C-linearis_contig11:3274634..3275101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3274635..3275101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927427.0689843-CDS-C-linearis_contig11:3273361..32745181622927427.0689843-CDS-C-linearis_contig11:3273361..3274518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3273362..3274518 +
1690879693.9974859-CDS-C-linearis_contig11:3273361..32745181690879693.9974859-CDS-C-linearis_contig11:3273361..3274518Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3273362..3274518 +
1622927427.0860949-CDS-C-linearis_contig11:3274588..32746341622927427.0860949-CDS-C-linearis_contig11:3274588..3274634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3274589..3274634 +
1690879694.0054715-CDS-C-linearis_contig11:3274588..32746341690879694.0054715-CDS-C-linearis_contig11:3274588..3274634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3274589..3274634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1377.1

>prot_C-linearis_contig11.1377.1 ID=prot_C-linearis_contig11.1377.1|Name=mRNA_C-linearis_contig11.1377.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=401bp
METLPLQAGQDSRERPPAHNAGHAKAKSKGSYAGSLDPAIQPVRVGRSIN
PAAMKKPFPDFDGETSLQDAIRLHQRAEGPPPPLARQRSRVLSGSRAWER
TASGRTTAATDGDDDDSARIYASPRIAVRGPKRTRREGAGDNGGSGGGSG
RPGSCKREIPRMPSFGGSAARRGRVRGGVAGAAGRRTGSKLSNAVGVGSL
ITAEEGKESPSAPLEVSHHATTWQGFVQMASVNPLFSQYGKHAPSSFGGA
DTPSAVDLPVTASAGAAASGVDKLERPTSKKPTLGASEMIAASVRNFITA
PPDTTTTTTDPPARLGSTATGQSSSDMDVLFGRRQEADRGDCMLAESEAE
SEAEGAKIAARKDIEARAVPAHLSAAAALVVAERNRRCELYPETGGVMHR
*
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mRNA from alignment at C-linearis_contig11:3271940..3275101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1377.1 ID=mRNA_C-linearis_contig11.1377.1|Name=mRNA_C-linearis_contig11.1377.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3162bp|location=Sequence derived from alignment at C-linearis_contig11:3271940..3275101+ (Chordaria linearis ClinC8C monoicous)
CGCGGGCCGTGAGTTCCGCGCGCGCGTTCAAGAGCCGAGAGCGAGGGTAT
