mRNA_C-linearis_contig11.1362.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1362.1
Unique NamemRNA_C-linearis_contig11.1362.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: D7FXX0_ECTSI (CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX0_ECTSI)

HSP 1 Score: 461 bits (1186), Expect = 1.360e-160
Identity = 233/280 (83.21%), Postives = 249/280 (88.93%), Query Frame = 3
Query:   72 MLKADYSRAVALCKASIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDAQIL 911
            MLKADY RAVALCKASIDGGFDLT SHTS E LP+DA+ SLRRQM SRHIRKVD RCKQRT+EF+ QYRKGSRI+DIARQPGLRYSPYL+ARI VG LEP      +  LM TPSLI DERLRREVEE IS+DRD SPH+DRVRRG+GAEYEF+LQQKLRAR    GVAFESESDLR+KGAYKTPDMLLQ PMAVKGP NEW +VSWIDSKAMFGDE TYVQEHQSQLLSYVNRYGPGLVIYWFG+VETLVSP+FDGYKKDIMVKADFPSPIMLPD Q+L
Sbjct:    1 MLKADYHRAVALCKASIDGGFDLTTSHTSVESLPYDALQSLRRQMFSRHIRKVDWRCKQRTKEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGAA---IAQLMRTPSLILDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRAR----GVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVIVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLPDGQVL 273          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A7S2SDJ1_9STRA (CDAN1-interacting nuclease 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDJ1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 8.540e-58
Identity = 117/281 (41.64%), Postives = 169/281 (60.14%), Query Frame = 3
Query:   93 RAVALCKASIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPAD--TSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGP-TNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDAQIL*GTVC 926
            R  A C+ SI  G  +      +  +  +A+ SLRRQ+ +R IR   PR +  + E + +++KG  ++ IA+    R+ P+LLAR   GV+E     T K++G L+  P  I+D RLRREV+E+   D D +P  D +R  +G EYEF+LQ++L A    +GV +++E DL+ +G  KTPD  L+ P+AV+ P   EW  V WIDSKAMFGD  T+ +EH  QL SYV+R+GPGLV+YWFGF E L  P+ D    +I +  D P  ++LP   +   T C
Sbjct:   11 RVRAACERSIQAGDPIDWRTLVSPDIDIEAILSLRRQIHTRWIRANTPRVRGASAEILRRWQKGEHVISIAK--AFRHPPFLLAR---GVVERVCHVTGKRIGDLVRHPERITDPRLRREVQEAAEADPDCAPRSDAIREVIGREYEFVLQRRLEA----LGVPYQTEEDLKTQGHSKTPDAWLRAPVAVQDPRVGEWRQVCWIDSKAMFGDVETFGKEHSMQLESYVHRFGPGLVVYWFGFDEEL--PRLD----NICISTDVPIQMVLPGGDVSTSTAC 276          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: W7TNV0_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV0_9STRA)

HSP 1 Score: 168 bits (425), Expect = 5.640e-46
Identity = 104/246 (42.28%), Postives = 146/246 (59.35%), Query Frame = 3
Query:  159 AEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGF---VETLVSPKFDGYKKDIMVKADFPSPI 887
            ++ +  DA+ S+R Q L RH++ V    ++    +  QY  G  I +IAR+  L Y PYLLAR+ V VL    T  KV  LM  P LI++ RLRREV   I+ DRD SP  DRV R +G +YE  LQ +LRA    + + FE E+ LR +G  KTPD+ L VP+ V     +  +V+WIDSKA++G   T+  E   Q+  YVNR+GPG V++WFGF   V+ L+S +    +  ++V  DFP P+
