mRNA_C-linearis_contig11.1371.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1371.1
Unique NamemRNA_C-linearis_contig11.1371.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1371.1 vs. uniprot
Match: D8LKJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ4_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.560e-68
Identity = 145/250 (58.00%), Postives = 161/250 (64.40%), Query Frame = 1 
Query:    1 AILAGIDGCLRRWKASRDEGQAVLTELSNALLLRTYVDKGRHTRDSDVGSSGGAVWGALAHAGATVPRVSVAAEARARRLHGDLSALQDAMLAAAAGIRRHAQEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAAAECLDAKPARTAVGGVVVEAGNGEAGAVVGGGYGLMDLADAASEVAEMLLKEGLVTATVAQGVGQESHREDREALTVYAAAWMMQPYVDVRRVEELETMVRGRERGR 750
            A L  IDGCLRRWKA+R EGQAVLT+LSNALLLRTYVDKG         ++ GAVWGALA AG TV RVSVA E RARRLHGDLSALQDAM+AAA  +RRHA+E R                        XXXXXXXXX                              A VGGGY L+D+AD  S+VAEML+KE LVTATV QGVGQE  R+DREALTVYAAAWMMQPYVD  R++ELE MV G+ RG+
Sbjct:   25 ATLDEIDGCLRRWKAARHEGQAVLTDLSNALLLRTYVDKGXXXXXXXRAATDGAVWGALAGAGTTVSRVSVATEHRARRLHGDLSALQDAMVAAAGELRRHAREVRRRWVSARAGGEDHRTSGSSSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------AAVGGGYALVDVADTTSQVAEMLMKEALVTATVVQGVGQEHGRDDREALTVYAAAWMMQPYVDAGRLKELEVMVGGQGRGK 265
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKJ4_ECTSI1.560e-6858.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3204422..3205177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003180.1
Exons1
Model size756
Cds size756
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.5331013-CDS-C-linearis_contig11:3204421..32051771622927465.5331013-CDS-C-linearis_contig11:3204421..3205177Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3204422..3205177 +
1690879716.8992198-CDS-C-linearis_contig11:3204421..32051771690879716.8992198-CDS-C-linearis_contig11:3204421..3205177Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3204422..3205177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1371.1prot_C-linearis_contig11.1371.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3204422..3205177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1371.1

>prot_C-linearis_contig11.1371.1 ID=prot_C-linearis_contig11.1371.1|Name=mRNA_C-linearis_contig11.1371.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=252bp
AILAGIDGCLRRWKASRDEGQAVLTELSNALLLRTYVDKGRHTRDSDVGS
SGGAVWGALAHAGATVPRVSVAAEARARRLHGDLSALQDAMLAAAAGIRR
HAQEARRRCCRSDPAAQGESHQHSTPGGSSSGGGGGGGSNVAAAECLDAK
PARTAVGGVVVEAGNGEAGAVVGGGYGLMDLADAASEVAEMLLKEGLVTA
TVAQGVGQESHREDREALTVYAAAWMMQPYVDVRRVEELETMVRGRERGR
V*
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mRNA from alignment at C-linearis_contig11:3204422..3205177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1371.1 ID=mRNA_C-linearis_contig11.1371.1|Name=mRNA_C-linearis_contig11.1371.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at C-linearis_contig11:3204422..3205177+ (Chordaria linearis ClinC8C monoicous)