TGTTGCGAGAACGTGATTCACTCACGCGAGGGCCGGGGAGGAGAGAGAGC
GAGCGAGCGAGAGAGGCTCGGCAGGCACCCAGACAGGGAGCGGGTCGAGT
CTGTGGTGGCCGTCGGATGCTTACAGCAGTGCGGTGTGTGGGTGCTCAAA
AAGGACAACAACGGCATCCTCCTTTCTTTGTGACTGACGAACACAGGAGG
GAGGTGGGTGAGGAGTGTTGTGTGCGTGTTTCCCTGCTGATTTCTGGTTC
GGTTGATTACCTCGCTCTATCGGTCCTTGGCCTGCTTCCGTATACAAGAC
TCGTCAGCACAGCTGCTCGCGTGTGTCTGTCGAGCTTTTTGTGTGTTACC
AGATGGATGGATTATCCGGCTGTTTTGGGGTGTGATACATAGTAAGTGGC
GTCCGGTAGAAGTTTTTTAGCTGCGTTTATAATTTTATAAGTCACTCGTG
CCGTAGGACTCATCCGGTAGCTGTTGGATACATCCCACACAATGATCTAT
GGTCGCATCCCTTCATTCAATGATCGCGATACATGCCTCAACGCCCCACC
CGTACTACTGCTGTCCAGTGCACCGGTTCTATTGGGGTGGTCTGCAGTAC
GGAGATCAAGCATTTTTTTTTTGTTCATCGTCACATATAATAATAACCAG
AGCTCACAGCATTTCGGCCGGATAGGAGCTCTAGCCCGTGGTCACACAGA
AGGGTTCCTCTCCCTGAAGCCCCTCACCCTCCCCTCCTGCGGTGCTTCGC
CTTCGATTTTTAATGCGAGAAGAGCGCGGCAATCTCTTCCCTATGTGTAC
ACACGACAACTGTTGTAGCGGTTTCCACAACCAGGCACGTATTTGAGAGG
AAAACTAACGTTTTTTTATGGTGAGAAAATATCGCATACGCCGGGATTTG
AACCCGTGACCTGGGCGCTAGAAGGTGTGCGGTGTACCAACTAGACCACC
GAGTATAGCCCTTTTTTTGTTATGGCCGTAACGCAGTCTAGGCTAACAGT
TTGCGTGCAGCACACGGCACCTTCAGTGTCGGTGTCTTGACTGAATGAAG
GCATGGCTGGCCAATATATCACACGGCACCCTGTGCATTTTTTTTTTTCG
TCCCGTCAATGGCCTAGCCTGCCTTCTCCTCTTCGGTGCACTACACGTTG
CGGTGTAGGTGCACATAAACGTTTCGGTGCAGCCAATACAACTAGCTAGA
CGTACCATCCGGGGCCACACAGGAGGAGGTACCCACGCCGGGGAGGTTTC
TTCTTTTTTGTACACCACCCTCGACAATGTTGTCTTTTGTGCAGGTCACT
CACCCGCGGTGTATTCCAGGGAGCTGATTTGCGTTCTGTCTGCTGTCAGA
CGGCGGGCAGTCCCGTTCCGCGATGGAGACGCTGCCCCTTCAAGCGGGGC
AGGACAGCAGGGAAAGGCCACCAGCACACAACGCCGGCCATGCCAAAGCA
AAATCAAAGGGCAGCTATGCCGGGTCTCTAGACCCGGCGATCCAGCCCGT
CCGCGTGGGGCGTTCCATCAATCCCGCTGCGATGAAGAAGCCCTTTCCGG
ACTTCGACGGCGAGACGTCGCTGCAGGACGCGATACGCCTGCACCAGCGG
GCTGAAGGTCCACCCCCGCCACTGGCGCGGCAGCGCTCCCGCGTGTTGTC
AGGCAGCCGGGCCTGGGAGAGGACCGCCTCGGGCAGGACGACCGCGGCCA
CCGATGGCGATGACGACGACTCGGCGAGGATATACGCCTCGCCGCGAATC
GCGGTACGCGGGCCGAAGAGGACGAGGAGGGAAGGCGCCGGCGATAACGG
CGGCAGCGGCGGCGGAAGTGGCCGCCCTGGCTCCTGCAAGCGGGAAATTC
CTCGGATGCCGAGTTTTGGAGGCTCAGCAGCACGCCGTGGTCGAGTTCGC
GGCGGCGTCGCCGGGGCGGCGGGACGCCGGACAGGCTCCAAGTTGTCGAA
CGCGGTGGGCGTGGGGTCTTTGATCACGGCGGAGGAGGGTAAGGAGTCGC
CATCGGCGCCGCTAGAAGTATCCCATCACGCCACGACCTGGCAGGGCTTC