Sbjct:   12 SQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARR--LCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRA----LAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQ----ECHVVVIDDFPPPV 247          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A4D9D1V9_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.030e-44
Identity = 103/246 (41.87%), Postives = 146/246 (59.35%), Query Frame = 3
Query:  159 AEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGF---VETLVSPKFDGYKKDIMVKADFPSPI 887
            ++ +  DA+ S+R Q L RH++ V    ++    +  QY  G  I +IAR+  + Y PYLLAR+ V VL   +T  KV  LM  P LI++ RLRREV   I+ D D SP  DRV R +G +YE  LQ +LRA    + V FE E+ LR +G  KTPD+ L VP+ V     +  +V+WIDSKA++G   T+  E   Q+  YVNR+GPG V++WFGF   V+ L+S +    +  ++V  DFP P+
Sbjct:   83 SQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGESIHEIARR--VCYPPYLLARMLVEVLCKVETRTKVTELMRAPHLIANHRLRREVMHCIAVDIDFSPGADRVSRSIGLDYERELQLRLRA----LAVPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSAQ----ECHVVVIDDFPPPV 318          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: V9E9B0_PHYPR (CDAN1-interacting nuclease 1 n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E9B0_PHYPR)

HSP 1 Score: 144 bits (362), Expect = 3.690e-36
Identity = 105/281 (37.37%), Postives = 148/281 (52.67%), Query Frame = 3
Query:  117 SIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDP--RCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFV------------GVLEPA--DTSKKVGHLMHTPSLISDE--RLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGP-TNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDA 902
            S+D   D T    S  +  F  +   +RQ+L    R      R ++  + ++A+Y  G  +  IA+   + +SP ++AR+ +             + + A  D S+      +   L  DE  R+ RE+ E IS+D   SP  DR+R  +G EYE++L + LR R +     FESE  LREKG  KTPD+ L +P+ VK   T +  +V+WIDSKAMFGD  T+  E+ SQL  YVNRYGPG+VIYWFG V  L S        DI++   FP  I LP A
Sbjct:   11 SLDAFPDATGPQLSVSEETFSVI---KRQLLHHQYRSELRLHRQEKTLKNYVARYSAGESMRQIAKS--VSFSPCMMARVVLDAKYGWSKTTISNLFKEAMKDESELEADAPNHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQL----VFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLHVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGHVAELSSDS------DILITDTFPQEISLPGA 276          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A0M0JP20_9EUKA (CDAN1-interacting nuclease 1 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JP20_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 5.450e-36
Identity = 90/221 (40.72%), Postives = 128/221 (57.92%), Query Frame = 3
Query:  168 LPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKK---VGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETL 821
            L F+A+ S+  Q      ++ D + +++ Q ++ ++  G  +V I    G+   P  LAR    VLE     KK   VG L+  P LI+D RLR EV  +I ED    PH+D  +  +G EYE +L QKLRA    +GV F SE  L+++G +KTPD LL VP+ V+G      +V+WIDSKA FGD  T+ + H  Q   Y++RY  GLV+YWFGF E++
Sbjct:   32 LSFEALTSVLGQKQLALTKRTDGQHREQAQRYVDRFLAGESLVAIGNSIGV--PPTKLARY---VLERHLGEKKGRDVGQLLKKPRLIADARLRHEVTMAIDEDPHFGPHVDAAKHIIGLEYEELLAQKLRA----LGVPFLSEEQLKQRGDFKTPDALLPVPLLVRG-----RVVNWIDSKATFGDPETHAEYHAKQFAGYLHRYDAGLVLYWFGFDESI 238          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A2P4XRT8_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.330e-35
