mRNA_C-linearis_contig11.1344.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1344.1
Unique NamemRNA_C-linearis_contig11.1344.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: D7FXX4_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXX4_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 1.480e-125
Identity = 194/245 (79.18%), Postives = 213/245 (86.94%), Query Frame = 2 
Query:  425 PSKSLPNIYLIPGASRPFGHLAVPFLFCGGGQAMCQLDATSSTKLFFSWPLICKGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCGQIP-MERQGVPAVVAAP--GE-HPHND 1147
            P+  L   Y IP  +R +  L   F+      AMCQLDATSSTKLFFSWPLICKGQVWRLVTNF +FGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCA+LMIGAAP+LAM+FLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYL WV L+LSAVLGSPL++DLLGIAVGHLFYFLEFVYPEVA +RGWK+KQL+RAPRIVQQLCGQ+P ++RQ VPAVV  P  G+ H H+D
Sbjct:    5 PADPLSWYYDIPVVTRVY--LTAAFVT----TAMCQLDATSSTKLFFSWPLICKGQVWRLVTNFFFFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCASLMIGAAPYLAMNFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLPWVLLLLSAVLGSPLKSDLLGIAVGHLFYFLEFVYPEVANIRGWKWKQLMRAPRIVQQLCGQVPAVDRQDVPAVVPVPDVGQGHLHDD 243
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: A0A7S2FTR3_9STRA (Derlin (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FTR3_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.700e-74
Identity = 115/187 (61.50%), Postives = 144/187 (77.01%), Query Frame = 2 
Query:  527 CQLDATSSTKLFFSWPLIC-KGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEG-DFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCGQ 1081
            C LD  S   L+F++ LI  KGQ WR++TNFL+FG   + FLFHMYFLVRY RLLEEG DFR RTGDFVW + F A LM   APF+++ FLG  L FMMVYVWGRRNEHVRM+ LG+FPFTAPYL WV L  S +LG+P   DL+GI VGH++YFLE+VYP++A +RGW++++L+  P +V+ LCGQ
Sbjct:    2 CALDVISPFSLYFNFGLIVYKGQFWRIITNFLFFGLFSLDFLFHMYFLVRYCRLLEEGTDFRSRTGDFVWMICFGATLMTMTAPFVSVHFLGSSLTFMMVYVWGRRNEHVRMSFLGLFPFTAPYLPWVLLTFSVLLGNPATIDLIGICVGHIYYFLEYVYPQIADLRGWRWRKLLVTPAVVRHLCGQ 188
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: A0A835Z6W2_9STRA (Derlin n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6W2_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.440e-71
Identity = 118/229 (51.53%), Postives = 157/229 (68.56%), Query Frame = 2 
Query:  449 YLIPGASRPFGHLAVPFLFCGGGQAMCQLDATSSTKLFFSWPLICKGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSP--LETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCGQIPMERQGVPAVVAAPG 1129
            Y IP  SR +  +   F+      A+  LD  S  + F +W L+ +GQ WRL+T FL+FG L + FLFHMYFL RY RLLEEG+F  +T DFV+FLLF A LM+ A P +++ FLG  L+FMMVYVWGRRNEHVRM+L G+ PFTAPYL WV L +S ++ +   L TDLLGI VGH++YFL F+YPEVA +RGW+ ++++  PR++Q LCG+  +     P +V   G
