mRNA_C-linearis_contig11.1362.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: D7FXX0_ECTSI (CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX0_ECTSI) HSP 1 Score: 461 bits (1186), Expect = 1.360e-160 Identity = 233/280 (83.21%), Postives = 249/280 (88.93%), Query Frame = 3
Query: 72 MLKADYSRAVALCKASIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDAQIL 911
MLKADY RAVALCKASIDGGFDLT SHTS E LP+DA+ SLRRQM SRHIRKVD RCKQRT+EF+ QYRKGSRI+DIARQPGLRYSPYL+ARI VG LEP + LM TPSLI DERLRREVEE IS+DRD SPH+DRVRRG+GAEYEF+LQQKLRAR GVAFESESDLR+KGAYKTPDMLLQ PMAVKGP NEW +VSWIDSKAMFGDE TYVQEHQSQLLSYVNRYGPGLVIYWFG+VETLVSP+FDGYKKDIMVKADFPSPIMLPD Q+L
Sbjct: 1 MLKADYHRAVALCKASIDGGFDLTTSHTSVESLPYDALQSLRRQMFSRHIRKVDWRCKQRTKEFLTQYRKGSRIIDIARQPGLRYSPYLMARILVGALEPGAA---IAQLMRTPSLILDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRAR----GVAFESESDLRQKGAYKTPDMLLQTPMAVKGPRNEWVIVSWIDSKAMFGDEHTYVQEHQSQLLSYVNRYGPGLVIYWFGYVETLVSPEFDGYKKDIMVKADFPSPIMLPDGQVL 273
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A7S2SDJ1_9STRA (CDAN1-interacting nuclease 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDJ1_9STRA) HSP 1 Score: 199 bits (506), Expect = 8.540e-58 Identity = 117/281 (41.64%), Postives = 169/281 (60.14%), Query Frame = 3
Query: 93 RAVALCKASIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPAD--TSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGP-TNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDAQIL*GTVC 926
R A C+ SI G + + + +A+ SLRRQ+ +R IR PR + + E + +++KG ++ IA+ R+ P+LLAR GV+E T K++G L+ P I+D RLRREV+E+ D D +P D +R +G EYEF+LQ++L A +GV +++E DL+ +G KTPD L+ P+AV+ P EW V WIDSKAMFGD T+ +EH QL SYV+R+GPGLV+YWFGF E L P+ D +I + D P ++LP + T C
Sbjct: 11 RVRAACERSIQAGDPIDWRTLVSPDIDIEAILSLRRQIHTRWIRANTPRVRGASAEILRRWQKGEHVISIAK--AFRHPPFLLAR---GVVERVCHVTGKRIGDLVRHPERITDPRLRREVQEAAEADPDCAPRSDAIREVIGREYEFVLQRRLEA----LGVPYQTEEDLKTQGHSKTPDAWLRAPVAVQDPRVGEWRQVCWIDSKAMFGDVETFGKEHSMQLESYVHRFGPGLVVYWFGFDEEL--PRLD----NICISTDVPIQMVLPGGDVSTSTAC 276
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: W7TNV0_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV0_9STRA) HSP 1 Score: 168 bits (425), Expect = 5.640e-46 Identity = 104/246 (42.28%), Postives = 146/246 (59.35%), Query Frame = 3
Query: 159 AEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGF---VETLVSPKFDGYKKDIMVKADFPSPI 887
++ + DA+ S+R Q L RH++ V ++ + QY G I +IAR+ L Y PYLLAR+ V VL T KV LM P LI++ RLRREV I+ DRD SP DRV R +G +YE LQ +LRA + + FE E+ LR +G KTPD+ L VP+ V + +V+WIDSKA++G T+ E Q+ YVNR+GPG V++WFGF V+ L+S + + ++V DFP P+
Sbjct: 12 SQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGQSIHEIARR--LCYPPYLLARMLVEVLCKVGTRTKVTELMRAPHLIANHRLRREVMHCIAVDRDFSPGADRVSRSIGLDYERELQLRLRA----LAIPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSLQ----ECHVVVIDDFPPPV 247
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A4D9D1V9_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V9_9STRA) HSP 1 Score: 166 bits (420), Expect = 2.030e-44 Identity = 103/246 (41.87%), Postives = 146/246 (59.35%), Query Frame = 3
Query: 159 AEKLPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGF---VETLVSPKFDGYKKDIMVKADFPSPI 887
++ + DA+ S+R Q L RH++ V ++ + QY G I +IAR+ + Y PYLLAR+ V VL +T KV LM P LI++ RLRREV I+ D D SP DRV R +G +YE LQ +LRA + V FE E+ LR +G KTPD+ L VP+ V + +V+WIDSKA++G T+ E Q+ YVNR+GPG V++WFGF V+ L+S + + ++V DFP P+