Identity = 97/260 (37.31%), Postives = 140/260 (53.85%), Query Frame = 3
Query:  177 DAVNSLRRQMLSRHIRKVDP--RCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVL-------------EPADTSKKVGHLMHTPSLISDE--RLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTN-EWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDA 902
            +  N ++RQ+L R  R      R ++  ++++A++     +  IAR   + +SP ++AR+ +                E      ++    +   L  DE  R+ RE+ E I ED   SP  DR+R  LG EYE++L + LR R +     FESE  LREKG  KTPD+ L +P+ +K P + +  +V+WIDSKAMFGD  T+  E+ +QL  YVNRYGPG+VIYWFG V  L S        DI++   FP  I LP A
Sbjct:   27 ETFNVIKRQLLHRQFRSALRLHRQEKTLKKYVARFDASETMCHIARS--VAFSPCMMARLLLDAKYGWSKTTISNFFKEAMKDESEIETDTNRRGLSEDEFGRVMREIRECIDEDVHCSPLADRIRHNLGLEYEYLLLETLRNRQL----VFESEDMLREKGLSKTPDVRLLLPIGIKDPNSGQLHVVNWIDSKAMFGDRHTHETENANQLQGYVNRYGPGMVIYWFGHVARLSSDS------DILIADAFPREISLPGA 274          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A329SSK1_9STRA (CDAN1-interacting nuclease 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SSK1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.280e-35
Identity = 103/281 (36.65%), Postives = 147/281 (52.31%), Query Frame = 3
Query:  117 SIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDP--RCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFV------------GVLEPA--DTSKKVGHLMHTPSLISDE--RLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGP-TNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDA 902
            S+D   D T    S  +  F  +   +RQ+L R  R      R ++  + ++A+      +  IA+  G  +SP ++AR+ +             + + A  D S+      +   L  DE  R+ +E+ E I +D   SP  DR+R  +G EYE++L + LR R +     FESE  LREKG  KTPD+ L +P+ VK P + +  +V+WIDSKAMFGD  T+  E+ SQL  YVNRYGPG+VIYWFG V  L S        DI++   FP  I LP A
Sbjct:   11 SLDAFPDATGPQLSVSEETFSII---KRQVLHRQFRSELRLHRQEKTLKRYVARLGADESMGQIAKSVG--FSPCMMARLLLDAKYGWSKTTISNLFKEAMKDESELETDAPNRRGLSEDEYARVMKEIHECIDQDEIGSPLADRIRHNMGVEYEYLLLETLRNRQL----VFESEDMLREKGLSKTPDVRLLLPIGVKDPKSGQLQVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGHVAQLSSDS------DILITDTFPQEISLPGA 276          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A2V3IVI7_9FLOR (CDAN1-interacting nuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVI7_9FLOR)

HSP 1 Score: 139 bits (351), Expect = 9.410e-35
Identity = 88/240 (36.67%), Postives = 133/240 (55.42%), Query Frame = 3
Query:  168 LPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPI 887
            L  D +  +  Q+ +R + +   + K   + F+  ++ G  ++DIA    L  SP L+AR  V  L      K +   +  PS+I DERLR +V   I  D   SP  DR+R  LG EYE  L+ +++      G  FE+E DLR +G +KTPD+LL+VP++ +       ++ WIDSKA FGD+ T  Q++ S + SY+ R+GPG+VIYWFGF+E   S   +     ++V   FP+ I
