mRNA_C-linearis_contig11.1354.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1354.1
Unique NamemRNA_C-linearis_contig11.1354.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: D8LKM7_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKM7_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 4.110e-119
Identity = 192/229 (83.84%), Postives = 199/229 (86.90%), Query Frame = 2 
Query:  104 MALSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPFPQKEQSYGSMTPLKQVVTVKRKEEAPKASTAXXXXXAGDGAPAGTXXXVAEGGAVG--EVANKMDGLSVDSTSASA 784
            MALSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGY+IND+EKGYYADGEDAYDMRLPFPQK QSYG+MTPLKQVV VKRKEEAPKAS       A   A  G      EGGA G  E+A+ M  LSV + +  A
Sbjct:    1 MALSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYQINDVEKGYYADGEDAYDMRLPFPQKGQSYGAMTPLKQVVAVKRKEEAPKASAPVAAGGAAVAAREGEGQG-GEGGAEGVEEIASSMGELSVGAGAEKA 228
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: A0A7S1ZI07_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZI07_TRICV)

HSP 1 Score: 254 bits (650), Expect = 4.160e-77
Identity = 122/149 (81.88%), Postives = 132/149 (88.59%), Query Frame = 2 
Query:  116 IRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPF 562
            +R ATVDDL+QMQ  NLWCLPENYQMKYY YH+LSWPQLL+VAEDH GK+VGYVLAKMEED + PPHGHITSLAVLRTHRKRGIAT LMR SQL M++ F ARYVSLHVR+SNRAAFHLY  TL YEIND+EKGYYADGEDAYDMR  F
Sbjct:    4 VRTATVDDLLQMQQTNLWCLPENYQMKYYFYHLLSWPQLLWVAEDHDGKVVGYVLAKMEEDTSQPPHGHITSLAVLRTHRKRGIATALMRRSQLEMKDVFSARYVSLHVRKSNRAAFHLYTQTLKYEINDVEKGYYADGEDAYDMRCMF 152
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: A0A6U3QFY3_9STRA (Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3QFY3_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.450e-75
Identity = 122/149 (81.88%), Postives = 132/149 (88.59%), Query Frame = 2 
Query:  116 IRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPF 562
            IR ATVDDLIQMQT NLWCLPENYQMKYY YH+LSWPQLL+VAED+  KIVGYVLAKMEED  VPPHGHITSLAVLRTHRKRGIAT LMR SQL M++ F A+YVSLHVR+SNRAAFHLY  TL YEI+D+E+GYYADGEDAYDMR  F
Sbjct:    4 IRMATVDDLIQMQTTNLWCLPENYQMKYYFYHLLSWPQLLWVAEDYDSKIVGYVLAKMEEDDKVPPHGHITSLAVLRTHRKRGIATSLMRRSQLEMEQVFGAKYVSLHVRKSNRAAFHLYTKTLRYEIHDVERGYYADGEDAYDMRCVF 152
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: A0A7S4N2F3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N2F3_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.740e-75
Identity = 122/150 (81.33%), Postives = 131/150 (87.33%), Query Frame = 2 
Query:  116 IRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANV-PPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPF 562
