mRNA_C-linearis_contig11.1351.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1351.1
Unique NamemRNA_C-linearis_contig11.1351.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.660e-39
Identity = 116/273 (42.49%), Postives = 139/273 (50.92%), Query Frame = 2 
Query:  608 LCGANPSVNDYYGGQFPSHLAAGRGQDEVVRNLLHSGAQVNHLTGDGWTLLYRAVCFGHLSTVKVLLDGGADVGTLSGSC-TPL-QVAAHKNNTDILAALVEAGADIHARTTKG-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRACHGKKMDAADLLLRWGADETTLDNKGK-IPSARIPNIAEAAEQDRPRLERLSKLLASAPQDRAWRRRGMLVMCRTHPDRLRLVVEIPDTA-EAIGQLQGHPSRRASRGEVKVEFTMYG 1411
            L GANPS   + G  FP H AA  G DEVV +L H G     +T    T L  AV   H++ +  LL  GADV  L+     PL  +AA  NN   + AL +AG  I  R+ KG +                                      AC     DAADLLLRWGADET +D+  K I S     I  AA   R RLER+S+LLA APQDRAWRRRG LV C +HPDR++L VEIP+ A EAI Q Q  P R A  G+V+V+  M G
Sbjct:   13 LSGANPSKAGFEG-WFPIHFAAHHGLDEVVVSLFHKGIDPTCVTTREETHLLLAVKRNHVAIINALLAEGADVNFLTTRRPVPLAHIAALHNNAAAMPALFKAGVYIEGRSPKGRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQLAVEIPEAATEAIEQTQERPRRHARTGQVEVKVEMDG 284
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 9.220e-35
Identity = 126/355 (35.49%), Postives = 157/355 (44.23%), Query Frame = 2 
Query:  452 TPLHLAVCGGYVAAARVLMMAWEDVNILDADGEGXXXXXXXXXXXXXXXXXXLCGANPSVNDYYGGQFPSHLAAGRGQDEVVRNLLHSGAQVNHLTGDGWTLLYRAVCFGHLSTVKVLLDGGADVGTLSGSCTPLQVAAHKNNTDILAALVEAGADIHARTTKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRACHGKKMDAADLLLRWGADETTLDNKGK-IPSARIPNIAEAAEQDRPRLERLSKLLASAPQDRAWRRRGMLVMCRTHPDRLRLVVEIPDTA-EAIGQLQGHPSRRASRGEVKVEFTMYGARGRGA--GWRGGARVVAGGLHARDRAVAGSMV 1504
            TPL L V GG  AAA+ L+MA  D ++ +                       L GANP +     G FP HLAA  G DEVV  ++  G  +N              C  +   + +LL               L++AA +N    +  L EAGADI AR T                                         AC     DAA LLL WG DE  +D++G+ +    +  IAEA    RP LERLS+LLA APQDRAWRRRG LV+ R HPDR+RL VEIP  A +A  Q Q  P RRAS G+V+V+ T  G    GA  G R G   V  G  A    V+  M+
Sbjct:   61 TPLDLTVTGGKEAAAKALIMAGADGHMWE---------------HRVAKDLLLSGANP-IQAGSNGNFPIHLAACHGLDEVVLAVVEKGIDLN--------------CLNNKREIPLLL-------------ALLRIAACENKAAAIRVLFEAGADIEARLT--------------------LFQLGAKVNSKENERITSLSSACSFGNHDAAGLLLSWGGDENAMDSEGETVVFMVMQQIAEAPASVRPPLERLSRLLARAPQDRAWRRRGFLVLGRVHPDRVRLAVEIPPAAADATEQPQQRPRRRASTGQVEVDGTNGGGGXTGASSGVRAGIEAVHEGTVAGFGGVSAWMM 352
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: A0A6H5KB54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB54_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.380e-32
Identity = 171/332 (51.51%), Postives = 192/332 (57.83%), Query Frame = 2 