Sbjct:   29 LSHDTIALIYEQLYTRQVARTFYQVKLHGKTFVKNFKNGQSLLDIAESFNL--SPVLVARK-VMELHLGLNRKLITQALREPSMIGDERLRADVCLCIELDEHCSPRTDRLRHALGLEYELRLRDEVKN----CGFEFETEDDLRNRGCHKTPDILLRVPISFRNK-----VIRWIDSKAKFGDKYTLNQDYTSSVSSYIGRFGPGMVIYWFGFIEDCDSGMLND--NGLVVMDRFPTEI 254          
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A3P3YCX7_PLABS (CDAN1-interacting nuclease 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YCX7_PLABS)

HSP 1 Score: 138 bits (348), Expect = 1.110e-34
Identity = 83/207 (40.10%), Postives = 125/207 (60.39%), Query Frame = 3
Query:  261 FIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKK-VGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFP 878
            ++ +Y++G  ++ IA+   L  +P LLARI +   E    S K +   +  P+L+ DERLR ++   +  D   SP  +R+R  LG EYEF+L + L       GV F+SE DLR +G  KTPD+ L+ P+AV+G      +V+WIDSKAMFGD  T + + Q+Q+  YV+RYGPG++I+WFG+V+ + S        DI++   FP
Sbjct:   68 YVQRYQEGEELISIAKSIDL--APCLLARIILR--ETLSMSPKDITQCLREPALVDDERLRNQLVRCVESDEHYSPSSERIRSALGLEYEFVLYESL----FNTGVPFDSEDDLRREGRPKTPDVRLRSPIAVRG-----RIVNWIDSKAMFGDVRT-LADCQNQVRGYVHRYGPGMIIFWFGYVQEVDSDP------DIILSHGFP 254          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXX0_ECTSI1.360e-16083.21CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus si... [more]
A0A7S2SDJ1_9STRA8.540e-5841.64CDAN1-interacting nuclease 1 n=2 Tax=Rhizochromuli... [more]
W7TNV0_9STRA5.640e-4642.28CDAN1-interacting nuclease 1 n=1 Tax=Nannochlorops... [more]
A0A4D9D1V9_9STRA2.030e-4441.87CDAN1-interacting nuclease 1 n=1 Tax=Nannochlorops... [more]
V9E9B0_PHYPR3.690e-3637.37CDAN1-interacting nuclease 1 n=4 Tax=Phytophthora ... [more]
A0A0M0JP20_9EUKA5.450e-3640.72CDAN1-interacting nuclease 1 (Fragment) n=1 Tax=Ch... [more]
A0A2P4XRT8_9STRA1.330e-3537.31CDAN1-interacting nuclease 1 n=1 Tax=Phytophthora ... [more]
A0A329SSK1_9STRA5.280e-3536.65CDAN1-interacting nuclease 1 n=2 Tax=Phytophthora ... [more]
A0A2V3IVI7_9FLOR9.410e-3536.67CDAN1-interacting nuclease 1 n=1 Tax=Gracilariopsi... [more]
A0A3P3YCX7_PLABS1.110e-3440.10CDAN1-interacting nuclease 1 n=1 Tax=Plasmodiophor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3124472..3129593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score463.8
Seed ortholog evalue5.8e-128
Seed eggNOG ortholog2880.D7FXX0
Preferred nameC15orf41
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function TPD sequence-motif
EggNOG OGs2R9SY@2759,arCOG04990@1
Ec32 ortholog descriptionProtein of unknown function with TPD sequence-motif
Ec32 orthologEc-16_005150.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1209
Cds size843
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1362.1prot_C-linearis_contig11.1362.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3125142..3129298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.9878945-UTR-C-linearis_contig11:3124471..31245361622927463.9878945-UTR-C-linearis_contig11:3124471..3124536Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3124472..3124536 +