Sbjct: 83 SQDVSLDALLSIRHQRLVRHVKAVSGDHRRHVLAYCRQYEAGESIHEIARR--VCYPPYLLARMLVEVLCKVETRTKVTELMRAPHLIANHRLRREVMHCIAVDIDFSPGADRVSRSIGLDYERELQLRLRA----LAVPFEDEAMLRARGLPKTPDVRLSVPLGVVDACGKHHVVNWIDSKALYGTRETFEGEVLPQVTRYVNRFGPGCVVFWFGFCPGVQELLSAQ----ECHVVVIDDFPPPV 318
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: V9E9B0_PHYPR (CDAN1-interacting nuclease 1 n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E9B0_PHYPR) HSP 1 Score: 144 bits (362), Expect = 3.690e-36 Identity = 105/281 (37.37%), Postives = 148/281 (52.67%), Query Frame = 3
Query: 117 SIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDP--RCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFV------------GVLEPA--DTSKKVGHLMHTPSLISDE--RLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGP-TNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDA 902
S+D D T S + F + +RQ+L R R ++ + ++A+Y G + IA+ + +SP ++AR+ + + + A D S+ + L DE R+ RE+ E IS+D SP DR+R +G EYE++L + LR R + FESE LREKG KTPD+ L +P+ VK T + +V+WIDSKAMFGD T+ E+ SQL YVNRYGPG+VIYWFG V L S DI++ FP I LP A
Sbjct: 11 SLDAFPDATGPQLSVSEETFSVI---KRQLLHHQYRSELRLHRQEKTLKNYVARYSAGESMRQIAKS--VSFSPCMMARVVLDAKYGWSKTTISNLFKEAMKDESELEADAPNHRGLSEDEYSRVVREIRECISKDEIGSPLADRIRHNMGVEYEYLLLETLRNRQL----VFESEDMLREKGLSKTPDVRLLLPIGVKSSKTGKLHVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGHVAELSSDS------DILITDTFPQEISLPGA 276
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A0M0JP20_9EUKA (CDAN1-interacting nuclease 1 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JP20_9EUKA) HSP 1 Score: 142 bits (358), Expect = 5.450e-36 Identity = 90/221 (40.72%), Postives = 128/221 (57.92%), Query Frame = 3
Query: 168 LPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKK---VGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETL 821
L F+A+ S+ Q ++ D + +++ Q ++ ++ G +V I G+ P LAR VLE KK VG L+ P LI+D RLR EV +I ED PH+D + +G EYE +L QKLRA +GV F SE L+++G +KTPD LL VP+ V+G +V+WIDSKA FGD T+ + H Q Y++RY GLV+YWFGF E++
Sbjct: 32 LSFEALTSVLGQKQLALTKRTDGQHREQAQRYVDRFLAGESLVAIGNSIGV--PPTKLARY---VLERHLGEKKGRDVGQLLKKPRLIADARLRHEVTMAIDEDPHFGPHVDAAKHIIGLEYEELLAQKLRA----LGVPFLSEEQLKQRGDFKTPDALLPVPLLVRG-----RVVNWIDSKATFGDPETHAEYHAKQFAGYLHRYDAGLVLYWFGFDESI 238
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A2P4XRT8_9STRA (CDAN1-interacting nuclease 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT8_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.330e-35 Identity = 97/260 (37.31%), Postives = 140/260 (53.85%), Query Frame = 3
Query: 177 DAVNSLRRQMLSRHIRKVDP--RCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVL-------------EPADTSKKVGHLMHTPSLISDE--RLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTN-EWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDA 902
+ N ++RQ+L R R R ++ ++++A++ + IAR + +SP ++AR+ + E ++ + L DE R+ RE+ E I ED SP DR+R LG EYE++L + LR R + FESE LREKG KTPD+ L +P+ +K P + + +V+WIDSKAMFGD T+ E+ +QL YVNRYGPG+VIYWFG V L S DI++ FP I LP A
Sbjct: 27 ETFNVIKRQLLHRQFRSALRLHRQEKTLKKYVARFDASETMCHIARS--VAFSPCMMARLLLDAKYGWSKTTISNFFKEAMKDESEIETDTNRRGLSEDEFGRVMREIRECIDEDVHCSPLADRIRHNLGLEYEYLLLETLRNRQL----VFESEDMLREKGLSKTPDVRLLLPIGIKDPNSGQLHVVNWIDSKAMFGDRHTHETENANQLQGYVNRYGPGMVIYWFGHVARLSSDS------DILIADAFPREISLPGA 274
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A329SSK1_9STRA (CDAN1-interacting nuclease 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SSK1_9STRA) HSP 1 Score: 140 bits (354), Expect = 5.280e-35 Identity = 103/281 (36.65%), Postives = 147/281 (52.31%), Query Frame = 3
