mRNA_C-linearis_contig11.1342.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig11.1342.1
Unique Name	mRNA_C-linearis_contig11.1342.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 3.050e-99
Identity = 179/307 (58.31%), Postives = 198/307 (64.50%), Query Frame = 1

Query:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGGGKGLSQIKLLKHLQNACIVYACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKENGTMIKQAWLTFEVMGRSSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDSFVEGQPGGNLPSGEQEEDALDYLLNGVYHLSSGNAEDPIDVEDGDDDVADGGGAAGLQXXXXXXXXXXXXXXXXESPPGQLEDXXXXXXXXXGAPGVGGIKEEPAVGNQGDGDGAPSVDLEEGDGGYPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSG 921
            MDVMK+D+VQ LPLE NGYVEGTLDLLLGGG GLS+IKLLKHLQ+ CIVYACLAVKRNAGIV+ EAK+KAAAKGYKDIAVPGF+KWL+     + Q     ++ G + +                                       PG   P GEQEED LDYLLNGVYHLSSGNAEDPI++EDGDDD+ DGG                         P + E            PGVGGIKEEPAVGNQGDGDGAPS D+EE DG YPDR NKWMHPYLLTYCLIGR SSSEDP+LRTARKT G
Sbjct:    1 MDVMKIDHVQRLPLELNGYVEGTLDLLLGGGNGLSKIKLLKHLQSVCIVYACLAVKRNAGIVSMEAKHKAAAKGYKDIAVPGFYKWLRI--LQVAQGQRHNDLAGVADVRA-------------------------------------PG--TPXGEQEEDVLDYLLNGVYHLSSGNAEDPIELEDGDDDLEDGG------------------------EPEESEGDE---------PGVGGIKEEPAVGNQGDGDGAPSEDIEEVDGEYPDRGNKWMHPYLLTYCLIGRASSSEDPELRTARKTDG 233

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 1.180e-87
Identity = 136/146 (93.15%), Postives = 141/146 (96.58%), Query Frame = 1

Query:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGGGKGLSQIKLLKHLQNACIVYACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKENGTMIKQAWLTFEVMGRSSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDSFVE 438
            MDVMKLDNVQPLPLEFNGYVEGTL+LLLGG KGLSQIKLLKHLQN CIVYACLAVKRNAGIV+TEAKYKAAAKGYKDIAVPGFFKWLKENG +IKQAWLTFEVMGR+SLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWD  V+
Sbjct:    1 MDVMKLDNVQPLPLEFNGYVEGTLELLLGG-KGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCVD 145

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 7.290e-85
Identity = 143/189 (75.66%), Postives = 151/189 (79.89%), Query Frame = 1

Query:  388 MREMKKTYNKVWDSFVEGQPGGNLPSGEQEEDALDYLLNGVYHLSSGNAEDPIDVEDGDDDV---ADGGGAAGLQXXXXXXXXXXXXXXXXESPPGQLEDXXXXXXXXXGAPGVGGIKEEPAVGNQGDGDGAPSVDLEEGDGGYPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQ 945
            MREMKKTYNKVWDS VEGQPG NLPSGEQE DALDYLLNGVYHLS+GNAEDPI++ED DDD+   AD GGAAGLQ                ESPPGQ+ED         GAP VGGIKEEPAVGNQG GDGAPS ++EE DGGYPDRP+KWMHPYLLTYCLIGRPSSSEDPDLRT RKTSGPKGRGGKQ
Sbjct:    1 MREMKKTYNKVWDSLVEGQPGENLPSGEQEGDALDYLLNGVYHLSTGNAEDPIELEDIDDDLDNDADDGGAAGLQDNGRNDG---------ESPPGQVEDGGGAEESEGGAPAVGGIKEEPAVGNQGSGDGAPSDNIEEADGGYPDRPDKWMHPYLLTYCLIGRPSSSEDPDLRTTRKTSGPKGRGGKQ 180

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 3.830e-77
Identity = 127/192 (66.15%), Postives = 146/192 (76.04%), Query Frame = 1