GTGCAGATGGCCAGCGTAAATCCGTTGTTTTCGCAGTACGGCAAGCATGC
GCCTTCTTCTTTTGGAGGAGCGGACACGCCGAGCGCGGTCGATCTACCGG
TCACGGCTTCAGCCGGTGCCGCAGCAAGCGGAGTGGATAAGCTCGAAAGG
CCCACCAGCAAGAAGCCCACACTAGGTGCTAGCGAAATGATCGCCGCTTC
TGTCCGGAACTTCATTACCGCCCCGCCCGACACCACCACCACCACCACAG
ATCCTCCGGCGAGGCTAGGGTCGACAGCGACAGGCCAATCGTCGTCGGAC
ATGGACGTCTTGTTCGGCCGCCGACAGGAAGCCGACCGAGGGGACTGCAT
GCTGGCGGAGTCGGAGGCAGAGTCGGAGGCGGAGGGGGCAAAGATCGCCG
CCAGAAAGGACATCGAAGCCAGGGCGGTTCCGGCTCACCTGAGCGCGGCC
GCGGCGCTCGTTGTCGCGGAACGCAACCGGCGGAGCAAGGATCGGGAAGC
AGAACGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
CGCTGCGAGCTGTACCCGGAGACGGGGGGGGTGATGCACCGGTAAAGGCC
GCCGAACTAGAAGCGGTGAAAATAGTCACCGCGGACGACAAGCCCCTGCT
GGCGCCGCTCGGCGGGAACGGCGAGTGGCCAGGGGTCTCAGTGAAGTCGA
TGGCAAAGCGCTTTGAACCACAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAGCAACGTGTTGCCGATGGCAGCGCTGAACCCGGCCCCACCTCCTCTCT
TCCGAAGCCGTCCGACACGGCTGGTCGTGGGCGCGAATACAATGAGGGCG
GTGACGGCGCCGGGCAATCCCTGCCCGAGTCCACCGAAACCGCTTCCTCC
GCGCGGAGACCGCTCGACACCGCCGCCGGCCGTGAGGGCGTGCACGGCAG
CCCCGGGAACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCAACAACG
ACGGGCGCGTGCGGAGCATTCGACGCAGGGGTAACCTCGTCTCGCAGACC
TCGATCAACTCC
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Coding sequence (CDS) from alignment at C-linearis_contig11:3271940..3275101+

>mRNA_C-linearis_contig11.1377.1 ID=mRNA_C-linearis_contig11.1377.1|Name=mRNA_C-linearis_contig11.1377.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2406bp|location=Sequence derived from alignment at C-linearis_contig11:3271940..3275101+ (Chordaria linearis ClinC8C monoicous)
ATGGAGACGCTGCCCCTTCAAGCGGGGCAGGACAGCAGGGAAAGGCCACC
AGCACACAACGCCGGCCATGCCAAAGCAAAATCAAAGGGCAGCTATGCCG
GGTCTCTAGACCCGGCGATCCAGCCCGTCCGCGTGGGGCGTTCCATCAAT
CCCGCTGCGATGAAGAAGCCCTTTCCGGACTTCGACGGCGAGACGTCGCT
GCAGGACGCGATACGCCTGCACCAGCGGGCTGAAGGTCCACCCCCGCCAC
TGGCGCGGCAGCGCTCCCGCGTGTTGTCAGGCAGCCGGGCCTGGGAGAGG
ACCGCCTCGGGCAGGACGACCGCGGCCACCGATGGCGATGACGACGACTC
GGCGAGGATATACGCCTCGCCGCGAATCGCGGTACGCGGGCCGAAGAGGA
CGAGGAGGGAAGGCGCCGGCGATAACGGCGGCAGCGGCGGCGGAAGTGGC