GCTATCTTGGCCGGGATAGACGGCTGCCTTCGCCGGTGGAAGGCCTCGCG
GGACGAGGGGCAGGCGGTCCTGACGGAGCTCAGCAACGCCCTCCTGCTCC
GGACGTACGTGGACAAGGGGCGCCACACCCGCGACAGCGATGTCGGCAGC
AGCGGTGGTGCGGTGTGGGGCGCCCTGGCGCACGCGGGCGCGACAGTGCC
GCGAGTCTCCGTCGCCGCCGAGGCGCGTGCTCGCCGACTGCACGGCGACC
TGAGCGCCCTCCAGGACGCCATGCTCGCCGCTGCCGCCGGGATCCGCCGG
CACGCGCAGGAGGCGCGGCGCCGGTGCTGCAGGTCGGACCCGGCCGCCCA
GGGCGAGAGCCATCAGCATTCCACCCCCGGCGGCAGCAGCAGTGGTGGCG
GCGGCGGCGGTGGCAGCAATGTTGCCGCGGCCGAATGTTTGGATGCTAAG
CCGGCTCGAACAGCGGTAGGCGGGGTGGTAGTCGAAGCGGGTAACGGCGA
GGCTGGTGCGGTGGTTGGAGGCGGTTATGGGCTGATGGACCTCGCCGATG
CTGCGTCTGAGGTAGCCGAGATGTTGCTCAAGGAGGGGTTGGTCACGGCC
ACCGTGGCGCAAGGGGTGGGCCAGGAGAGCCATAGGGAGGATAGGGAGGC
GCTGACGGTGTACGCCGCGGCGTGGATGATGCAGCCGTACGTTGACGTCC
GGCGGGTCGAAGAGCTCGAGACGATGGTTAGGGGGCGGGAGCGCGGGCGT
GTTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3204422..3205177+

>mRNA_C-linearis_contig11.1371.1 ID=mRNA_C-linearis_contig11.1371.1|Name=mRNA_C-linearis_contig11.1371.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at C-linearis_contig11:3204422..3205177+ (Chordaria linearis ClinC8C monoicous)
GCTATCTTGGCCGGGATAGACGGCTGCCTTCGCCGGTGGAAGGCCTCGCG
GGACGAGGGGCAGGCGGTCCTGACGGAGCTCAGCAACGCCCTCCTGCTCC
GGACGTACGTGGACAAGGGGCGCCACACCCGCGACAGCGATGTCGGCAGC
AGCGGTGGTGCGGTGTGGGGCGCCCTGGCGCACGCGGGCGCGACAGTGCC
GCGAGTCTCCGTCGCCGCCGAGGCGCGTGCTCGCCGACTGCACGGCGACC
TGAGCGCCCTCCAGGACGCCATGCTCGCCGCTGCCGCCGGGATCCGCCGG
CACGCGCAGGAGGCGCGGCGCCGGTGCTGCAGGTCGGACCCGGCCGCCCA
GGGCGAGAGCCATCAGCATTCCACCCCCGGCGGCAGCAGCAGTGGTGGCG
GCGGCGGCGGTGGCAGCAATGTTGCCGCGGCCGAATGTTTGGATGCTAAG
CCGGCTCGAACAGCGGTAGGCGGGGTGGTAGTCGAAGCGGGTAACGGCGA
GGCTGGTGCGGTGGTTGGAGGCGGTTATGGGCTGATGGACCTCGCCGATG
CTGCGTCTGAGGTAGCCGAGATGTTGCTCAAGGAGGGGTTGGTCACGGCC
ACCGTGGCGCAAGGGGTGGGCCAGGAGAGCCATAGGGAGGATAGGGAGGC
GCTGACGGTGTACGCCGCGGCGTGGATGATGCAGCCGTACGTTGACGTCC
GGCGGGTCGAAGAGCTCGAGACGATGGTTAGGGGGCGGGAGCGCGGGCGT
GTTTGAGCTATCTTGGCCGGGATAGACGGCTGCCTTCGCCGGTGGAAGGC
CTCGCGGGACGAGGGGCAGGCGGTCCTGACGGAGCTCAGCAACGCCCTCC
TGCTCCGGACGTACGTGGACAAGGGGCGCCACACCCGCGACAGCGATGTC
GGCAGCAGCGGTGGTGCGGTGTGGGGCGCCCTGGCGCACGCGGGCGCGAC
AGTGCCGCGAGTCTCCGTCGCCGCCGAGGCGCGTGCTCGCCGACTGCACG
GCGACCTGAGCGCCCTCCAGGACGCCATGCTCGCCGCTGCCGCCGGGATC
CGCCGGCACGCGCAGGAGGCGCGGCGCCGGTGCTGCAGGTCGGACCCGGC
CGCCCAGGGCGAGAGCCATCAGCATTCCACCCCCGGCGGCAGCAGCAGTG
GTGGCGGCGGCGGCGGTGGCAGCAATGTTGCCGCGGCCGAATGTTTGGAT
GCTAAGCCGGCTCGAACAGCGGTAGGCGGGGTGGTAGTCGAAGCGGGTAA
CGGCGAGGCTGGTGCGGTGGTTGGAGGCGGTTATGGGCTGATGGACCTCG
CCGATGCTGCGTCTGAGGTAGCCGAGATGTTGCTCAAGGAGGGGTTGGTC
ACGGCCACCGTGGCGCAAGGGGTGGGCCAGGAGAGCCATAGGGAGGATAG
GGAGGCGCTGACGGTGTACGCCGCGGCGTGGATGATGCAGCCGTACGTTG
ACGTCCGGCGGGTCGAAGAGCTCGAGACGATGGTTAGGGGGCGGGAGCGC
GGGCGTGTTTGA
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