Query:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGG-GKGLSQIKLLKHLQNACIVYACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKEN---GTMIKQAWLTFEVMGRSSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDSFVEGQPGGNLPSGEQEEDALDYLLNGVYHLSS--GNAEDPIDVED 558
            M+  K D VQ LPLEFN Y E  + +L      GL+  KLLKHLQN CIVYACL VKRNAGIV+T+AK+ AAAKGYKDIAV GFFKWLKEN        Q WLTFEVMGR+S++G  VLFT GKKLWKRFD +MR +KK YN VWDSFVEGQPG  LPSG Q+EDA++YLLNGVYH  S  GN E+PI++E+
Sbjct:    1 MNAKKRDGVQSLPLEFNSYAETVISMLRDRRSSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAVLGFFKWLKENLEADQYFSQPWLTFEVMGRTSMSGDAVLFTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPGDQLPSGSQDEDAIEYLLNGVYHTISNTGNEENPIELEE 192

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 4.210e-72
Identity = 148/323 (45.82%), Postives = 195/323 (60.37%), Query Frame = 1

Query:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGGGKGLSQIKLLKHLQNACIVYACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKENGTMIKQAWLTFEVMGRSSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDSFVEGQPGGNLPSGEQEEDALDYLLNGVYHLSSGNAEDPIDVED--GDDDVADGGGAAGLQXXXXXXXXXXXXXXXXESPPGQLEDXXXXXXXXXGAPGVGGIKEEPAVGNQGDGDGA------PSVDLEEGDGG-YPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGK 942
            MD+  +D V PLPL +N YV+ +++L L   K  +  + +  +QN CIVY+CLAVKRNAG+V TEAK  AAA+GY++IAVPGFF+W ++N        LT + +G +S +GAPVL+T+GKKLW +FD  M +MKK  N +WD +V+GQPGGNLPSG+  +DA++ LL+G+Y  + G+AE P+  +D       ADGG A                    ++  G   +         G   V  IK+E    N  D D +      PS D + GD G YP RP+ WMHP LL YC IGRPS SEDPDL TARKTSGP  RG K
Sbjct:    1 MDI-NVDEVLPLPLVYNDYVKTSINLALENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSE-LTMKRIGATSTDGAPVLYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAP-----------------EEKADGGAPNEDKPDQEGEKGKTAV--IKKER---NPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSK 299

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 4.230e-63
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1

Query:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGGGKGLSQIKLLKHLQNACIVYACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKENGTMIKQAWLTFEVMGRSSLNG 333
            MDVMKLDNVQPLPLEFNGYVEGTL+LLLGG KGLSQIKLLKHLQN CIVYACLAVKRNAGIV+TEAKYKAAAKGYKDIAVPGFFKWLKENG +IKQAWLTFEVMGR+SLNG
Sbjct:    1 MDVMKLDNVQPLPLEFNGYVEGTLELLLGG-KGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 4.460e-62
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1

Query:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGGGKGLSQIKLLKHLQNACIVYACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKENGTMIKQAWLTFEVMGRSSLNG 333
            MDVMKLDNVQPLPLEFNGYVEGTL+LLLGG KGLSQIKLLKHLQN CIVYACLAVKRNAGIV+TEAKYKAAAKGYKDIAVPGFFKWLKENG +IKQAWLTFEVMGR+SLNG
Sbjct:    1 MDVMKLDNVQPLPLEFNGYVEGTLELLLGG-KGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 4.690e-57
Identity = 121/173 (69.94%), Postives = 122/173 (70.52%), Query Frame = 1