            IRQATVDDL+QMQ  NLWCLPENYQMKYY YH+LSWPQLL+VAEDH GK+VGYVLAKMEED    PPHGHITSLAVLRTHRKRGIAT LMR SQL M++ F A+YVSLHVR+SNRAAFHLY  TL Y IND+EKGYYADGEDAYDMR  F
Sbjct:    4 IRQATVDDLLQMQQTNLWCLPENYQMKYYFYHLLSWPQLLWVAEDHDGKVVGYVLAKMEEDTTQQPPHGHITSLAVLRTHRKRGIATALMRRSQLEMKDVFSAKYVSLHVRKSNRAAFHLYTQTLKYAINDVEKGYYADGEDAYDMRCTF 153
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: A0A836C9I5_9STRA (Acyl-CoA N-acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I5_9STRA)

HSP 1 Score: 248 bits (632), Expect = 9.990e-75
Identity = 122/151 (80.79%), Postives = 134/151 (88.74%), Query Frame = 2 
Query:  104 MALSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRL 556
            MA+SIR ATV+DL+QMQ  NLWCLPENYQMKYY+YHVLSWPQLL VAED+KGKIVGYVLAKMEEDA VP HGHITSLAVLRTHRKRGIAT LMR SQ  M E+F A +VSLHVR+SN AAFHLY  TLGY+I ++EKGYYADGEDAYDM+L
Sbjct:    1 MAVSIRPATVEDLLQMQNTNLWCLPENYQMKYYMYHVLSWPQLLQVAEDYKGKIVGYVLAKMEEDAEVP-HGHITSLAVLRTHRKRGIATMLMRASQQSMAETFAADHVSLHVRKSNAAAFHLYTETLGYQIREVEKGYYADGEDAYDMKL 150
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: A0A024UP27_9STRA (N-acetyltransferase domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UP27_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.960e-74
Identity = 119/152 (78.29%), Postives = 132/152 (86.84%), Query Frame = 2 
Query:  116 IRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPFPQK 571
            IR ATV DL+ MQ ANLWCLPENYQMKYY YH++SWPQLL+VAEDH GKIVGYVLAKMEEDA VP HGHITSLAVLRTHRK GIAT+LM+ +Q  M E+F+A YVSLHVRE N AAFHLY+ TL Y++ DIEKGYYADGEDAYDMRLPF +K
Sbjct:    4 IRNATVPDLLAMQNANLWCLPENYQMKYYYYHIMSWPQLLYVAEDHHGKIVGYVLAKMEEDATVP-HGHITSLAVLRTHRKCGIATKLMKAAQRAMVENFKAEYVSLHVREGNAAAFHLYRKTLEYQVYDIEKGYYADGEDAYDMRLPFTEK 154
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: A0A7S2NVS7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVS7_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.320e-74
Identity = 120/153 (78.43%), Postives = 129/153 (84.31%), Query Frame = 2 
Query:  116 IRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPFPQKE 574
            IRQATV+DL+ MQ  NLWCLPENYQMKYY YH+LSWPQLL+VAED   KIVGYVLAKMEED   PPHGHITSLAVLRTHRKRGIAT LM+CSQ  M + F A YVSLHVR SN+AAFHLY  TL YEIND+EKGYYADGEDAYDMR  F +KE
Sbjct:    4 IRQATVEDLLSMQNTNLWCLPENYQMKYYFYHMLSWPQLLWVAEDSNKKIVGYVLAKMEEDETQPPHGHITSLAVLRTHRKRGIATMLMQCSQREMSDVFSAEYVSLHVRRSNKAAFHLYTETLKYEINDVEKGYYADGEDAYDMRCYFRKKE 156
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: K3WV96_GLOUD (N-acetyltransferase domain-containing protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WV96_GLOUD)

HSP 1 Score: 245 bits (625), Expect = 1.540e-73
Identity = 118/154 (76.62%), Postives = 133/154 (86.36%), Query Frame = 2 