1690879715.8478136-UTR-C-linearis_contig11:3124471..31245361690879715.8478136-UTR-C-linearis_contig11:3124471..3124536Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3124472..3124536 +
1622927464.0028045-UTR-C-linearis_contig11:3125135..31251411622927464.0028045-UTR-C-linearis_contig11:3125135..3125141Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3125136..3125141 +
1690879715.860013-UTR-C-linearis_contig11:3125135..31251411690879715.860013-UTR-C-linearis_contig11:3125135..3125141Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3125136..3125141 +
1622927464.138692-UTR-C-linearis_contig11:3129298..31295931622927464.138692-UTR-C-linearis_contig11:3129298..3129593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3129299..3129593 +
1690879715.9345615-UTR-C-linearis_contig11:3129298..31295931690879715.9345615-UTR-C-linearis_contig11:3129298..3129593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3129299..3129593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927464.01433-CDS-C-linearis_contig11:3125141..31252841622927464.01433-CDS-C-linearis_contig11:3125141..3125284Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3125142..3125284 +
1690879715.870997-CDS-C-linearis_contig11:3125141..31252841690879715.870997-CDS-C-linearis_contig11:3125141..3125284Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3125142..3125284 +
1622927464.0269315-CDS-C-linearis_contig11:3125765..31258161622927464.0269315-CDS-C-linearis_contig11:3125765..3125816Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3125766..3125816 +
1690879715.8795378-CDS-C-linearis_contig11:3125765..31258161690879715.8795378-CDS-C-linearis_contig11:3125765..3125816Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3125766..3125816 +
1622927464.039452-CDS-C-linearis_contig11:3126105..31262121622927464.039452-CDS-C-linearis_contig11:3126105..3126212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3126106..3126212 +
1690879715.8907404-CDS-C-linearis_contig11:3126105..31262121690879715.8907404-CDS-C-linearis_contig11:3126105..3126212Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3126106..3126212 +
1622927464.0570936-CDS-C-linearis_contig11:3126653..31268491622927464.0570936-CDS-C-linearis_contig11:3126653..3126849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3126654..3126849 +
1690879715.901023-CDS-C-linearis_contig11:3126653..31268491690879715.901023-CDS-C-linearis_contig11:3126653..3126849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3126654..3126849 +
1622927464.0687106-CDS-C-linearis_contig11:3127302..31274081622927464.0687106-CDS-C-linearis_contig11:3127302..3127408Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3127303..3127408 +
1690879715.9085631-CDS-C-linearis_contig11:3127302..31274081690879715.9085631-CDS-C-linearis_contig11:3127302..3127408Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3127303..3127408 +
1622927464.0802898-CDS-C-linearis_contig11:3127776..31278741622927464.0802898-CDS-C-linearis_contig11:3127776..3127874Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3127777..3127874 +