Query:  427 SFVEGQPGGNLPSGEQEEDALDYLLNGVYHLSSGNAEDPIDVEDGDDDVADGGGAAGLQXXXXXXXXXXXXXXXXESPPGQLEDXXXXXXXXXGAPGVGGIKEEPAVGNQGDGDGAPSVDLEEGDGGYPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQ 945
            SFVEGQPGGNLPSGEQEEDALDY LNG                       D GG  G                  ESPPGQLED XXXXXXXX APGVGGIKEEPAVGNQGDGDGAPS D+EE DGGYPDR NKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGR GKQ
Sbjct:    8 SFVEGQPGGNLPSGEQEEDALDYPLNG-----------------------DNGGNDG------------------ESPPGQLEDGXXXXXXXXXAPGVGGIKEEPAVGNQGDGDGAPSEDIEEVDGGYPDRSNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRAGKQ 139

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BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5JUN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 6.250e-55
Identity = 114/223 (51.12%), Postives = 137/223 (61.43%), Query Frame = 1

Query:  310 MGRSSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDSFVEGQPGGNLPSGEQEEDALDYLLNGVYHLSSG--NAEDPIDVEDGDDDVADGGGAAGLQXXXXXXXXXXXXXXXXESPPGQLEDXXXXXXXXXGAP-GVGGIKEEPAVGNQGDGDGAPSVDLEEGDGGYPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPK--------GRGGKQ 945
            MG++S+ G  VLFTDG+KLWKRF K +RE+KK YN V   FVEGQPG  LPSG Q +DA++YLL+GVYH+ SG  NAEDPI++E+       GG   G +                    G  E           +P G GG+K+EP     G+GD APS ++   +GG+P RPNKWMH YLLT CLIGRP SSEDPDLRTARK SGPK        GRGGKQ
Sbjct:    1 MGKTSMTGGAVLFTDGEKLWKRFYKTLREIKKYYNPV---FVEGQPGDQLPSGSQGDDAIEYLLDGVYHMESGTGNAEDPIELEE-----RGGGEGEGWEDDSGESSPTESEDGESGKQKGTEEAVEPQESSGDDSPAGEGGMKKEPEDDTPGNGDDAPSEEITREEGGFPQRPNKWMHQYLLTLCLIGRPCSSEDPDLRTARKISGPKVRGASGAKGRGGKQ 215

[Close]

BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Match: A0A6H5KFI6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI6_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 2.950e-54
Identity = 105/159 (66.04%), Postives = 108/159 (67.92%), Query Frame = 1

Query:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGGGKGLSQIKLLKHL------------------------------------------------QNACIVYACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKENGTMIKQAWLTFEVMGRSSLNG 333
            MDVMKLDNVQPLPLEFNGYVEGTLDLLLGG KGLSQIKLLKHL                                                QN CIVYACLAVKRNAGIV+TEAKYKAAAKGYKDIAVPGFFKWLKENG +IKQAWLTFEVMGR+SLNG
Sbjct:    1 MDVMKLDNVQPLPLEFNGYVEGTLDLLLGG-KGLSQIKLLKHLYEPPHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 158