Sbjct:   13 YEIPPVSRTY--MTAAFVT----TALTALDLVSPIQFFLNWKLVMQGQAWRLLTTFLFFGTLSLDFLFHMYFLARYCRLLEEGEFHRKTSDFVFFLLFGAVLMLAAQPLVSLPFLGSSLSFMMVYVWGRRNEHVRMSLFGLLPFTAPYLPWVLLAVSVLVNNSGALSTDLLGIGVGHMYYFLAFIYPEVAAIRGWRLRRVIHTPRLLQVLCGERALAHAEQPRIVEPAG 235
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: A0A7S2Y1F4_9STRA (Derlin n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F4_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.370e-70
Identity = 113/187 (60.43%), Postives = 140/187 (74.87%), Query Frame = 2 
Query:  521 AMCQLDATSSTKLFFSWPLIC-KGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCG 1078
            A C LD  S   L+F+  LI  KGQ+WR++TNF +FG   + FLFHMYFLVRY RLLEEG+FRGRT DFVWFLL    LM  AAPF+++ FLG  L FMMVYVWGR N+HVRM+ LG+FPFTAPYL WV L+ S +LG     D++GI VGHL+YF EFV+PEVAR+R W+ K+++ AP  + +LCG
Sbjct:   29 AACALDIVSPYSLYFNVTLIFGKGQIWRILTNFFFFGLFSLDFLFHMYFLVRYCRLLEEGEFRGRTADFVWFLLVGGTLMTMAAPFVSVLFLGSSLTFMMVYVWGRLNQHVRMSFLGLFPFTAPYLPWVLLLFSVLLGHSPAVDVIGIVVGHLYYFFEFVFPEVARIRRWRVKRVLAAPSFLHRLCG 215
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: F0VYR4_9STRA (Derlin n=3 Tax=Albugo TaxID=65356 RepID=F0VYR4_9STRA)

HSP 1 Score: 237 bits (605), Expect = 4.100e-69
Identity = 118/212 (55.66%), Postives = 148/212 (69.81%), Query Frame = 2 
Query:  521 AMCQLDATSSTKLFFSWPLIC-KGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCGQ--IPMERQGVPAVVAAPGEHPHND 1147
            A C LD  S   L++++ LI  KGQVWRLV+NFL+FG   + FLFHMYF+VRY RLLEEG FR R  D+V+ LLF AALMI  APF+++ FLG  L FMMVY+WGRRN  VRM+ LG+FPFTAPYL WV L  S  LG+   TDL+GI VGH +YFLE +YP +A +RGWK K+ +  PRI++ LC    +  +   VP V+   G H HN+
Sbjct:   85 ASCALDLISPFSLYYNFNLIFYKGQVWRLVSNFLFFGLFSLDFLFHMYFVVRYCRLLEEGSFRNRPADYVYMLLFGAALMILVAPFVSVHFLGSSLTFMMVYIWGRRNSDVRMSFLGLFPFTAPYLPWVLLSFSIALGNSATTDLIGIFVGHTYYFLEDIYPSIAAIRGWKIKRPLTTPRILKYLCDPQAVTPQYNAVPNVIGLGGNHLHNE 296
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: T0PTH3_SAPDV (Derlin n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0PTH3_SAPDV)

HSP 1 Score: 232 bits (592), Expect = 5.810e-68
Identity = 108/186 (58.06%), Postives = 141/186 (75.81%), Query Frame = 2 
Query:  521 AMCQLDATSSTKLFFSWPLIC-KGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLC 1075
            A C L+  S   L+F++ LI  +GQVWRL+TNFL+FG   + FLFHMYFLVRYSR+LEEG FRGRT DF++ +LF AA MI  APF+++ FLG  L FMMVY+WGRRNEH R++ LG+FPFTAPYL WV L+ S VLG+    DL+GI VGH++YF E VYP +A +RGW+ +++++ P  V+ LC
Sbjct:   27 AACALELISPFSLYFNFNLIFYRGQVWRLLTNFLFFGLFSLDFLFHMYFLVRYSRMLEEGSFRGRTADFLYMILFGAAFMILVAPFVSVHFLGSSLTFMMVYIWGRRNEHTRLSFLGLFPFTAPYLPWVLLLFSMVLGNSATIDLIGIVVGHIYYFFEDVYPTIADIRGWRVRRVLKTPAFVKFLC 212