1690879715.917808-CDS-C-linearis_contig11:3127776..31278741690879715.917808-CDS-C-linearis_contig11:3127776..3127874Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3127777..3127874 +
1622927464.0913138-CDS-C-linearis_contig11:3129156..31292981622927464.0913138-CDS-C-linearis_contig11:3129156..3129298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3129157..3129298 +
1690879715.9257374-CDS-C-linearis_contig11:3129156..31292981690879715.9257374-CDS-C-linearis_contig11:3129156..3129298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3129157..3129298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1362.1

>prot_C-linearis_contig11.1362.1 ID=prot_C-linearis_contig11.1362.1|Name=mRNA_C-linearis_contig11.1362.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=281bp
MLKADYSRAVALCKASIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHI
RKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEP
ADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAE
YEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTN
EWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETL
VSPKFDGYKKDIMVKADFPSPIMLPDAQIL*
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mRNA from alignment at C-linearis_contig11:3124472..3129593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1362.1 ID=mRNA_C-linearis_contig11.1362.1|Name=mRNA_C-linearis_contig11.1362.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5122bp|location=Sequence derived from alignment at C-linearis_contig11:3124472..3129593+ (Chordaria linearis ClinC8C monoicous)
GCTCAAGCAAGCTCAGGCTGGATGGCAGGATATCGAGAGCACAGAGCCGC CGCGCGAAAAATAACGTATGTGTGTATATGTGCGCTTGATGGGAATCTGT TGCACTGCTGCCAAAGATGTGTTGTTTAGATGTTTTGCACACAAACCTGC GTAGGCTCCTGGATATAGACGAGTCCATAGTCTAGGTCTAGACCAATCTC GGTCTCGACCAAACACACGCACGACCTAACAGCAGATGATCGCTTCCACA AACTACGACCTGATGTCGCCTGCTGTGAAGTTGTACAGATATCTTTTGCG GTGGCTTATTGGTACCTTGGGTCTGGACTGTCGAGACAGCCCGCGTGTGG ATTTAGAGTAATAGCTACAACATCTGTATTGTAGCGGACTCCAGAAAAAG AGCCCATAGACTATAACAGATCTCCGCCGCCATGCTCACAGGTTTGAACT TGAATTCCAGACATATATATCTAGTGATGCAACATAGTTCACATGTTTCG CCCTTGTCACAACAGATGTATTTGGACGCTCCCCATGCCCTGTACATGTC CCGCAAACCCCGGCTGGATCACTGACATCCAAATTCCAAATTGAAACAAC TCGCTCCCCCGCCACGCGCATGATGCGTGCCACTTGTCTCGTCTCGTCCG GTACACCAAAATAGACTACCATGCTGAAGGCAGACTACAGCAGGGCCGTG GCGCTGTGCAAAGCGAGTATCGATGGGGGTTTCGACCTCACCGCGTCGCA CACCAGCGCGGAGAAGTTGCCCTTCGATGCGGTCAACAGCCTCCGGCGAC AGATGTTATCCAGGTGTGGCGGGGGTGCAGCTCCGATGATGTTGGCTCTG GTCCGCGGTATCACTCAACGTATGTTATATTTACTCTGCCTGGAATTCTC GAAAGTCTGCAGACAGCAGGCGAGGCGCTGCTGTGTATGGGTGGGGCTCG AAATGCTCTACTGCTGTCTGGTAGGGTTGAGGGTCAATGTAGGCCTTCAG ACGTAGCGTGCGGCAGTGGATACGAAGGCAGGAGTGACGGCACGTGTCGC CACGCTCTGACCAACGGCGCGTTGGGGGGGAATGGCGCCTGCGACCCCCT CCGCTAATGCCCGGCGATAACCCGGCGTGGTCTCTCGCTGTAAGTTTTTT TGTGGGATGCGAGGTCGTTGTTCTACTCGACTACAGCTTGGACGAGCAGT CAGCACACCGCTACTCTCCCTCTCCCTCGCTACTCCTCTTGTCGTTTTTG ACTGACGACTCCCGCCGTGTCGCCTCAATGTTTTGGTTCGCCAGACACAT TCGGAAGGTGGACCCGAGATGCAAACAGCGGACCCAGGAGTTTATGTGAG