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot

BLAST of mRNA_C-linearis_contig11.1342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JGS6_9PHAE	3.050e-99	58.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUY9_9PHAE	1.180e-87	93.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FSK1_ECTSI	7.290e-85	75.66	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FPI6_ECTSI	3.830e-77	66.15	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L481_9PHAE	4.210e-72	45.82	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KDP2_9PHAE	4.230e-63	93.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZP4_9PHAE	4.460e-62	93.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWP9_9PHAE	4.690e-57	69.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUN8_9PHAE	6.250e-55	51.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFI6_9PHAE	2.950e-54	66.04	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig11	contig	C-linearis_contig11:2913431..2916670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	1358
Cds size	1275
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig11.1342.1	prot_C-linearis_contig11.1342.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig11 2913431..2916587 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927460.9453444-CDS-C-linearis_contig11:2913430..2913764	1622927460.9453444-CDS-C-linearis_contig11:2913430..2913764	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2913431..2913764 +
1690879713.708035-CDS-C-linearis_contig11:2913430..2913764	1690879713.708035-CDS-C-linearis_contig11:2913430..2913764	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2913431..2913764 +
1622927460.9631226-CDS-C-linearis_contig11:2914328..2914422	1622927460.9631226-CDS-C-linearis_contig11:2914328..2914422	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2914329..2914422 +
1690879713.7169886-CDS-C-linearis_contig11:2914328..2914422	1690879713.7169886-CDS-C-linearis_contig11:2914328..2914422	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2914329..2914422 +
1622927460.9768941-CDS-C-linearis_contig11:2915718..2915920	1622927460.9768941-CDS-C-linearis_contig11:2915718..2915920	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2915719..2915920 +
1690879713.7273736-CDS-C-linearis_contig11:2915718..2915920	1690879713.7273736-CDS-C-linearis_contig11:2915718..2915920	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2915719..2915920 +
1622927460.99411-CDS-C-linearis_contig11:2915942..2916587	1622927460.99411-CDS-C-linearis_contig11:2915942..2916587	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2915943..2916587 +
1690879713.74381-CDS-C-linearis_contig11:2915942..2916587	1690879713.74381-CDS-C-linearis_contig11:2915942..2916587	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig11 2915943..2916587 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927461.0070002-UTR-C-linearis_contig11:2916587..2916670	1622927461.0070002-UTR-C-linearis_contig11:2916587..2916670	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig11 2916588..2916670 +
1690879713.7549605-UTR-C-linearis_contig11:2916587..2916670	1690879713.7549605-UTR-C-linearis_contig11:2916587..2916670	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig11 2916588..2916670 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig11:2913431..2916670+
coding sequence from alignment at C-linearis_contig11:2913431..2916670+

protein sequence of mRNA_C-linearis_contig11.1342.1

>prot_C-linearis_contig11.1342.1 ID=prot_C-linearis_contig11.1342.1|Name=mRNA_C-linearis_contig11.1342.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=425bp
MDVMKLDNVQPLPLEFNGYVEGTLDLLLGGGKGLSQIKLLKHLQNACIVY
ACLAVKRNAGIVTTEAKYKAAAKGYKDIAVPGFFKWLKENGTMIKQAWLT
FEVMGRSSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDSFVEGQPG
GNLPSGEQEEDALDYLLNGVYHLSSGNAEDPIDVEDGDDDVADGGGAAGL
QDNGGNDGWADGGGDDGESPPGQLEDGGEPEESEGGAPGVGGIKEEPAVG
NQGDGDGAPSVDLEEGDGGYPDRPNKWMHPYLLTYCLIGRPSSSEDPDLR
TARKTSGPKGRGGKQEGEERVAQHQRRKRVGDKRCVHRGRFVVERNSDVR
SGRRNSKPCAGEERARSCGGGERARAGAPRPAGPYRQAGDGCGSFVGSRC
VEAGFGRRSRPQGSLGLCSLGQKS*