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: A0A0P0YV63_9STRA (Derlin n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV63_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.890e-67
Identity = 99/189 (52.38%), Postives = 139/189 (73.54%), Query Frame = 2 
Query:  521 AMCQLDATSSTKLFFSWPLICKGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCGQIP 1087
            A C ++ T+   L+FSW L+ KGQVWRL+T++L+FGA  + F+FHMYFL+RYSR LEEG+FRG+T  ++W L+F    + G A +  + FLG  L FMM+YVWGRRNE V+M+  G   F APYL WV L  S ++G+P+ TDL+GI VGH++YFL+FVYP VA +RGWK ++++  P ++Q +CG +P
Sbjct:   43 AACAVEFTTPYSLYFSWDLVFKGQVWRLITSYLFFGAFSIDFMFHMYFLIRYSRFLEEGEFRGQTAKYLWMLMFGICCISGIAVYTNIPFLGNALTFMMLYVWGRRNESVKMSFFGFLQFNAPYLPWVMLGFSVLMGNPISTDLIGIVVGHVYYFLDFVYPVVADIRGWKMRKIMEPPTVLQWMCGDMP 231
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: A0A7R9UC87_9STRA (Derlin n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC87_9STRA)

HSP 1 Score: 231 bits (588), Expect = 2.150e-67
Identity = 106/183 (57.92%), Postives = 138/183 (75.41%), Query Frame = 2 
Query:  527 CQLDATSSTKLFFSWPLICKGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLC 1075
            C +D  S   L+++W LI +GQ+WRL TNFL+FG   + FLFHMYFLVRYSRLLEE +FRGRT DF + LLF A+LM+  APF+ + FLG  L+FMMVYVW RRNEHVRM+  G+ PF APYL WV L  S +LG     DL+GIAVGH++YFLEFV+P VA +RGW+ +++++ P ++Q +C
Sbjct:   54 CAVDLISPFALYYNWSLISEGQLWRLFTNFLFFGTFGLDFLFHMYFLVRYSRLLEENEFRGRTADFAFMLLFGASLMLCVAPFVHIHFLGSSLSFMMVYVWARRNEHVRMSFFGVVPFNAPYLPWVLLGFSTLLGHSPTIDLIGIAVGHIYYFLEFVFPAVASIRGWQTRKVLQTPAVLQYVC 236
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: A0A225VPV8_9STRA (Derlin n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A225VPV8_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.650e-67
Identity = 116/207 (56.04%), Postives = 143/207 (69.08%), Query Frame = 2 
Query:  527 CQLDATSSTKLFFSWPLIC-KGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCGQIPMERQG-VPAVVAAPGEHPH 1141
            C LD  S   L+F++ LI  KGQVWRL TNF++FG   + FLFHMYF+VRY RLLEEG FRGRT DFV+ LL  A  MI  APF+ + FLG  L FMMVY+WGRRNEHVRM+ LG+FPFTAPYL WV    S +LG+   TDL+GI VGH++YFLE VYP +A +RGWK ++ +  PRI++ +    P    G V    A   +HPH
Sbjct:   29 CALDLVSPFSLYFNFNLIFFKGQVWRLATNFMFFGLFSLDFLFHMYFVVRYCRLLEEGSFRGRTADFVYMLLLGAVFMIVLAPFVNIHFLGSSLTFMMVYLWGRRNEHVRMSFLGLFPFTAPYLPWVLFSFSILLGNSATTDLIGIIVGHIYYFLEDVYPTIASIRGWKTQRPLETPRIIRYMFDPRPAVADGEVINDFADVNDHPH 235
[Close]
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Match: A0A7S2EGE3_TRICV (Derlin n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S2EGE3_TRICV)