Query:  110 LSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPFPQK 571
            +SIR ATV+DL+QMQ ANLWCLPENYQMKYY YH+++WPQLL VAEDH GKIVGYVLAKMEE+A+VP HGHITSLAVLRTHRK GIAT+LM+ +Q  M ESF A YVSLHVRE N AA HLY+ TL Y++ DIEKGYYADGEDAYDMR PF +K
Sbjct:    2 VSIRNATVEDLVQMQNANLWCLPENYQMKYYFYHIMTWPQLLQVAEDHNGKIVGYVLAKMEEEASVP-HGHITSLAVLRTHRKCGIATKLMKAAQRAMVESFNAEYVSLHVREGNAAAIHLYRRTLEYQVYDIEKGYYADGEDAYDMRKPFTEK 154
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: B8BYZ2_THAPS (N-acetyltransferase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYZ2_THAPS)

HSP 1 Score: 244 bits (622), Expect = 3.030e-73
Identity = 121/165 (73.33%), Postives = 138/165 (83.64%), Query Frame = 2 
Query:  110 LSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPF-PQKEQSYGSMTPL 601
            ++IR A V+DLI MQ  NLWCLPENYQMKYY YH+LSWPQLL+VAED+ G+IVGYVLAKMEED   PPHGHITSLAVLRTHRKRGIAT LMR SQ+ M E F A++VSLHVR+SNRAAFHLY  TL Y+INDIE+GYYADGEDAYDMR  F  +KE+   ++T L
Sbjct:    2 VNIRMANVNDLIDMQQCNLWCLPENYQMKYYFYHMLSWPQLLWVAEDYDGRIVGYVLAKMEEDETKPPHGHITSLAVLRTHRKRGIATALMRRSQIEMNEVFGAQFVSLHVRKSNRAAFHLYAETLKYKINDIERGYYADGEDAYDMRCTFGEEKEEEKSALTEL 166
[Close]
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Match: A0A448ZQT4_9STRA (N-acetyltransferase domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZQT4_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.810e-73
Identity = 119/154 (77.27%), Postives = 131/154 (85.06%), Query Frame = 2 
Query:  110 LSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDHKGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCMQESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMRLPFPQK 571
            +SIRQATV DL+Q+QT NLWCLPENYQMKYY YH+LSWPQLL+VAED  GKIVGYVLAKMEED   P HGHITSL+VLRTHRKRGIAT LMR SQ  M + F + YVSLHVR+SNRAAFHLY  TL YE+ND+EKGYYADGEDAYDMR  F Q+
Sbjct:    2 VSIRQATVQDLLQIQTTNLWCLPENYQMKYYFYHLLSWPQLLWVAEDFDGKIVGYVLAKMEEDETQPKHGHITSLSVLRTHRKRGIATALMRRSQKEMADVFGSEYVSLHVRKSNRAAFHLYSVTLQYEVNDVEKGYYADGEDAYDMRCYFKQR 155
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKM7_ECTSI4.110e-11983.84N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7S1ZI07_TRICV4.160e-7781.88Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U3QFY3_9STRA1.450e-7581.88Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID... [more]
A0A7S4N2F3_9STRA3.740e-7581.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A836C9I5_9STRA9.990e-7580.79Acyl-CoA N-acyltransferase n=1 Tax=Tribonema minus... [more]
A0A024UP27_9STRA1.960e-7478.29N-acetyltransferase domain-containing protein n=8 ... [more]
A0A7S2NVS7_9STRA2.320e-7478.43Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K3WV96_GLOUD1.540e-7376.62N-acetyltransferase domain-containing protein n=3 ... [more]