Query: 117 SIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIRKVDP--RCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFV------------GVLEPA--DTSKKVGHLMHTPSLISDE--RLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGP-TNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPIMLPDA 902
S+D D T S + F + +RQ+L R R R ++ + ++A+ + IA+ G +SP ++AR+ + + + A D S+ + L DE R+ +E+ E I +D SP DR+R +G EYE++L + LR R + FESE LREKG KTPD+ L +P+ VK P + + +V+WIDSKAMFGD T+ E+ SQL YVNRYGPG+VIYWFG V L S DI++ FP I LP A
Sbjct: 11 SLDAFPDATGPQLSVSEETFSII---KRQVLHRQFRSELRLHRQEKTLKRYVARLGADESMGQIAKSVG--FSPCMMARLLLDAKYGWSKTTISNLFKEAMKDESELETDAPNRRGLSEDEYARVMKEIHECIDQDEIGSPLADRIRHNMGVEYEYLLLETLRNRQL----VFESEDMLREKGLSKTPDVRLLLPIGVKDPKSGQLQVVNWIDSKAMFGDRHTHETENASQLQGYVNRYGPGMVIYWFGHVAQLSSDS------DILITDTFPQEISLPGA 276
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A2V3IVI7_9FLOR (CDAN1-interacting nuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVI7_9FLOR) HSP 1 Score: 139 bits (351), Expect = 9.410e-35 Identity = 88/240 (36.67%), Postives = 133/240 (55.42%), Query Frame = 3
Query: 168 LPFDAVNSLRRQMLSRHIRKVDPRCKQRTQEFIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKKVGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFPSPI 887
L D + + Q+ +R + + + K + F+ ++ G ++DIA L SP L+AR V L K + + PS+I DERLR +V I D SP DR+R LG EYE L+ +++ G FE+E DLR +G +KTPD+LL+VP++ + ++ WIDSKA FGD+ T Q++ S + SY+ R+GPG+VIYWFGF+E S + ++V FP+ I
Sbjct: 29 LSHDTIALIYEQLYTRQVARTFYQVKLHGKTFVKNFKNGQSLLDIAESFNL--SPVLVARK-VMELHLGLNRKLITQALREPSMIGDERLRADVCLCIELDEHCSPRTDRLRHALGLEYELRLRDEVKN----CGFEFETEDDLRNRGCHKTPDILLRVPISFRNK-----VIRWIDSKAKFGDKYTLNQDYTSSVSSYIGRFGPGMVIYWFGFIEDCDSGMLND--NGLVVMDRFPTEI 254
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Match: A0A3P3YCX7_PLABS (CDAN1-interacting nuclease 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YCX7_PLABS) HSP 1 Score: 138 bits (348), Expect = 1.110e-34 Identity = 83/207 (40.10%), Postives = 125/207 (60.39%), Query Frame = 3
Query: 261 FIAQYRKGSRIVDIARQPGLRYSPYLLARIFVGVLEPADTSKK-VGHLMHTPSLISDERLRREVEESISEDRDNSPHMDRVRRGLGAEYEFILQQKLRARHVYMGVAFESESDLREKGAYKTPDMLLQVPMAVKGPTNEWTMVSWIDSKAMFGDELTYVQEHQSQLLSYVNRYGPGLVIYWFGFVETLVSPKFDGYKKDIMVKADFP 878
++ +Y++G ++ IA+ L +P LLARI + E S K + + P+L+ DERLR ++ + D SP +R+R LG EYEF+L + L GV F+SE DLR +G KTPD+ L+ P+AV+G +V+WIDSKAMFGD T + + Q+Q+ YV+RYGPG++I+WFG+V+ + S DI++ FP
Sbjct: 68 YVQRYQEGEELISIAKSIDL--APCLLARIILR--ETLSMSPKDITQCLREPALVDDERLRNQLVRCVESDEHYSPSSERIRSALGLEYEFVLYESL----FNTGVPFDSEDDLRREGRPKTPDVRLRSPIAVRG-----RIVNWIDSKAMFGDVRT-LADCQNQVRGYVHRYGPGMIIFWFGYVQEVDSDP------DIILSHGFP 254 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1362.1 >prot_C-linearis_contig11.1362.1 ID=prot_C-linearis_contig11.1362.1|Name=mRNA_C-linearis_contig11.1362.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=281bp MLKADYSRAVALCKASIDGGFDLTASHTSAEKLPFDAVNSLRRQMLSRHIback to top mRNA from alignment at C-linearis_contig11:3124472..3129593+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1362.1 ID=mRNA_C-linearis_contig11.1362.1|Name=mRNA_C-linearis_contig11.1362.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5122bp|location=Sequence derived from alignment at C-linearis_contig11:3124472..3129593+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:3124472..3129593+ >mRNA_C-linearis_contig11.1362.1 ID=mRNA_C-linearis_contig11.1362.1|Name=mRNA_C-linearis_contig11.1362.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at C-linearis_contig11:3124472..3129593+ (Chordaria linearis ClinC8C monoicous)back to top |