HSP 1 Score: 226 bits (577), Expect = 6.240e-66
Identity = 106/187 (56.68%), Postives = 136/187 (72.73%), Query Frame = 2 
Query:  521 AMCQLDATSSTKLFFSWPLI-CKGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFVWFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFPFTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGWKYKQLVRAPRIVQQLCG 1078
            A C LD  S   L+F+W LI  +GQ+WRL T +L+FG   + FLFHMYFLVRY RLLEEGDFRGRT +FV  LLF   +M   APF+++ FLG  L FMM YVWGRRNE VRM+ LG+F F APYL WV L  S +LG+P+  D++GI VGH +YFLE+VYP +A +RGWK ++++  PR++  +CG
Sbjct:   40 AGCALDIISPFSLYFNWDLIFSQGQIWRLFTTYLFFGMFSIDFLFHMYFLVRYCRLLEEGDFRGRTANFVLLLLFGITMMTLVAPFVSVHFLGSSLTFMMTYVWGRRNEDVRMSFLGVFSFKAPYLPWVMLGFSVLLGNPVTIDVVGILVGHTYYFLEYVYPVIAEIRGWKVRRIMEPPRLLHWICG 226
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXX4_ECTSI1.480e-12579.18Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXX4_... [more]
A0A7S2FTR3_9STRA2.700e-7461.50Derlin (Fragment) n=1 Tax=Florenciella parvula Tax... [more]
A0A835Z6W2_9STRA1.440e-7151.53Derlin n=2 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2Y1F4_9STRA2.370e-7060.43Derlin n=2 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
F0VYR4_9STRA4.100e-6955.66Derlin n=3 Tax=Albugo TaxID=65356 RepID=F0VYR4_9ST... [more]
T0PTH3_SAPDV5.810e-6858.06Derlin n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0... [more]
A0A0P0YV63_9STRA1.890e-6752.38Derlin n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690... [more]
A0A7R9UC87_9STRA2.150e-6757.92Derlin n=1 Tax=Pinguiococcus pyrenoidosus TaxID=17... [more]
A0A225VPV8_9STRA2.650e-6756.04Derlin n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0... [more]
A0A7S2EGE3_TRICV6.240e-6656.68Derlin n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2942725..2946527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score381.7
Seed ortholog evalue3e-103
Seed eggNOG ortholog2880.D7FXX4
Preferred nameDERL2
KEGG rclassRC00003,RC02120,RC03389,RC03391
KEGG koko:K13989,ko:K19737
KEGG ReactionR11216,R11218,R11220
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006986,GO:0007154,GO:0007165,GO:0007610,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010605,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0030176,GO:0030307,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032527,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033554,GO:0034613,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0040008,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042742,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045861,GO:0045927,