mRNA from alignment at C-linearis_contig11:2913431..2916670+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig11.1342.1 ID=mRNA_C-linearis_contig11.1342.1|Name=mRNA_C-linearis_contig11.1342.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3240bp|location=Sequence derived from alignment at C-linearis_contig11:2913431..2916670+ (Chordaria linearis ClinC8C monoicous)
ATGGATGTTATGAAACTAGACAATGTTCAGCCTCTCCCGCTGGAGTTCAA
CGGGTATGTCGAGGGCACGTTGGATTTGCTCCTGGGGGGCGGCAAGGGCC
TCTCGCAGATCAAGCTTCTAAAGCACCTCCAGAACGCGTGCATCGTGTAC
GCTTGCTTGGCGGTCAAGCGGAACGCCGGGATCGTCACCACGGAGGCGAA
GTACAAGGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCT
TCAAGTGGCTCAAGGAAAACGGCACAATGATCAAGCAGGCGTGGCTGACG
TTCGAGGTCATGGGCAGATCAAGTCTGAATGGAGGTGAGAAAACGAACGC
TTCGCGACACAACGTGAGACACAACCGACCGCCGCGACAGAGAGAGGCAG
GTTTCGAATGCGTATCCGACCCTCTGCGCCGCTATGGTCTGCTGTTCAAC
ACGATATGCGCAACGCCGGATGCAGGGTGTTTGTGTTTGGTCCGCTCAGC
GCAAATACATGTTTTCAAAGGGCAGACAGGCCATCACGGTGCGCTGCCTT
GACAGAGTCGTGATCCATCAACTAGGCAGCACCCACAAAGCTTTTCACCA
GAAGTAACTAGGCTGTGTGCAGTTTGGTGACATGGTCTGGGGTAATGAAG
CACGCCCGGCTTTGGGCAGCAATCGGTTATAAAATGACGACACGACAGCG
ATGGGCATCCTCCTGCAAAGTCGGTGTCACCAGGAAATGTTACCGACACA
ATTTTCTCATGTTGCATCAGGAAACAAACGGTTCGGTTAACGTGCTCATG
TCATGTCTGCTTTAGTGCTGTAGGGGATGGAAAGTCCTGTACTGCTGCTG
ACAGTGAAGTGCTACTGCTGTTCCACTGTTGTTCGACTTGCCCTGCAGCG
CCGGTCCTGTTCACCGATGGGAAGAAGTTGTGGAAGCGCTTCGACAAGGT
CATGCGCGAAATGAAGAAGACGTACAACAAAGTGTGGGACAGGTGTGTAG
ACTCTTGTGTGGTACTGCTGTATTGCGTGGTACTGCTGTATTGCGTGGTA
CTGCTGTATTGCGTGGTACTGCTGTTTTGCGTGTTACTGCTGTATTGCGT
GGTACTGCTGTATTGCGTGCTACTGCTGTATTGCGTGGTACTGCTGTATT
GCGTGGTACTGCTGTATTGCGTGCTACTGCTGTATTGCGTGGTACTGCTG
TTTTGCTCCGCAATAGTGGTTGAGGCTCGATACAGCTTTTGCCCCAAATA
TATCTACAGCAGCGTGTTGTGTATGCTCCCGAATCAGCGGTAAACTACAA
GCCCACCATCGGAAGAGGACTCTCATTGGCGGCGGTGTTTCTGCTGTACG
CAGCTGATGTAGAGCCAGCAGCTCATGTCGTGTCGAAGGATAGGCCTGCA
CGTGTCGAAGGGTAGGCCTGCACCATCGATTTAGCAGCTGGTAAACCGGA