CGCCCTGGCTCCTGCAAGCGGGAAATTCCTCGGATGCCGAGTTTTGGAGG
CTCAGCAGCACGCCGTGGTCGAGTTCGCGGCGGCGTCGCCGGGGCGGCGG
GACGCCGGACAGGCTCCAAGTTGTCGAACGCGGTGGGCGTGGGGTCTTTG
ATCACGGCGGAGGAGGGTAAGGAGTCGCCATCGGCGCCGCTAGAAGTATC
CCATCACGCCACGACCTGGCAGGGCTTCGTGCAGATGGCCAGCGTAAATC
CGTTGTTTTCGCAGTACGGCAAGCATGCGCCTTCTTCTTTTGGAGGAGCG
GACACGCCGAGCGCGGTCGATCTACCGGTCACGGCTTCAGCCGGTGCCGC
AGCAAGCGGAGTGGATAAGCTCGAAAGGCCCACCAGCAAGAAGCCCACAC
TAGGTGCTAGCGAAATGATCGCCGCTTCTGTCCGGAACTTCATTACCGCC
CCGCCCGACACCACCACCACCACCACAGATCCTCCGGCGAGGCTAGGGTC
GACAGCGACAGGCCAATCGTCGTCGGACATGGACGTCTTGTTCGGCCGCC
GACAGGAAGCCGACCGAGGGGACTGCATGCTGGCGGAGTCGGAGGCAGAG
TCGGAGGCGGAGGGGGCAAAGATCGCCGCCAGAAAGGACATCGAAGCCAG
GGCGGTTCCGGCTCACCTGAGCGCGGCCGCGGCGCTCGTTGTCGCGGAAC
GCAACCGATGGAGACGCTGCCCCTTCAAGCGGGGCAGGACAGCAGGGAAA
GGCCACCAGCACACAACGCCGGCCATGCCAAAGCAAAATCAAAGGGCAGC
TATGCCGGGTCTCTAGACCCGGCGATCCAGCCCGTCCGCGTGGGGCGTTC
CATCAATCCCGCTGCGATGAAGAAGCCCTTTCCGGACTTCGACGGCGAGA
CGTCGCTGCAGGACGCGATACGCCTGCACCAGCGGGCTGAAGGTCCACCC
CCGCCACTGGCGCGGCAGCGCTCCCGCGTGTTGTCAGGCAGCCGGGCCTG
GGAGAGGACCGCCTCGGGCAGGACGACCGCGGCCACCGATGGCGATGACG
ACGACTCGGCGAGGATATACGCCTCGCCGCGAATCGCGGTACGCGGGCCG
AAGAGGACGAGGAGGGAAGGCGCCGGCGATAACGGCGGCAGCGGCGGCGG
AAGTGGCCGCCCTGGCTCCTGCAAGCGGGAAATTCCTCGGATGCCGAGTT
TTGGAGGCTCAGCAGCACGCCGTGGTCGAGTTCGCGGCGGCGTCGCCGGG
GCGGCGGGACGCCGGACAGGCTCCAAGTTGTCGAACGCGGTGGGCGTGGG
GTCTTTGATCACGGCGGAGGAGGGTAAGGAGTCGCCATCGGCGCCGCTAG
AAGTATCCCATCACGCCACGACCTGGCAGGGCTTCGTGCAGATGGCCAGC
GTAAATCCGTTGTTTTCGCAGTACGGCAAGCATGCGCCTTCTTCTTTTGG
AGGAGCGGACACGCCGAGCGCGGTCGATCTACCGGTCACGGCTTCAGCCG
GTGCCGCAGCAAGCGGAGTGGATAAGCTCGAAAGGCCCACCAGCAAGAAG
CCCACACTAGGTGCTAGCGAAATGATCGCCGCTTCTGTCCGGAACTTCAT
TACCGCCCCGCCCGACACCACCACCACCACCACAGATCCTCCGGCGAGGC
TAGGGTCGACAGCGACAGGCCAATCGTCGTCGGACATGGACGTCTTGTTC
GGCCGCCGACAGGAAGCCGACCGAGGGGACTGCATGCTGGCGGAGTCGGA
GGCAGAGTCGGAGGCGGAGGGGGCAAAGATCGCCGCCAGAAAGGACATCG
AAGCCAGGGCGGTTCCGGCTCACCTGAGCGCGGCCGCGGCGCTCGTTGTC
GCGGAACGCAACCGCCGCTGCGAGCTGTACCCGGAGACGGGGGGGGTGAT
GCACCGGTAACCGCTGCGAGCTGTACCCGGAGACGGGGGGGGTGATGCAC
CGGTAA
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