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051246,GO:0051248,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051705,GO:0051707,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070085,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070887,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0097708,GO:0098542,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903513,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904380,GO:1904950,GO:1905897
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
EC2.1.1.320
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Exons5
Model size2110
Cds size873
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927461.5063925-UTR-C-linearis_contig11:2942724..29436841622927461.5063925-UTR-C-linearis_contig11:2942724..2943684Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2942725..2943684 -
1690879714.128133-UTR-C-linearis_contig11:2942724..29436841690879714.128133-UTR-C-linearis_contig11:2942724..2943684Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2942725..2943684 -
1622927461.5881712-UTR-C-linearis_contig11:2946250..29465271622927461.5881712-UTR-C-linearis_contig11:2946250..2946527Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2946251..2946527 -
1690879714.2068849-UTR-C-linearis_contig11:2946250..29465271690879714.2068849-UTR-C-linearis_contig11:2946250..2946527Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2946251..2946527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927461.5223804-CDS-C-linearis_contig11:2943684..29437951622927461.5223804-CDS-C-linearis_contig11:2943684..2943795Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2943685..2943795 -
1690879714.1396239-CDS-C-linearis_contig11:2943684..29437951690879714.1396239-CDS-C-linearis_contig11:2943684..2943795Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2943685..2943795 -
1622927461.5376117-CDS-C-linearis_contig11:2944299..29443861622927461.5376117-CDS-C-linearis_contig11:2944299..2944386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2944300..2944386 -
1690879714.156338-CDS-C-linearis_contig11:2944299..29443861690879714.156338-CDS-C-linearis_contig11:2944299..2944386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2944300..2944386 -
1622927461.5531497-CDS-C-linearis_contig11:2944813..29449311622927461.5531497-CDS-C-linearis_contig11:2944813..2944931Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2944814..2944931 -
1690879714.1796784-CDS-C-linearis_contig11:2944813..29449311690879714.1796784-CDS-C-linearis_contig11:2944813..2944931Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2944814..2944931 -