TCAGCACGCGTGCGAGTCGTGGAAGAAAAAATCCACTCATCAGCGTACCT GTTGTGGGAGGCATCTTGTGGCCGTGGGCTCGATCGCGACCGCCTCGCCT GCTGTAGGTGGACTGCAGTCCTACACCCCCACCCAACTATAAACCAAGGC CTTGCAGTCTAAAGGACAACCAGGCCTTGCACAACTGCCCGACTGGCTGG CTTTTAGTAGCTGACCACCACGCGCGTTCTCTCGTCGCGCTGGCCCGGGG TACTCGCACACTGCTGTGTCGTTACGCTCTGCAGAGCCCAGTACCGGAAG GGCTCGAGAATTGTCGACATCGCCCGGCAGCCGGGTCTGCGCTATTCCCC TTACTTGTTGGCGAGGATCTTTGTTGGAGTACTGGAACCAGGTGATTTTT TAAGGGGGAGGGAGGGGGGGGGGTCAAGACGAGTCGGAACACGCACAACA CCTTTTTGGTACAGCTATATAACAAGCCACCGCTGTCCTGCACCCAAGCG AGGCGCGTGCCAAGATGGTCATTGTAGTTGCACGGCTTGGGGAAGTGGCG TGAGCGAAATGATTTTCGTGCCAGAAAAGGCTGCCGGCCGGCCATAATTA AAAAAAAAAACGAAGATAACTTGGGACTACGAGCGATGCATATTCCACAA TGTCCTTTGCACGTGGTCCCACTTGTTCTCTCTGCTGTCGCTTTGAGTTT GTTCCCAACCTACCCTAACCGAATCGTCACCTTGCGCACCTGTGCCCCGC GGTCCTGAACTACTCTGTTTGTCTACTTCTCCAACCGCCCCTTTCTGCAA ACTTTTTCGTCGGCTCTATTGAAAAAAAGGAGCTGATACCTCGAAAAAGG TTGGGCACCTGATGCACACGCCTTCGCTCATCTCGGACGAAAGATTGCGG CGAGAGGTGGAGGAAAGCATCTCGGAGGACAGGGACAACTCCCCGCACAT GGACAGGGTCAGGAGAGGCCTGGGGGCCGAGTACGAATTTATTCTGCAGC AGAAGCTACGTGCCAGGCATGTATATATGTGCACCGAGGTTACAGCACCG AGGTTACAGCAGTAACGCCACTTACGCCATCGGAGCGGCCTTGACTAACG TAACGTAGGCTGAAGTGTAATTATTGGCGTTGCGTACTCAGAATGGTATT AGGTAGGTGTCGGCAACGATACAGGAGCAGGTCTAAACCGAAATCAACCC AGGTCTTCGCGCACGCCATCTTGCTCGTGCGGTATGTGTGTAGGGGGCAA TCCGATCGTTTCATTGCTCAAGCGATTTTTATCCCTCACTGTTTTTGTCC GTTTAAGAGTCGCACGCACGGCCAATGTTCTTGTTGTTTCAGGCGCCTCA CGTTCCGAGCGAATGATCTGCCTCCAAAAACGCCGTGTGTTCTCGTTGAG TGGTGCGGTGTCTGCTTCGCTTTCAACGCCAAATGGCCCCCCTGTCTCCG TTATTTTGTTATTTTCGTCGTTTTGGACCAGGGGTGTTGCCTTCGAATCT GAGTCCGACCTAAGAGAAAAGGGCGCGTACAAGACACCGGACATGCTGCT TCAGGTGCCCATGGCTGTCAAAGGACCGACAAATGAGGTGGGTTGATATT TACCAAGTATGATTAACAATGCACGTGCACACGGGTGTCTGCCCCAACAT ACTACTCCGTAAATATCTGAGGTGGGGTGTTCTTCATTCTACAACAATTC CAACCGGAGGATGCGGAAATTGGCTTTACTCCTCCGTGCTTGCCCGACCA GTGAAATGGGCACCACAAACGCAACTTGGCCCCTTCGTATAGGGCCGATA TCACAGGAGTGCAACTACTGCTGTACAGCTCACAAGATATCTTCACGACG ATGCTCTCAGTTTCACGGTGTTTTATGACCCCGGAAAATATCTCAACCTG CTGTCTGGCTTGATCAAGCATGCCCCCTCCACTTTTCTTTTTTTTTCGCT CGCAGTGGACGATGGTGTCTTGGATCGACAGCAAAGCCATGTTCGGCGAC GAGCTCACGTACGTACAGGAACACCAATCGCAGCTGCTCAGCTACGTTAA CAGGTGAGCGAGCACGTTTGCATTGCTGCGCGATAAAGTATTCTCGTTCT GTTTAGTGTTTGTCGCGCTCGTCCGGTGTTTCGAACAACAACAGCAGTTG AGTGTAGTTCGTGGGCATCCACACCCTTTTTTTGTTCAGCGCCTGTTTTT TTCGGTTGCCATCTTAAGCCGGTCACCCCGGTGGTCTAGTTGGTATCCCC GCACACCTTCTAGCGCCCAGGTGACGGGTTTGAATCCCGGCGTATGCGAT TTTTTCTAACAATAAAAACCGTGAGTTTTTCTCTCAAATACGTCCCTGGT TGTGGAAAGCGCTAGTCGTGCGTACACAGAGGGAAGAGATTGCCGCGCTC TTCTCGCATTAAAAATCGAAGGCGAAGCACCGCAGGAGGGGAGGGTGGGG GCCCTCTGGGAGAGGAACCCTTCTGCGTGACCACGGGCTAGAGCTCCTAT CCGGCAGAAATGCTGTGAGCTCTGGTTATATGTGAAGATAAAAAAAAAAA AAAATCTTGCATCTTGCATCTTGCATAGTATCGCAAGGGAGGTCTAGTCG TACGTGGAATTTTAGTGTGCGTTGCGCCTTGCATCTTTTCCGTGAACCTC TGCATGTGAGTGTGTGTGTTTGTGTAGTTTTGCAGCTTCCTTGTCTCGCT TCACTTTGTTATTGCTTTGTCTTCTGCAGGAGACTCAACCGCGAGACCAA TCAATTGCCTGGTGTTGATTCCTCCCGAGGCATTTGGAGGCATGATTTGA TTTATTTGGTTTTGTCTTTGGGTTGCTTTGTCATACACATAATATGTAGC TTGCCTTAGCCGGCAAGACCCAGGTTTCCAGGAGGCGTGCTCCTCTTTTG