AGTAGATGAGAGACGCGTTGGCGCACACCTGGTGGATGCATGCATGTGTG
CATGTCCTCTTGATCGGTTGAGCTCATGAGTCGTGTATGTGTTGGAAACT
GAACTCCCCAGCAGTCGTATTGAGCAGAGTCGAGCAAGGGAGGGCACACG
GCCATGCTCCTACACATCAGTATTGATCATGTATGTACTGCTTAATACGT
CACCACACTTTGGGGCGAGGGTCTAGGTTGGCACCGGTGCCTTCGCTGCC
ATAGTGGTCCGTCATCACACGCCTTTTTATTGTCTGGCCAACGAATCGGT
TGACCTGCAGTGCGACCTTTTTTCTTTCGGCTAGGTCGTGACCACCGTGT
GTGAATCACGCCCCCCCCCCAGCGACTCGCCGAACACATCACGGCGCTTC
GCGCTTGGTGAATGCGAGCCTGGCCGGCGAAAACCCGGCGTGCTCCGTCC
CGGCTTTGTAGGGATGCGAGGTCTATGGTCTAACGACTGCGGCATGCATG
ATACTGAGTACACCCCAGCGCTCAAAACGCACTAGTGCTGCGAGCAATAG
GTAGTTCAACCCCAACCCACAACCCTGTAATTTTCCAGCAAAAACCGCAA
CATCCTTGGTCATAGCCCCCCTTCATGGCATAGCCCGCCCCCAATCATTA
CTCCACCGGCGTACCAAACAAATTGGCGTAATCCCGGCGTACCGTTTTCT
CTGTCCTCTGTAACCTCACCCCTTCTTGCAACCCCCCCCTCTCCCCCGCG
AGGTCTATGGTCTAACGACTACGGCATGCATGATACTGAGTACACCCCCC
CTCCCCCCTCTCCCTCCTCCGGTGCACCCCTGTCCCAGTTTCGTGGAAGG
ACAACCTGGAGGAAACCTGCCGTCGGGCGAGCAAGAAGAAGATGCCCTCG
ACTACCTTCTGAACGGTGTATACCACCTCAGCTCCGGGAACGCCGAGGAC
CCCATCGATGTGGAAGACGGCGACGACGATGTTGCGGACGGCGGGGGAGC
GGCGGGCTTGCAGGACAACGGTGGCAACGATGGGTGGGCAGTCGCCACCG
GGGCAGCTCGAGGACGGCGGTGGCGACGATGGGGAATCGCCACCGGGGCA
GCTCGAGGACGGCGGCGAGCCGGAGGAAAGCGAAGGTGGTGCACCGGGGG
TGGGGGGGATCAAGGAGGAGCCAGCCGTTGGCAACCAGGGCGACGGGGAT
GGCGCCCCCTCCGTAGATCTCGAAGAAGGAGACGGCGGGTATCCTGACAG
GCCCAACAAGTGGATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAA
GGCCAAGCAGCAGCGAGGACCCTGACCTTAGGACCGCGCGGAAAACGTCC
GGGCCGAAGGGTCGCGGAGGGAAGCAGGAAGGCGAAGAAAGGGTCGCCCA
GCACCAGCGACGGAAGCGGGTCGGAGACAAGCGGTGCGTACACCGAGGTA
GATTTGTCGTCGAGCGCAATTCGGATGTTCGCAGCGGCCGGCGAAACTCA
AAGCCGTGCGCAGGTGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACG
CGCAAGAGCAGGCGCGCCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTG
ACGGCTGTGGAAGCTTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGA
CGAAGAAGCCGCCCACAGGGCTCGCTGGGATTATGCTCGCTTGGCCAAAA
AAGCTAAAATCGACGACCTCAGGGGAAGTTGGAGTTTACACTGGAAGGGC
CAAGGGCGATGGCACTGCGAGCCTCTATATCGGCCTTGTA