1622927461.5675192-CDS-C-linearis_contig11:2945246..29454131622927461.5675192-CDS-C-linearis_contig11:2945246..2945413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2945247..2945413 -
1690879714.1882832-CDS-C-linearis_contig11:2945246..29454131690879714.1882832-CDS-C-linearis_contig11:2945246..2945413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2945247..2945413 -
1622927461.5781107-CDS-C-linearis_contig11:2945860..29462501622927461.5781107-CDS-C-linearis_contig11:2945860..2946250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2945861..2946250 -
1690879714.197382-CDS-C-linearis_contig11:2945860..29462501690879714.197382-CDS-C-linearis_contig11:2945860..2946250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2945861..2946250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1344.1prot_C-linearis_contig11.1344.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2943685..2946250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1344.1

>prot_C-linearis_contig11.1344.1 ID=prot_C-linearis_contig11.1344.1|Name=mRNA_C-linearis_contig11.1344.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=291bp
MRTCSHNHRLLTFPFSNQAHPSVCVAHLTNVPLRGAISGNRATRQQSCLP
SKSLPNIYLIPGASRPFGHLAVPFLFCGGGQAMCQLDATSSTKLFFSWPL
ICKGQVWRLVTNFLYFGALDVHFLFHMYFLVRYSRLLEEGDFRGRTGDFV
WFLLFCAALMIGAAPFLAMSFLGRPLAFMMVYVWGRRNEHVRMNLLGMFP
FTAPYLAWVFLILSAVLGSPLETDLLGIAVGHLFYFLEFVYPEVARMRGW
KYKQLVRAPRIVQQLCGQIPMERQGVPAVVAAPGEHPHND*
back to top

mRNA from alignment at C-linearis_contig11:2942725..2946527-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1344.1 ID=mRNA_C-linearis_contig11.1344.1|Name=mRNA_C-linearis_contig11.1344.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3803bp|location=Sequence derived from alignment at C-linearis_contig11:2942725..2946527- (Chordaria linearis ClinC8C monoicous)
TTCACTGATGCGTTGCACGAACCCACCCTTGTAGGGTCCAGTAGCCGACA
AACGTTTCGTTGGCAAGAGTTTGTGCAATATCAATATGTTGGAAATCGGG
GGTATGAAACTATCGAAAAACGGTTTAAAAGTTGAAAGTTGAGTTGCTCG
GGGAGGAGAAAGCGGGCCTTGTAAATATACGCAGAACAAGGTCTCGGGAG
ATGGAGATGGAGACACGTGTCCGCGTCACAGGTGTGGTGTTGCTGAAGAT
AAAACCCCAACCTTATTTGGTTTGATCATGCGTACATGTTCACACAACCA
TCGCCTTTTGACGTTTCCCTTTTCAAATCAGGCACACCCCTCTGTCTGTG
TTGCCCACTTGACGAATGTACCTCTACGCGGAGCCATCTCGGGGAACAGA
GCAACCAGACAGCAGAGCTGTTTGCCCAGTAAATCGTTACCCAACATTTA
CTTAATACCTGGCGCTTCTCGCCCGTTTGGCCATCTTGCCGTACCGTTCC
TTTTCTGCGGCGGGGGGCAGGCCATGTGCCAGTTAGACGCAACCTCTTCG
ACAAAACTCTTCTTCAGCTGGCCGCTGATATGCAAGGGGCAGGTCTGGCG
ATTGGTCACCAACTTCTTGTACTTCGGTGCCCTGGACGTGCACTTCCTCT
TCCACATGTACTTCCTCGTGAGTGCCGATGGTTAGCGCCACGAAAAGGGT
GAAGTGTCGCAGGTAGAGTAGTGCATTGCTGCCTAAGTTTTACCCACAGG