Query:  452 TPLHLAVCGGYVAAARVLMMAWEDVNILDADGEGXXXXXXXXXXXXXXXXXXLCGANPSVNDYYGGQFPSHLAAGRGQDEVVRNLLHSGAQVNHLTGDGWTLLYRAVCFGHLSTVKVLLDGGADVGT----LSGSCTPLQVAAHKNNTDILAALVEAGADIHARTTKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRACHGKKMDAADLLLRWGADETTLDNKGKIPSARIPNIAEAAEQDRPRLERLSKLLASAPQDRAWRRRGMLVMCRTHPDRLRLVVEIPDTA-EAIG---QLQGHPSRRASRGEV-KVEFTMYGARG 1420
            TPLHLAV GG  A A+ L MA  DVN+LDA   GXXXXXXXXXXXXXXXXXX                          D++V  L H G     L G     L RAV   H+STV+VLL  GA+            T L  AA  +N   +  L+EAGA + +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     ET +D +G  PS  IP IAEAA++D  RLERLSKLL  APQDRAWRRRG L +CR HPDRLRLVVEIP TA EA G   Q Q  PSRRA +G+  KV+  +  A G
Sbjct:   84 TPLHLAVLGGNAATAKALTMAEADVNVLDAMNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XDDIVVALAHKGVD---LEGVAEPPLLRAVRQDHISTVRVLLAVGANANNPFSDYDYGTTVLHFAAETDNAVAIPVLIEAGASVQSSDMYDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETAVDLQGSTPSEFIPAIAEAADEDHRRLERLSKLLTRAPQDRAWRRRGFLALCRAHPDRLRLVVEIPKTADEASGKQPQEQERPSRRARKGQQSKVDVEVDDAHG 411
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: A0A6H5L7V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.280e-31
Identity = 72/119 (60.50%), Postives = 85/119 (71.43%), Query Frame = 2 
Query: 1055 HRACHGKKMDAADLLLRWGADETTLDNKGKIP-SARIPNIAEAAEQD---RPRLERLSKLLASAPQDRAWRRRGMLVMCRTHPDRLRLVVEIPDTAE-AIGQLQGHPSRRASRGEVKVE 1396
            H AC+  + +A DLLLRWGADET +D++G  P S   P  A+ AE D   R   +RLSKLL  APQDR+WRRRG LVMCRTH DRLRLVV++PDTA  AI Q    PSR+A RG+VKVE
Sbjct:   23 HMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYHFPAGADEAEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRTHQDRLRLVVDVPDTAATAIRQTSEPPSRQARRGQVKVE 141
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.980e-29
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:  145 EDRASILQGAA-MIFSMVCDRATPEQWAEWLRVPLEHAAPTANVDLVDKLLKAGADGSAGWKGRNGRTL-HAAAVGGNERVMTALMRAGAKEDMNTK 429
            EDRA  L  AA +IF ++CDRAT EQWAEWLR PLEHAA TAN DLV+KLLKAGADGSAGW+G + +TL HAAA GGNE V+TAL+RAGA EDM  K
Sbjct:    9 EDRAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEVVTALVRAGAGEDMEAK 105
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 7.110e-27
Identity = 69/104 (66.35%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:  142 YEDRASILQGAA-MIFSMVCDRATPEQWAEWLRVPLEHAAPTANVDLVDKLLKAGADGSAGWKGRNGRTL-HAAAVGGNERVMTALMRAGAKEDMNTKD-QTNH 444
            YE+RASILQ     IF +VCDRATPEQWAEWLR PLEHAA T N DLVDKLL AGA+  AGW+G +G+TL HAAA GGN  V+T+L RAGA  DM  K   T H
Sbjct:    4 YEERASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTLLHAAAEGGNVHVITSLRRAGAGRDMKAKSLDTGH 107
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 7.690e-27
Identity = 65/99 (65.66%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  136 TKYEDRASILQGAA-MIFSMVCDRATPEQWAEWLRVPLEHAAPTANVDLVDKLLKAGADGSAGWKGRNGRTL-HAAAVGGNERVMTALMRAGAKEDMNT 426
            ++YEDRA+IL+G+    F +VCDRATPEQWAEWLR PLEHAA TA+ DLV KLL AGA+GS GW G +G+TL HAAA GGN +V+ AL+RAGA  D +T