TGGCACGGACAACCCGGCGAAATACGATCCCTTGCACCGCGAGTCGCCTT ATTCACCGGTAGGATATGAAACGACGGTGCTTTCTTTGTCACCCCATCTC GCCACAGCCAGCAACGTACAAAGTTCCACACACTCCCGGAACGTTTTCCG CCAAAATATTCTCCACCGCCCGCGGTGGAAGAAAGCTGACTTAGAATTTC TCGGAAACACCCACCATGTTTTCATGAGATAAACGACAAGAGAGATGCCA CGAGAACCCAAGAATCGGCATACCTGGTACATACTTGTTGTGTCTTTGGA TCCCCCTTTTCTTCACAAGCCGGGGCGTTTTCTACATACACGTGCGTGGC CGGCCGGCTGGAAGATAAAACAAACAAACACCATGGCTTGCTTGTCGTGT GTCGTGTGTGTGCGTTGTGCGTGCACGTCGCCAAGGTACGGCCCCGGGCT GGTGATCTACTGGTTCGGTTTCGTGGAGACGCTTGTCTCCCCCAAGTTCG ACGGCTACAAGAAAGACATCATGGTCAAGGCGGACTTTCCCAGCCCGATC ATGCTCCCTGACGCCCAAATACTCTAGGGGACTGTTTGCACAGATACCGG GTGGTTTTGATTTTGGTGTCGGCCTGCAGCTGTTCATCGTCGTGTGTGTC GTCTGCGGTTTGTTAAGTAAGCCGGACAGGACACGAAGCAACAGCGGATA CAAGTAGGCGCGAAACATTTTTTTTTGGTTTGAAAGGCCTAGTACAGCAA TAGTGCCAGGTTGAAAATCTTGGTTCAACCTTCTACGGATTGTAAATTTA CGCTCAAAACAAGGTAAATGCACACACATACGTGTCGTGTTTGCGGTTGT TGCTTTTTTCTAGAGATATGGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:3124472..3129593+

>mRNA_C-linearis_contig11.1362.1 ID=mRNA_C-linearis_contig11.1362.1|Name=mRNA_C-linearis_contig11.1362.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at C-linearis_contig11:3124472..3129593+ (Chordaria linearis ClinC8C monoicous)
ATGCTGAAGGCAGACTACAGCAGGGCCGTGGCGCTGTGCAAAGCGAGTAT
CGATGGGGGTTTCGACCTCACCGCGTCGCACACCAGCGCGGAGAAGTTGC
CCTTCGATGCGGTCAACAGCCTCCGGCGACAGATGTTATCCAGATGCTGA
AGGCAGACTACAGCAGGGCCGTGGCGCTGTGCAAAGCGAGTATCGATGGG
GGTTTCGACCTCACCGCGTCGCACACCAGCGCGGAGAAGTTGCCCTTCGA
TGCGGTCAACAGCCTCCGGCGACAGATGTTATCCAGACACATTCGGAAGG
TGGACCCGAGATGCAAACAGCGGACCCAGGAGTTTATACACATTCGGAAG
GTGGACCCGAGATGCAAACAGCGGACCCAGGAGTTTATAGCCCAGTACCG
GAAGGGCTCGAGAATTGTCGACATCGCCCGGCAGCCGGGTCTGCGCTATT
CCCCTTACTTGTTGGCGAGGATCTTTGTTGGAGTACTGGAACCAGAGCCC
AGTACCGGAAGGGCTCGAGAATTGTCGACATCGCCCGGCAGCCGGGTCTG
CGCTATTCCCCTTACTTGTTGGCGAGGATCTTTGTTGGAGTACTGGAACC
AGCTGATACCTCGAAAAAGGTTGGGCACCTGATGCACACGCCTTCGCTCA
TCTCGGACGAAAGATTGCGGCGAGAGGTGGAGGAAAGCATCTCGGAGGAC
AGGGACAACTCCCCGCACATGGACAGGGTCAGGAGAGGCCTGGGGGCCGA
GTACGAATTTATTCTGCAGCAGAAGCTACGTGCCAGGCATGTATATATCT
GATACCTCGAAAAAGGTTGGGCACCTGATGCACACGCCTTCGCTCATCTC
GGACGAAAGATTGCGGCGAGAGGTGGAGGAAAGCATCTCGGAGGACAGGG
ACAACTCCCCGCACATGGACAGGGTCAGGAGAGGCCTGGGGGCCGAGTAC
GAATTTATTCTGCAGCAGAAGCTACGTGCCAGGCATGTATATATGGGTGT
TGCCTTCGAATCTGAGTCCGACCTAAGAGAAAAGGGCGCGTACAAGACAC
CGGACATGCTGCTTCAGGTGCCCATGGCTGTCAAAGGACCGACAAATGAG
GGGTGTTGCCTTCGAATCTGAGTCCGACCTAAGAGAAAAGGGCGCGTACA
AGACACCGGACATGCTGCTTCAGGTGCCCATGGCTGTCAAAGGACCGACA
AATGAGTGGACGATGGTGTCTTGGATCGACAGCAAAGCCATGTTCGGCGA
CGAGCTCACGTACGTACAGGAACACCAATCGCAGCTGCTCAGCTACGTTA
ACAGTGGACGATGGTGTCTTGGATCGACAGCAAAGCCATGTTCGGCGACG
AGCTCACGTACGTACAGGAACACCAATCGCAGCTGCTCAGCTACGTTAAC
AGGTACGGCCCCGGGCTGGTGATCTACTGGTTCGGTTTCGTGGAGACGCT
TGTCTCCCCCAAGTTCGACGGCTACAAGAAAGACATCATGGTCAAGGCGG
ACTTTCCCAGCCCGATCATGCTCCCTGACGCCCAAATACTCTAGGTACGG
CCCCGGGCTGGTGATCTACTGGTTCGGTTTCGTGGAGACGCTTGTCTCCC
CCAAGTTCGACGGCTACAAGAAAGACATCATGGTCAAGGCGGACTTTCCC
AGCCCGATCATGCTCCCTGACGCCCAAATACTCTAG
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