TCGCTGTAGTTTGGTTCGTGGGCATGAAACGTGAGGTGCGAGGGTGGTAG
CTGCCAATTTGTGTGAGTTGATGATCCCATTCCATCCTCCGTACTTGTAG
TGCACCTCTTTTTTTCAAGCTGAATCGCCCGCTTCTGCTACTGTATTCCT
CGCTTGAGTTGGTCCTGGCATCGGGGGCGAGTTCACAGCCGAACACAGCA
GCTCTCCGCACACCTGCACCCCGAGCTGCGGGTTTCGATACGTTTCCTTT
CTGACCGTATCGTAGAAAAAGAAAGCGGCCTGTTTATACGAAGCATGGGA
CTCGATCCCTCCCCCCAGCTGTTGCCACTCACCACCTTACCCATACCAAA
CCACACTTGGCCAGGTGAGATATAGCCGTTTGCTGGAGGAGGGGGACTTC
AGGGGTAGGACGGGAGACTTCGTGTGGTTCTTGCTCTTCTGCGCGGCGCT
CATGATTGGGGCCGCTCCGTTCTTGGCCATGAGCTTCCTCGGCCGCCCGT
TGGCCTTCATGATGGTCTACGTCTGGGGAAGGTGGGTGCTCATTGCTGTA
CTGCAATAGGCAAAATAAAGGCACTGGTAGCGCAGGGACTGCCTCTCGGT
CGGTGGTCAGCGGTTGGCGGAGTACCTTTTTTTGATTTTTTGTGCTGCTG
CAACGCCGTGTGGCTGACGGGGCGCCGTGGCTGACGGCTCTGGTGTCTTG
ACACGCCACATAAGAAGCCCTGGTGTTTTGGCGGCCAACTGCTTTCTTCC
GGTGTGTGTGTTCACTACGCTCCATACTGCTGCTGCCGCCGTGTAATCTG
GCCGTTTTCTCCCTCTTTTTTACGTACCCCGTTTTTTGTTCTGCAGGAGA
AATGAGCACGTGAGAATGAACCTTCTGGGAATGTTCCCCTTCACAGCGCC
CTACCTGGCGTGGGTGTTTCTTATCCTGTCCGCCGTTCTCGGGTCCCCGC
TTGAAACCGACCTGGTGGGTGCTCTCACTTGCTTTTTTGTTTGCGTGAGC
GATGCTCATCTTAGGTTACTCTTCTTTTACGTAGTCCTCGACCGTGACTG
ATGCAGTAAAATAGTAACAACAGCAATGTGGCGAGGTGCGGCGATGTGAT
GGCGTGGCTCCAGCCGCCCCATGGGAGATTTGACAAGTATCGGTCGCGTT
CACTGCTACTGCTGTGTCCAACAGAATAGAGAAAACGTCAGCTGTTTTGC
AGAGCGGGAGACAGCGTGTCCATGTGCTCTTGGCGCAGCGCGCGGGGGAC
AGAAGACCCGAACACGATACCAGGCGGTGCTGCCACACGCCAACGCCGAG
AGACCCGGACGTTCTTGTCTCACGTGTCTCGCGTGTCTCACGTGTTCCCT
CCCACGTTTCCATCGCCCTGCTCTTGGCTGGTGTTTCTCAGCTGGGCATC
GCCGTTGGACACCTCTTTTACTTCCTAGAGTTCGTGTACCCGGAGGTGGC
GAGAATGAGGGGTTGGAAGTACAAGCAGGTGTGTGGTTTGTGTAGGTAGG
TAGGTAGGCCGAGACATGTTCTACCATCGCCTTCAAGGCCCCCGCTCCGA
CCCTGTGTGTGACCGTGCCGTGTCGCCTTTGCCGAGTGGACAACAGAAGT
CGATGGCCCCTTGTAGGGCCCCTGCGCGTTTGTTAGGGTATGCCAGACTC
TACGAGGAAGCGGGTGGGACTCGCAGAACAGTTGTTTCCATGGTCGACGG
AACCTCCCGTCCTACGCCGGCGATTTGCGATATCTTCAGCAGGCGTTGTC
GGCGTTTTGCGTCTCAGTCCTGTCGTGCGGGTATCGTTAACGCTAACGGT
AACGTCGGGGCGTGGCCGTGCGTGACAGGAAGGACGCAGTAGGTTCCGTC
CCAACGGCGCGCATCTATCTGCTGTCCACCAGAAATAAAGTCGAAACGGA
TCAATCGACCTCACCTTTTCCATGCCCATGCTCATCGCATCTGTCGCCCC
TCCGGTTTCCGCTCTTCCGGCCGGCGGCGTAGCTCGTGCGGGCCCCGAGG
ATCGTGCAGCAGCTCTGCGGGCAGATACCGATGGAGCGCCAGGGGGTACC
AGCGGTGGTAGCGGCGCCCGGGGAACACCCGCACAACGACTGAACTGACG
GGCTGATCGACATACAGTACAAAGGCTGCGATCCGCCAAACACGTGGCGA
GCTCCCCCAGCTTAGCGAGCGTTTCTCCCGGCGGCCGTGTTCGACGATGG
AGGGTGGATGTTGGATGTACCATTAAACGATGGAGTTAGATTTTTGGTTT
TCGTTGTGTGTCGCCGGAAGGCTTCAGGACTTGTCCGGCTGCGGCACCCC
TTCGAGTTTGCCGATAAATGCAAGCGCTCATCAATAAAATCCATTGAGCG
GGACGATCGCTCCCGGAGGAATTCGATTCGTATATACCGCTCTTGAGAGC
ACGTGCGTGTGTATCTGTGTCTTGACATATTGGGTGGAGAGTGGAGAGAG
ACGGAGACATGGAGTTATGCCGTATGTGCGGTCTTGTTCTTGTTCTTCTT
GTTGTTGAATTCTCGCAGCGCGGCTTGCTTTGCGGGTGGTCAAGCGCAAA