B8BYZ2_THAPS3.030e-7373.33N-acetyltransferase domain-containing protein n=1 ... [more]
A0A448ZQT4_9STRA3.810e-7377.27N-acetyltransferase domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3073349..3077390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.9
Seed ortholog evalue3.6e-99
Seed eggNOG ortholog2880.D8LKM7
Preferred nameNAA11
KEGG koko:K20791
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0007276,GO:0007281,GO:0007292,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0017198,GO:0018002,GO:0018193,GO:0018200,GO:0018205,GO:0018206,GO:0018209,GO:0018393,GO:0018394,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022626,GO:0030154,GO:0030920,GO:0031248,GO:0031365,GO:0031414,GO:0031415,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043543,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044703,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051604,GO:0051704,GO:0061606,GO:0071704,GO:0071840,GO:1901564,GO:1902493,GO:1902494,GO:1990189,GO:1990190,GO:1990234,GO:1990904
EggNOG free text desc.N-terminal peptidyl-glutamic acid acetylation
EggNOG OGsCOG0456@1,KOG3235@2759
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-16_003580.1
EC2.3.1.255
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons4
Model size2128
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1354.1prot_C-linearis_contig11.1354.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3074681..3077287 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.2337973-UTR-C-linearis_contig11:3073348..30746801622927463.2337973-UTR-C-linearis_contig11:3073348..3074680Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3073349..3074680 -
1690879715.4020646-UTR-C-linearis_contig11:3073348..30746801690879715.4020646-UTR-C-linearis_contig11:3073348..3074680Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3073349..3074680 -
1622927463.2974257-UTR-C-linearis_contig11:3077287..30773901622927463.2974257-UTR-C-linearis_contig11:3077287..3077390Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3077288..3077390 -
1690879715.4580169-UTR-C-linearis_contig11:3077287..30773901690879715.4580169-UTR-C-linearis_contig11:3077287..3077390Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3077288..3077390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.2491553-CDS-C-linearis_contig11:3074680..30749801622927463.2491553-CDS-C-linearis_contig11:3074680..3074980Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3074681..3074980 -
1690879715.420265-CDS-C-linearis_contig11:3074680..30749801690879715.420265-CDS-C-linearis_contig11:3074680..3074980Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3074681..3074980 -