Sbjct:    5 SRYEDRANILRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDT 103
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.790e-26
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:  142 YEDRASILQGAA-MIFSMVCDRATPEQWAEWLRVPLEHAAPTANVDLVDKLLKAGADGSAGWKGRNGRTL-HAAAVGGNERVMTALMRAGAKEDMNTK 429
            YE+R+SILQ      F +V DRATP+QWAEWLR PLEHAA T N DLVDKLL AGA+G AGW+G +G+TL HAAA GGN +V+T L  AGA EDM  K
Sbjct:   46 YEERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAK 143
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BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: D7FQP2_ECTSI (Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.140e-25
Identity = 65/97 (67.01%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:  145 EDRASILQGAA-MIFSMVCDRATPEQWAEWLRVPLEHAAPTANVDLVDKLLKAGADGSAGWKGRNGRTL-HAAAVGGNERVMTALMRAGAKEDMNTK 429
            EDR  IL  AA MIF ++CDRAT EQW EWLR PLEHAA TAN DLV+KLLKAGADGSAGW+G +  TL HAA       V+TAL+RAGA EDM  K
Sbjct:    9 EDRVKILGDAADMIFKLMCDRATSEQWTEWLRAPLEHAAGTANRDLVEKLLKAGADGSAGWRGCDDNTLLHAAXXXXXXXVVTALIRAGAGEDMEAK 105
[Close]
BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Match: A0A6H5KNA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA2_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.400e-25
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 2 
Query: 1055 HRACHGKKMDAADLLLRWGADETTLDNKGKIPSARIPNIAEAAEQDRPRLERLSKLLASAPQDRAWRRRGMLVMCRTHPDRLRLVVEIPD-TAEAIGQLQGHPSRRASRGEVKVE 1396
            H ACH    DAADLLL WGADET  D      SA IP I E  E++RP + RL+KLL  A +DR WRRRG+LVMCR HPDRL L  ++ + TAE++G+L+   + R  R E +VE
Sbjct:   24 HTACHVVNPDAADLLLTWGADETAADWNDAAVSAVIPRIDEPPEENRPAILRLAKLLEFADKDRTWRRRGLLVMCRAHPDRLLLAADVSNNTAESVGELREGRNCRTKREEERVE 138
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFY7_9PHAE1.660e-3942.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU78_9PHAE9.220e-3535.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB54_9PHAE6.380e-3251.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7V4_9PHAE4.280e-3160.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQP1_ECTSI1.980e-2972.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2A3_ECTSI7.110e-2766.35Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FPN3_ECTSI7.690e-2765.66Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]
D8LHQ7_ECTSI4.790e-2665.31F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
D7FQP2_ECTSI1.140e-2567.01Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KNA2_9PHAE1.400e-2553.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3024857..3029062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue9.7e-27
Seed eggNOG ortholog2880.D7FQP1
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size2354