CACCCGGGGATACAGCAGTAGGCTCAGGATTGTTCAAAGGATCTTGATTG
ATCAATGCAAGCGCTATCTGGTACATACAACGGCAGTTTGTTTAGGGAAC
CGGCGTACGTGTGCGTCGTGTTCCCCTGTTGCTCTGACAGCGAGGTGTGG
TGTGGCGAGGACATGGCATATCGTCTCGTTTCATCTCGCCAATAGGGAGA
GACGTTGACTACACCTTTTTTCGCGGTACTACGCAGACCACGCCACTTCA
TGCGTTGTTGGTCGGATGTTTTTTTTTCTTCCTCGCTACAAAAGAGTGCC
ACAAAGTTTGACCTCTCGTTAGCGCTGCTGTGCTTTATGCGATATTATCC
CGTCAGTTGCGCTTTGTTTTCCGGGCAGGAGATACGAGATACGGGCGGAC
GGTGCACGAGCGGGCGGCCCTCCTGTGCAGTACATAGCGCAACTCCATAT
TGACCTCTGTCCACGAACTACCAAGTATTTGCGAACAATGGGCACTACAC
GGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:2942725..2946527-

>mRNA_C-linearis_contig11.1344.1 ID=mRNA_C-linearis_contig11.1344.1|Name=mRNA_C-linearis_contig11.1344.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at C-linearis_contig11:2942725..2946527- (Chordaria linearis ClinC8C monoicous)
ATGCGTACATGTTCACACAACCATCGCCTTTTGACGTTTCCCTTTTCAAA
TCAGGCACACCCCTCTGTCTGTGTTGCCCACTTGACGAATGTACCTCTAC
GCGGAGCCATCTCGGGGAACAGAGCAACCAGACAGCAGAGCTGTTTGCCC
AGTAAATCGTTACCCAACATTTACTTAATACCTGGCGCTTCTCGCCCGTT
TGGCCATCTTGCCGTACCGTTCCTTTTCTGCGGCGGGGGGCAGGCCATGT
GCCAGTTAGACGCAACCTCTTCGACAAAACTCTTCTTCAGCTGGCCGCTG
ATATGCAAGGGGCAGGTCTGGCGATTGGTCACCAACTTCTTGTACTTCGG
TGCCCTGGACGTGCACTTCCTCTTCCACATGTACTTCCTCATGCGTACAT
GTTCACACAACCATCGCCTTTTGACGTTTCCCTTTTCAAATCAGGCACAC
CCCTCTGTCTGTGTTGCCCACTTGACGAATGTACCTCTACGCGGAGCCAT
CTCGGGGAACAGAGCAACCAGACAGCAGAGCTGTTTGCCCAGTAAATCGT
TACCCAACATTTACTTAATACCTGGCGCTTCTCGCCCGTTTGGCCATCTT
GCCGTACCGTTCCTTTTCTGCGGCGGGGGGCAGGCCATGTGCCAGTTAGA
CGCAACCTCTTCGACAAAACTCTTCTTCAGCTGGCCGCTGATATGCAAGG
GGCAGGTCTGGCGATTGGTCACCAACTTCTTGTACTTCGGTGCCCTGGAC
GTGCACTTCCTCTTCCACATGTACTTCCTCGTGAGATATAGCCGTTTGCT
GGAGGAGGGGGACTTCAGGGGTAGGACGGGAGACTTCGTGTGGTTCTTGC
TCTTCTGCGCGGCGCTCATGATTGGGGCCGCTCCGTTCTTGGCCATGAGC
TTCCTCGGCCGCCCGTTGGCCTTCATGATGGTCTACGTCTGGGGAAGGTG
AGATATAGCCGTTTGCTGGAGGAGGGGGACTTCAGGGGTAGGACGGGAGA
CTTCGTGTGGTTCTTGCTCTTCTGCGCGGCGCTCATGATTGGGGCCGCTC
CGTTCTTGGCCATGAGCTTCCTCGGCCGCCCGTTGGCCTTCATGATGGTC
TACGTCTGGGGAAGGAGAAATGAGCACGTGAGAATGAACCTTCTGGGAAT
GTTCCCCTTCACAGCGCCCTACCTGGCGTGGGTGTTTCTTATCCTGTCCG
CCGTTCTCGGGTCCCCGCTTGAAACCGACCTGGAGAAATGAGCACGTGAG
AATGAACCTTCTGGGAATGTTCCCCTTCACAGCGCCCTACCTGGCGTGGG
TGTTTCTTATCCTGTCCGCCGTTCTCGGGTCCCCGCTTGAAACCGACCTG
CTGGGCATCGCCGTTGGACACCTCTTTTACTTCCTAGAGTTCGTGTACCC
GGAGGTGGCGAGAATGAGGGGTTGGAAGTACAAGCAGCTGGGCATCGCCG
TTGGACACCTCTTTTACTTCCTAGAGTTCGTGTACCCGGAGGTGGCGAGA
ATGAGGGGTTGGAAGTACAAGCAGCTCGTGCGGGCCCCGAGGATCGTGCA
GCAGCTCTGCGGGCAGATACCGATGGAGCGCCAGGGGGTACCAGCGGTGG
TAGCGGCGCCCGGGGAACACCCGCACAACGACTGACTCGTGCGGGCCCCG
AGGATCGTGCAGCAGCTCTGCGGGCAGATACCGATGGAGCGCCAGGGGGT
ACCAGCGGTGGTAGCGGCGCCCGGGGAACACCCGCACAACGACTGA
back to top