1622927463.2639408-CDS-C-linearis_contig11:3075337..30754731622927463.2639408-CDS-C-linearis_contig11:3075337..3075473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3075338..3075473 -
1690879715.4306781-CDS-C-linearis_contig11:3075337..30754731690879715.4306781-CDS-C-linearis_contig11:3075337..3075473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3075338..3075473 -
1622927463.2763298-CDS-C-linearis_contig11:3075766..30758691622927463.2763298-CDS-C-linearis_contig11:3075766..3075869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3075767..3075869 -
1690879715.4396327-CDS-C-linearis_contig11:3075766..30758691690879715.4396327-CDS-C-linearis_contig11:3075766..3075869Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3075767..3075869 -
1622927463.2877994-CDS-C-linearis_contig11:3077133..30772871622927463.2877994-CDS-C-linearis_contig11:3077133..3077287Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3077134..3077287 -
1690879715.4491158-CDS-C-linearis_contig11:3077133..30772871690879715.4491158-CDS-C-linearis_contig11:3077133..3077287Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3077134..3077287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1354.1

>prot_C-linearis_contig11.1354.1 ID=prot_C-linearis_contig11.1354.1|Name=mRNA_C-linearis_contig11.1354.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=231bp
MALSIRQATVDDLIQMQTANLWCLPENYQMKYYLYHVLSWPQLLFVAEDH
KGKIVGYVLAKMEEDANVPPHGHITSLAVLRTHRKRGIATRLMRCSQLCM
QESFEARYVSLHVRESNRAAFHLYKTTLGYEINDIEKGYYADGEDAYDMR
LPFPQKEQSYGSMTPLKQVVTVKRKEEAPKASTAAAAAAAGDGAPAGTAA
AVAEGGAVGEVANKMDGLSVDSTSASAGKA*
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mRNA from alignment at C-linearis_contig11:3073349..3077390-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1354.1 ID=mRNA_C-linearis_contig11.1354.1|Name=mRNA_C-linearis_contig11.1354.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4042bp|location=Sequence derived from alignment at C-linearis_contig11:3073349..3077390- (Chordaria linearis ClinC8C monoicous)
GTCGGATTTTGCGGCCAGGCGACAGGCGACAGACGCCGCATAGCGAGAGC
TCCAGTGGGAATCGGCTGGTATTCTTCGTCGCTATCCCGTTGAGCGTAAG
ACCATGGCTCTCTCTATCCGGCAGGCAACCGTGGATGATCTTATCCAGAT
GCAGACGGCAAACTTGTGGTGCCTTCCGGAGAACTACCAGATGAAGTACT
ACCTCTATCATGTCCTCTCCTGGCCGCAGCTGCTGTTCGTCGCCGAGGAC
CACAAGGGTGAGTTGGAGCATCAATCGTCTACGCTAGTGGAGATTGGGCA
TCTTCTGCATCGCTTCTGCCGTAGGTGTTTGTGTATATGCTACCCTCACT
GCTTGACTTCGCAAAGCTTCTTATCAGTATCGATGAGAAGAGTGTCGAGG
GAACCCACAGACATTCCGCTTGTTCGCAGTGCGAATGCTCCTGTCTCTCT
CCACTACGCTGTGTTCGCACCCCCCCCGTATTAATGTATACCTTGCACTC
CCTGTTTTTCAAGTACTTGGTATCTCGATAATGTTGCAGGTTGCTGTTGC
TGTACATACATACATACGTGATCGTGGATGGCAGCTTCCCCCCTCCTGAG