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1351.1prot_C-linearis_contig11.1351.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3026017..3026388 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.6338315-UTR-C-linearis_contig11:3024856..30249561622927462.6338315-UTR-C-linearis_contig11:3024856..3024956Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3024857..3024956 +
1690879714.9422698-UTR-C-linearis_contig11:3024856..30249561690879714.9422698-UTR-C-linearis_contig11:3024856..3024956Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3024857..3024956 +
1622927462.6488798-UTR-C-linearis_contig11:3025939..30260161622927462.6488798-UTR-C-linearis_contig11:3025939..3026016Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3025940..3026016 +
1690879714.9570746-UTR-C-linearis_contig11:3025939..30260161690879714.9570746-UTR-C-linearis_contig11:3025939..3026016Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3025940..3026016 +
1622927462.6806355-UTR-C-linearis_contig11:3026388..30274191622927462.6806355-UTR-C-linearis_contig11:3026388..3027419Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3026389..3027419 +
1690879714.9750116-UTR-C-linearis_contig11:3026388..30274191690879714.9750116-UTR-C-linearis_contig11:3026388..3027419Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3026389..3027419 +
1622927462.7096355-UTR-C-linearis_contig11:3028288..30290621622927462.7096355-UTR-C-linearis_contig11:3028288..3029062Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3028289..3029062 +
1690879714.9837854-UTR-C-linearis_contig11:3028288..30290621690879714.9837854-UTR-C-linearis_contig11:3028288..3029062Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3028289..3029062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.6639109-CDS-C-linearis_contig11:3026016..30263881622927462.6639109-CDS-C-linearis_contig11:3026016..3026388Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3026017..3026388 +
1690879714.9669309-CDS-C-linearis_contig11:3026016..30263881690879714.9669309-CDS-C-linearis_contig11:3026016..3026388Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3026017..3026388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1351.1

>prot_C-linearis_contig11.1351.1 ID=prot_C-linearis_contig11.1351.1|Name=mRNA_C-linearis_contig11.1351.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp
MIFSMVCDRATPEQWAEWLRVPLEHAAPTANVDLVDKLLKAGADGSAGWK
GRNGRTLHAAAVGGNERVMTALMRAGAKEDMNTKDQTNHEAYTTPSCRMR
WVCGCCEGIDDGLGGREHSRRRR*
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mRNA from alignment at C-linearis_contig11:3024857..3029062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1351.1 ID=mRNA_C-linearis_contig11.1351.1|Name=mRNA_C-linearis_contig11.1351.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4206bp|location=Sequence derived from alignment at C-linearis_contig11:3024857..3029062+ (Chordaria linearis ClinC8C monoicous)