Coding sequence (CDS) from alignment at C-linearis_contig11:2913431..2916670+

>mRNA_C-linearis_contig11.1342.1 ID=mRNA_C-linearis_contig11.1342.1|Name=mRNA_C-linearis_contig11.1342.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at C-linearis_contig11:2913431..2916670+ (Chordaria linearis ClinC8C monoicous)
ATGGATGTTATGAAACTAGACAATGTTCAGCCTCTCCCGCTGGAGTTCAA
CGGGTATGTCGAGGGCACGTTGGATTTGCTCCTGGGGGGCGGCAAGGGCC
TCTCGCAGATCAAGCTTCTAAAGCACCTCCAGAACGCGTGCATCGTGTAC
GCTTGCTTGGCGGTCAAGCGGAACGCCGGGATCGTCACCACGGAGGCGAA
GTACAAGGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCT
TCAAGTGGCTCAAGGAAAACGGCACAATGATCAAGCAGGCGTGGCTGACG
TTCGAGGTCATGGGCAGATCAAGTCTGAATGGAGATGGATGTTATGAAAC
TAGACAATGTTCAGCCTCTCCCGCTGGAGTTCAACGGGTATGTCGAGGGC
ACGTTGGATTTGCTCCTGGGGGGCGGCAAGGGCCTCTCGCAGATCAAGCT
TCTAAAGCACCTCCAGAACGCGTGCATCGTGTACGCTTGCTTGGCGGTCA
AGCGGAACGCCGGGATCGTCACCACGGAGGCGAAGTACAAGGCAGCGGCC
AAGGGCTACAAGGACATCGCTGTCCCAGGATTCTTCAAGTGGCTCAAGGA
AAACGGCACAATGATCAAGCAGGCGTGGCTGACGTTCGAGGTCATGGGCA
GATCAAGTCTGAATGGAGCGCCGGTCCTGTTCACCGATGGGAAGAAGTTG
TGGAAGCGCTTCGACAAGGTCATGCGCGAAATGAAGAAGACGTACAACAA
AGTGTGGGACAGCGCCGGTCCTGTTCACCGATGGGAAGAAGTTGTGGAAG
CGCTTCGACAAGGTCATGCGCGAAATGAAGAAGACGTACAACAAAGTGTG
GGACAGTTTCGTGGAAGGACAACCTGGAGGAAACCTGCCGTCGGGCGAGC
AAGAAGAAGATGCCCTCGACTACCTTCTGAACGGTGTATACCACCTCAGC
TCCGGGAACGCCGAGGACCCCATCGATGTGGAAGACGGCGACGACGATGT
TGCGGACGGCGGGGGAGCGGCGGGCTTGCAGGACAACGGTGGCAACGATG
GGTGGGCATTTCGTGGAAGGACAACCTGGAGGAAACCTGCCGTCGGGCGA
GCAAGAAGAAGATGCCCTCGACTACCTTCTGAACGGTGTATACCACCTCA
GCTCCGGGAACGCCGAGGACCCCATCGATGTGGAAGACGGCGACGACGAT
GTTGCGGACGGCGGGGGAGCGGCGGGCTTGCAGGACAACGGTGGCAACGA
TGGGTGGGCAGACGGCGGTGGCGACGATGGGGAATCGCCACCGGGGCAGC
TCGAGGACGGCGGCGAGCCGGAGGAAAGCGAAGGTGGTGCACCGGGGGTG
GGGGGGATCAAGGAGGAGCCAGCCGTTGGCAACCAGGGCGACGGGGATGG
CGCCCCCTCCGTAGATCTCGAAGAAGGAGACGGCGGGTATCCTGACAGGC
CCAACAAGTGGATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGG
CCAAGCAGCAGCGAGGACCCTGACCTTAGGACCGCGCGGAAAACGTCCGG
GCCGAAGGGTCGCGGAGGGAAGCAGGAAGGCGAAGAAAGGGTCGCCCAGC
ACCAGCGACGGAAGCGGGTCGGAGACAAGCGGTGCGTACACCGAGGTAGA
TTTGTCGTCGAGCGCAATTCGGATGTTCGCAGCGGCCGGCGAAACTCAAA
GCCGTGCGCAGGTGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCG
CAAGAGCAGGCGCGCCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGAC
GGCTGTGGAAGCTTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACG
AAGAAGCCGCCCACAGGGCTCGCTGGGATTATGCTCGCTTGGCCAAAAAA
GCTAAGACGGCGGTGGCGACGATGGGGAATCGCCACCGGGGCAGCTCGAG
GACGGCGGCGAGCCGGAGGAAAGCGAAGGTGGTGCACCGGGGGTGGGGGG
GATCAAGGAGGAGCCAGCCGTTGGCAACCAGGGCGACGGGGATGGCGCCC
CCTCCGTAGATCTCGAAGAAGGAGACGGCGGGTATCCTGACAGGCCCAAC
AAGTGGATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAG
CAGCAGCGAGGACCCTGACCTTAGGACCGCGCGGAAAACGTCCGGGCCGA
AGGGTCGCGGAGGGAAGCAGGAAGGCGAAGAAAGGGTCGCCCAGCACCAG
CGACGGAAGCGGGTCGGAGACAAGCGGTGCGTACACCGAGGTAGATTTGT
CGTCGAGCGCAATTCGGATGTTCGCAGCGGCCGGCGAAACTCAAAGCCGT
GCGCAGGTGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCGCAAGA
GCAGGCGCGCCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTG
TGGAAGCTTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGAA
GCCGCCCACAGGGCTCGCTGGGATTATGCTCGCTTGGCCAAAAAAGCTAA