AATTGACGCCCGCCCACAAGCGTGCCGAACACGGCTTGCAAGTAGCACCC
CCCAAATGGGAGGGCTGATGTCTGCGTTGGCGTTTGTGTTGTGCGTGAAA
GGCGATGATCCTCTTGAGCTCTCTCATGAAGGCTTGGCAGCAGTAGCCAC
GCACGAGCGGCCTGCTCTTTTTGTGTCCCCCCCCGATCAACGAGCGGCGC
GGCATGGTGGTACACACATCATGCATGCGGCACACACGTTCCTGCGGTGA
CTGCGCTCAGCCTGCACCTTTTCCCAACATCTTGGAGCCACAGCAGCTGT
CGACAACCTCGTCAACAACTAGGTCTAACTTTTGCAAGCTCGCGAACCAC
CACACGCCGCTGTTCTGAACCGCAGTGTCAGGCCGAGGTTAACTCTGTAG
AGTAAGCCACAGCCAGAAAGCTCGGAGCAGGCCCAGTCTGACTACAGCAG
TACCAGGTAGTAGTTTAGTTGGCATGGCCCTGTCGACTCGACCCGTCTAT
AATAGTGAGCCCATCTGCTTCCATGAAGTTGATGTCCACGAACTTCATAT
CCAAGTATTCGTCGCCTGTGTGAAAGTTCCTCCATATAATGCCACACCTT
TTCCCGTGGAGAAGAGCTCCATTTCTGTCCACCTCTCTGATTGTGGGCTC
GATCTGATTTTCTTATGTGAGGGGTGTAAACCAATCCATTATAATACTGA
CTCCTTTTGCACACCTCGCGTAGAGATGATGCGCTAAACCTAAACGCATT
GCACCCTAGCACGAGAGTTGAACGACGGAGTTGCTCAGTTGTTGTTGAAA
AAATTGAGTTATCTATCCCCCCCCTTGTCCCCTGTCGCCCCCCTCCTGCT
CGAACCGAACCGAACCGAACCGAAACGGAACGGAACCGAACCGAACGAAA
CGAAACCGGTCCGGCCCTCAGGCAAGATTGTGGGTTATGTACTGGCGAAG
ATGGAAGAGGACGCCAACGTGCCGCCGCACGGACACATCACTTCCCTCGC
GGTTCTGCGCACGCACCGGAAGAGGTGGGAAACTTGGCTTTCCGTGTGTA
CATATAAGCGCGCCATCAGGCTGTTGAGCGCTCACATAGTTTTGGCATGC
GGTCGCTTTTGTAAGAGCTCCAGTTTCCCACAACGCGAACGGGCGTTCTG
TTGTTGATATGGCTCTGCAGAGTTCAAGTTTTTTGAACCTATGATCATAG
CCGTCGTTGTCAGCTAGTCGCTCCCCGTCTCTGCTTGCGTGACGCCGTAG
CTGCACCCAGCTCTTAACCAACTCTCGCGCGATCCACAAACGGTCGTCGT
TGCCGCGCGGCGAGCAGGGGAATAGCGACGCGTTTGATGCGCTGCAGCCA
GCTGTGCATGCAGGAGTCGTTCGAAGCCCGATACGTTTCGCTGCACGTGC
GCGAGAGCAACAGGGCGGCGTTCCACCTCTACAAGACCACGCTAGGATAT
GAGGTACGCGTGGTGTTGGATCACCGCCGTTGAACACACGTTGACTCGGG
AGCATTGTCGGCATCGTCAACTGTTCGCCGCAGTCAATGCTTGCCTCATG
GTCCACGTCATCGCCTGTCATCGCCCGGTTAGACACATTCCGTGAAATCC
GAGCTGCGGAAGGCCATTCTTTGGTATCGCGACGTAGTCAATTCCCGTTC
AACGTACCTCCACATACGCGAACCTCCCTCCCACGGCGCGCCCTCGACAT
TTAGCTGTCTTCTTTTCTCGTCGCGTACGGCCTGCCCGCCCGCTACCTGC
CATCGTGGGGCGAAACGGTTGTCGAATCGCTCCATGAAACGAATGAAACA
TAAAAAAAAGATCAACGACATCGAGAAGGGCTACTACGCCGACGGAGAAG
ACGCGTACGACATGCGCCTCCCGTTCCCCCAGAAGGAGCAGTCCTACGGG
TCCATGACCCCGCTCAAGCAGGTTGTGACCGTGAAGCGAAAGGAGGAGGC
CCCCAAGGCGTCGACGGCAGCGGCAGCGGCAGCGGCAGGGGACGGGGCGC
CGGCGGGTACGGCCGCAGCGGTGGCGGAGGGGGGCGCGGTGGGAGAGGTT
GCGAATAAGATGGACGGGTTATCGGTGGATTCTACCTCTGCTTCTGCTGG
GAAGGCATAGCGCGCGGGGAGAGAGAATATAGTAGATATTTTTGGCCTCG
CTCGGTTTTTGTGTGTAATTTTTGTATGTTGCTAACGATGCGTTGGGTCT
TTCTGTATTTTGGTCTAGGTGCCCTTTGTAGGAATTTGGATCGGTCGGTT
GGGTACCTACATAATTTACGCTGAAAGGATAGGTCTGCAGAGGTTGGAGT
TCGTACCCGAGAGGGGTGTCGCGCCTGTATCCTTTGTGGCGGGGCTTGTC
TGCAGAGGTTTAGGTTTTGCGTGCGACGGTGCTTGCAGTATCGCCAAATT
AACGAGTTACGAATGAAGAGAACACAGAAACGCTCATTTTTTAGGCTCGC
TGCGTCTAGCATTAGGACGGCGCCCTGGTAGGGTGGAAGATCGAAGAGCG
CCTGAAGTGTATTTTCCACTGCTGTTGCTGCAAGCCCCGGGTGGTGGGCG
GGCTGCGACATTTCATGCAGCGCGGTGAAACAGCAGTCCGTGGCCAAGCG
GCGTGTGCTTGCGATGCTTCATTCATGCCTGGCAGTTTTTTTTTTTGTTG