CGCACTATCGTCGGAAGCGGTTGTTGTATTGCTCTCGCCATCGCACAGGC
TCGAGGCTAGAGAAGTGAGAGGTGGCCATGAAGAATATGTGCGTCAGAAG
GTGGGATTGCTGTAAATTATCTTGGTCTACTGGTCTACGCTCAATTTCTG
CACCAGCAGGCCTCCAGGTTGTTTGCCATGACGAGCCGGTGTTGTGTGTG
GGCATCGTTCTCTCTATATGTGGACGGATAGGGACCTAGAACACGGCTGC
GAGATATCCACGATCCAAAGCCATTGTTAACAAAATAGTTCATCTGCAGC
AGTAGTACAACGGCGGGAGAGTCTGCTCTGTCTCGTCGCATACCCACCAG
GCCGGTTAAACATGCACGCACCAACCAACCGCCGCCGTTCCCCGAACAAC
CGCTGCTGCCTTTCCTTCAAGTGAGGGTGTGCGCTACTCCGTGTCCGGCT
GCTGTCACATTGATGATGATTCGCAGTTCCAAGTCACGCTTGTCACCCCG
TAAAGTGGATGTCCCGTTTGATTTCCCAAAATACAATAGTCTAATTACAT
AAATTACATAATTTACCCTTTCTGTCCACCACCTAGTCTACACAGCAAGT
CTCCTCGGGAGGCAGAGACATATTTTGACCAGAAGTGTGCATCTGCGCTT
TTTCAGTTTGCCAACTATTTCATACCTGGTACTTCTTATGTATGTAAATT
TACCCCCTCCTTGCGTCTGCACGCCGTAGGCTCTACTCTCCTCACAAGTA
CCACCGTTGCCGTCAGTATACGAATCGCTTCAGCAGTACGTATAACCAAC
AGAGTTGAGCTAAACACCATCAAGTAAACGACTGCACCGAGAGCGACAGC
CCTCCCCACATGGAGGAAACCCTCCCTACGCCGTAGGATGAGACACACAG
GAGGAAACTTCGCGGCCGAGACATGCCTCCAACAAAGAGGCCGTGCTCGC
TCCCGTGTTCCCCTTGCCCCCTTCCACCATCGCTACCGAATACCCACGCA
CCATGTGCAGAACGTGATATTCTCCCTCCCCATCTCTCTTTGTTTTATTT
TATTTTATCCTTCTCCACGCCCTTCCTATGCAGCTATTCTGGAGACCGCT
GCTCAACAATGCCAGCATACGAAGTATGAAGATCGTGCCAGCATCCTGCA
GGGAGCAGCCATGATATTCAGCATGGTCTGCGATAGGGCGACACCCGAGC
AGTGGGCGGAGTGGCTTCGGGTCCCGCTCGAGCACGCGGCACCCACGGCA
AATGTCGATCTGGTGGACAAGCTGCTGAAGGCCGGGGCGGATGGGAGTGC
GGGGTGGAAGGGGCGCAATGGCCGGACTCTACACGCCGCCGCTGTGGGAG
GAAACGAGCGAGTGATGACGGCCTTGATGAGGGCAGGAGCCAAGGAAGAC
ATGAACACGAAAGACCAAACAAACCATGAGGCGTACACCACTCCATCTTG
CCGTATGCGGTGGGTATGTGGCTGCTGCGAGGGTATTGATGATGGCTTGG
GAGGACGTGAACATTCTCGACGCAGACGGTGAGGGTCCGCTTCACCCCGC
CATCAGAGGGGGCTACGCAGGAGTTGCTGAGTACTTGTTGCTTTGTGGAG
CCAATCCCAGCGTGAACGACTACTACGGCGGTCAGTTCCCCAGTCACCTC
GCTGCCGGCCGTGGCCAAGATGAAGTCGTACGCAATTTGCTTCACAGCGG
GGCACAGGTGAACCACTTGACTGGCGATGGGTGGACTCTTCTGTACCGTG
CGGTATGCTTCGGTCACCTCTCGACCGTGAAGGTTCTATTGGATGGAGGG
GCCGATGTGGGCACTCTCTCCGGTAGTTGCACCCCGCTGCAAGTAGCCGC
ACACAAGAACAACACAGACATCCTAGCAGCGCTCGTGGAGGCTGGGGCCG
ACATCCACGCAAGGACCACAAAGGGGTCTACACCACTCCGCTTTTCGGCT
TTTCGCGGATCGTGCGCACCCATGCTTGCTCTCTTGCAACTGGGAGCGGA
CGTGCATGCCAAGACCACACGCGGATGTACCGCCTTGCACCGTGCTTGCC
ACGGAAAAAAGATGGACGCCGCCGACCTTCTGTTGAGGTGGGGGGCGGAT
GAGACCACCCTTGACAACAAAGGGAAGATACCCAGCGCCAGGATACCGAA
CATCGCCGAAGCTGCCGAGCAGGATCGTCCAAGACTCGAACGTCTGTCCA
AGCTGCTGGCGTCTGCTCCGCAGGACAGGGCCTGGCGTCGCCGCGGCATG
CTGGTCATGTGCCGCACCCACCCAGACAGGCTACGGCTGGTGGTAGAGAT
TCCCGACACCGCTGAGGCTATCGGGCAGCTGCAAGGGCATCCGAGTCGTC
GTGCTAGTAGGGGGGAGGTGAAGGTCGAGTTCACGATGTACGGCGCACGA
GGTAGGGGGGCAGGGTGGCGGGGAGGAGCGCGAGTGGTGGCAGGAGGGCT
GCACGCGAGGGATCGAGCGGTGGCGGGTTCGATGGTGTGGTAGTCTGGCT
CGTGGCGCTGAGGGATGAGGACGTGTTCCGCAACATCGTGGGATCCCTGT
AGTAGGAGTCAAGGTGAGAGTAGCAAGTTTTTCTGCTAAATATTGTGCTT
TAGGTGTGAACGCGGAGAGAGCCCTCTTGCGTCTTCGTAGTATTCGCTGG
CGTGTGCATCTTGAGTCTTCACAATTTGAACAATTGGTCTTTTCGCTGGA
ATGTGACGGCGCCGTACTCCATCTTTCCCGGAATCTGAGCATGCTGGCAG
CAGTTCCGCTAACAGTGTGCTCTGATAACAGCAGCATGTACATGAAGCAA
GCGCGGGCGCGAAGCTTCCAAATCTTGTACATCTTGAGATTCCTATATTT
CCCCCCCGTCATTTTCCGTGTGAAGAGCATCATGGCATGTGTTTGTAAGC
ATAGTACTTACGCAGCCGGTCGCCCCGGTGGACTAGTGGTTTAACCTCGA
ACCCACTATCCGCAAAGTCTGGAGTTCAATTCCAAGCGAAGGTGATTATT
TTGCGACTTTGCCGGTGAAAGCGATAACACAGCTGAAAAAGCTCGTGATT
ACCAAATTTCGACTTAGCACGTTGACGAGGGAAAGGGATGGCTGCACCTT
TCTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAA
AAGAAACAGAAAAAGGAAAAAGAAGAAAAAAGCCCCACCCAGTGTTTACG
CCCTCCTGTGTGACCCCGGTTGGTTCTTGTTGTACAGAAAAATACACTGC
TGAACAAGTGTAGTACTCTAACTACACCGCAACGTGTAGTACACGTCTCG
CCTTGATCGGAAACTGTCGACAAAATAAATGGGACGAAAACACACGACAC
ACACTTATGTCCCCAAGCTGACGATTGGCATATGTTCCCCGCCTTGCTGC
TTTGTCCGCTGCTCCTTCCTCTCGATGGTGAGACCAAAGCCTGCGAGTGG
TATGCTGGTGGTCCCCTGTCTTTTTTTCCGCTGGGGTGACTGAAGCAGGG
TTTGCTGCTGAAGGGCTGGAGCCGGATGGTCGTCTTCTGTAGAGCAGTAT
GTAGTAGAAAACTTCGAAAGATCTTCAGTTGCAGTAAACTGAGTAATTTA
GACCCCTGTTTTTCTCTTGCTCTCAGTCGGAAAACTGTGAACTTCGATTG
ATGAACAATCGTTTCAAATTTCAACCTCTGCGTTTTTCAGATTCCACAAG
ACAGGCGTCCTGCGCTTTCAGGATCGGAGGCCGGAAATTGCGGGTGTCCC
TATTTTCAAGTTTCAAATGAGTTGCTTCTTCCAGCCGAGGTCCACCCTTT
GTTGGCTCTTTGTTGGCAGAAAAGAAAAAAACAGGTTTGTGTCGATTCAG
CGATGCTCCCCTGGTTGTAGTGGCCAACCCGCACTTCGAATGGATTCAGT
TTTCTGAATTGCATTCGTTACTTCGAGTATCTAATGTAGAACAAGGCAGC
AGGGGATATACAAGTGAGTGTAGAGGATATCTTCTATGGCAAAGGTCTGG
AGGCTTTCATTAATCAAAATTGGTGACCATGCTGGTTGAAAAATTGAGGC
CCATTCAAAAGCGATGGAGAGACGAGAGAGATGGGTGACCTGGGAGTCGA
CGAGAGAGATGGGTGGCCTGCTCTTGTTCCGATGAGAGCAGTTTTTTAAG
TTCCGCTGCAATTTTTTTCGCGTGTTTGGTTGCGAAGGTGATGGCAGACG
CGACAG
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Coding sequence (CDS) from alignment at C-linearis_contig11:3024857..3029062+

>mRNA_C-linearis_contig11.1351.1 ID=mRNA_C-linearis_contig11.1351.1|Name=mRNA_C-linearis_contig11.1351.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig11:3024857..3029062+ (Chordaria linearis ClinC8C monoicous)
ATGATATTCAGCATGGTCTGCGATAGGGCGACACCCGAGCAGTGGGCGGA
GTGGCTTCGGGTCCCGCTCGAGCACGCGGCACCCACGGCAAATGTCGATC
TGGTGGACAAGCTGCTGAAGGCCGGGGCGGATGGGAGTGCGGGGTGGAAG
GGGCGCAATGGCCGGACTCTACACGCCGCCGCTGTGGGAGGAAACGAGCG
AGTGATGACGGCCTTGATGAGGGCAGGAGCCAAGGAAGACATGAACACGA
AAGACCAAACAAACCATGAGGCGTACACCACTCCATCTTGCCGTATGCGG
TGGGTATGTGGCTGCTGCGAGGGTATTGATGATGGCTTGGGAGGACGTGA
ACATTCTCGACGCAGACGGTGAATGATATTCAGCATGGTCTGCGATAGGG
CGACACCCGAGCAGTGGGCGGAGTGGCTTCGGGTCCCGCTCGAGCACGCG
GCACCCACGGCAAATGTCGATCTGGTGGACAAGCTGCTGAAGGCCGGGGC
GGATGGGAGTGCGGGGTGGAAGGGGCGCAATGGCCGGACTCTACACGCCG
CCGCTGTGGGAGGAAACGAGCGAGTGATGACGGCCTTGATGAGGGCAGGA
GCCAAGGAAGACATGAACACGAAAGACCAAACAAACCATGAGGCGTACAC
CACTCCATCTTGCCGTATGCGGTGGGTATGTGGCTGCTGCGAGGGTATTG
ATGATGGCTTGGGAGGACGTGAACATTCTCGACGCAGACGGTGA
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