GCCTGAAGCCCGCAGGGTTGTCGTGAACCGTCCAGCGCTGTTGCCGCATG
CTCAGCAAACACTGCTGCTACCGTTGGATGGGCATTTCCCACATGCACAC
ACCATGTGCTAGCTGCCCACGTTTTTTGCACATTTTTTGCAGATTTGTTT
CGTGAACGAAAAGTGGGAAAAAATGACAAGTGGCATTCGAGGAGAGACAA
GGATCGACACATATCGTCATTCCTCTATGGCCCGTGAGAAAATTGCGTTC
GCGTTCTTGATCAGTGAGAGATGAGCCGGCCTCCCGGCAAAGTTTGGGGA
AGTCGAGCTTTAGACGTGTGACAGGCAGTGTAACGGAAAAGAGAGGCGGG
GACAGAAGATTTCTTGATGTCTGTTGAAGCAAGGTCGGGGATCGGAAAAA
AAATAGCAATTATCGCGGGACTCAACAGCCGGGCGACCCACATGCTGTCA
CTCGGTTCGCGTCTGGTCTTGGTTGTCCAGGAGGTGTCGTAACGCGAACA
GAGAGAGCCGAGCGAGGAAAGGGGGGCATCCCTGCAGCGTGTAGTTCCTT
CACATGAGGTTCGTGGCTCTTCTATTGCTTTCCGCGGAGCTCACCTCATT
GCTACGGGAGAGAGAAGAGAGAGAGAGCGGGCAGGAGCACATCGCGTCAG
TTGACAAGCTCCCATACTTCCTGGAAAGATGGTCCTGCGTGCAAGTAGGC
AGCGGCTCCTTGCGCATCCACATCATGTGGTGATGTAGTATGCGTACCAC
GTCTATCCTGTTGGCTACGGCCCGCCGTGTCTCTCTGCAAAC
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Coding sequence (CDS) from alignment at C-linearis_contig11:3073349..3077390-

>mRNA_C-linearis_contig11.1354.1 ID=mRNA_C-linearis_contig11.1354.1|Name=mRNA_C-linearis_contig11.1354.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at C-linearis_contig11:3073349..3077390- (Chordaria linearis ClinC8C monoicous)
ATGGCTCTCTCTATCCGGCAGGCAACCGTGGATGATCTTATCCAGATGCA
GACGGCAAACTTGTGGTGCCTTCCGGAGAACTACCAGATGAAGTACTACC
TCTATCATGTCCTCTCCTGGCCGCAGCTGCTGTTCGTCGCCGAGGACCAC
AAGGATGGCTCTCTCTATCCGGCAGGCAACCGTGGATGATCTTATCCAGA
TGCAGACGGCAAACTTGTGGTGCCTTCCGGAGAACTACCAGATGAAGTAC
TACCTCTATCATGTCCTCTCCTGGCCGCAGCTGCTGTTCGTCGCCGAGGA
CCACAAGGGCAAGATTGTGGGTTATGTACTGGCGAAGATGGAAGAGGACG
CCAACGTGCCGCCGCACGGACACATCACTTCCCTCGCGGTTCTGCGCACG
CACCGGAAGAGGCAAGATTGTGGGTTATGTACTGGCGAAGATGGAAGAGG
ACGCCAACGTGCCGCCGCACGGACACATCACTTCCCTCGCGGTTCTGCGC
ACGCACCGGAAGAGGGGAATAGCGACGCGTTTGATGCGCTGCAGCCAGCT
GTGCATGCAGGAGTCGTTCGAAGCCCGATACGTTTCGCTGCACGTGCGCG
AGAGCAACAGGGCGGCGTTCCACCTCTACAAGACCACGCTAGGATATGAG
GGGAATAGCGACGCGTTTGATGCGCTGCAGCCAGCTGTGCATGCAGGAGT
CGTTCGAAGCCCGATACGTTTCGCTGCACGTGCGCGAGAGCAACAGGGCG
GCGTTCCACCTCTACAAGACCACGCTAGGATATGAGATCAACGACATCGA
GAAGGGCTACTACGCCGACGGAGAAGACGCGTACGACATGCGCCTCCCGT
TCCCCCAGAAGGAGCAGTCCTACGGGTCCATGACCCCGCTCAAGCAGGTT
GTGACCGTGAAGCGAAAGGAGGAGGCCCCCAAGGCGTCGACGGCAGCGGC
AGCGGCAGCGGCAGGGGACGGGGCGCCGGCGGGTACGGCCGCAGCGGTGG
CGGAGGGGGGCGCGGTGGGAGAGGTTGCGAATAAGATGGACGGGTTATCG
GTGGATTCTACCTCTGCTTCTGCTGGGAAGGCATAGATCAACGACATCGA
GAAGGGCTACTACGCCGACGGAGAAGACGCGTACGACATGCGCCTCCCGT
TCCCCCAGAAGGAGCAGTCCTACGGGTCCATGACCCCGCTCAAGCAGGTT
GTGACCGTGAAGCGAAAGGAGGAGGCCCCCAAGGCGTCGACGGCAGCGGC
AGCGGCAGCGGCAGGGGACGGGGCGCCGGCGGGTACGGCCGCAGCGGTGG
CGGAGGGGGGCGCGGTGGGAGAGGTTGCGAATAAGATGGACGGGTTATCG
GTGGATTCTACCTCTGCTTCTGCTGGGAAGGCATAG
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