mRNA_C-linearis_contig11.1337.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1337.1
Unique NamemRNA_C-linearis_contig11.1337.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2836646..2837669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size353
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1337.1prot_C-linearis_contig11.1337.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2836748..2837669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927426.7262053-UTR-C-linearis_contig11:2836645..28367471622927426.7262053-UTR-C-linearis_contig11:2836645..2836747Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2836646..2836747 +
1690879693.8156228-UTR-C-linearis_contig11:2836645..28367471690879693.8156228-UTR-C-linearis_contig11:2836645..2836747Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2836646..2836747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927426.7371793-CDS-C-linearis_contig11:2836747..28368281622927426.7371793-CDS-C-linearis_contig11:2836747..2836828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2836748..2836828 +
1690879693.8250585-CDS-C-linearis_contig11:2836747..28368281690879693.8250585-CDS-C-linearis_contig11:2836747..2836828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2836748..2836828 +
1622927426.7540212-CDS-C-linearis_contig11:2837501..28376691622927426.7540212-CDS-C-linearis_contig11:2837501..2837669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2837502..2837669 +
1690879693.833545-CDS-C-linearis_contig11:2837501..28376691690879693.833545-CDS-C-linearis_contig11:2837501..2837669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2837502..2837669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1337.1

>prot_C-linearis_contig11.1337.1 ID=prot_C-linearis_contig11.1337.1|Name=mRNA_C-linearis_contig11.1337.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
MRSVYEWRQVGRRGEFHVSLVYGDRVQVKVQLPEDSSQPDPAIDLFSCDL
QLLHPFTRSARDSLTKNFIVVPEDNNDDNSNTT
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mRNA from alignment at C-linearis_contig11:2836646..2837669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1337.1 ID=mRNA_C-linearis_contig11.1337.1|Name=mRNA_C-linearis_contig11.1337.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1024bp|location=Sequence derived from alignment at C-linearis_contig11:2836646..2837669+ (Chordaria linearis ClinC8C monoicous)
GTTGACGGGTCAAGGGCGCGATGTCGGGGGGCATGGCGAGCATCGAATTG
ATTGAAGGGCTGATGAGGGCTCACAAGTGGCGATTTACCCTGAAAGTTGG
CGATGCGATCGGTGTACGAGTGGCGTCAAGTTGGAAGGAGGGGCGAGTTT
CACGTTTCACTGGTATATGGAGACAGGGTTCAGGTGAGGCGGAGTGAAGA
CGCGGAGTTTGAGTTTGAGTTTGAGAGCCACCATACGATTGCACCCAGCT
TCGCTCTCTTACCTTGTGGGTGTGGTGCCGAGTTGTCTACTTTCAAAAAA
GTTCGTTGCATAGGAACAGTGGAAAGTGCTTAGTTCGTGTGTACCCTTGA
TGAGGGAGAGACTGCTGAAACTCTCTCGCGTTAAAAAATACTCCGGAGTA
CCAGTCAAGCACCGCAGAAGGTGGGTGGGGGCCTCAGGGAGAGGACCCTT
CTGTGTGACCACGGTTCAGATGTTCTGGCAAGATGCCCCGCGTGGCAAGG
CGCCCCTGCGAACTCTGGAAATAAATGTGAAGGCGAAAAAAAAAAAAACG
GAGTACTTCTGTATTTAGGAACAACACGAAAACGTTGTGTCCCTGAACAT
GAGTTGATCTCCAACCCGCATTCACGCGAAATGGATCTATGCAGCACGTT
TTACTCGATAGATCTTGAAGGGAGGACAGCCAATCATTTCACATTTGGCA
TATGGAAGAAGGGGATAATCTCGCAGCAGTGCACGGGAAAGTTTGTTGAC
GTGTGCATAAAAATAGATGGCAAGGCGCAGCACCCGACAAGAAAAGGTTA
CCGATACCCAGCACGGCAACTACCCTCTGGAACTTATGTACATACTGAAA
ATGAAGGTTAAGGTTCAACTCCCGGAGGACAGCAGCCAGCCCGACCCCGC
GATCGACTTATTTTCGTGCGACCTTCAGCTTCTGCACCCCTTCACAAGGT
CGGCGCGAGACTCCCTCACGAAGAATTTCATCGTGGTGCCGGAGGACAAC
AACGACGACAACAGCAACACGACG
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Coding sequence (CDS) from alignment at C-linearis_contig11:2836646..2837669+

>mRNA_C-linearis_contig11.1337.1 ID=mRNA_C-linearis_contig11.1337.1|Name=mRNA_C-linearis_contig11.1337.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig11:2836646..2837669+ (Chordaria linearis ClinC8C monoicous)
ATGCGATCGGTGTACGAGTGGCGTCAAGTTGGAAGGAGGGGCGAGTTTCA
CGTTTCACTGGTATATGGAGACAGGGTTCAGATGCGATCGGTGTACGAGT
GGCGTCAAGTTGGAAGGAGGGGCGAGTTTCACGTTTCACTGGTATATGGA
GACAGGGTTCAGGTTAAGGTTCAACTCCCGGAGGACAGCAGCCAGCCCGA
CCCCGCGATCGACTTATTTTCGTGCGACCTTCAGCTTCTGCACCCCTTCA
CAAGGTCGGCGCGAGACTCCCTCACGAAGAATTTCATCGTGGTGCCGGAG
GACAACAACGACGACAACAGCAACACGACGGTTAAGGTTCAACTCCCGGA
GGACAGCAGCCAGCCCGACCCCGCGATCGACTTATTTTCGTGCGACCTTC
AGCTTCTGCACCCCTTCACAAGGTCGGCGCGAGACTCCCTCACGAAGAAT
TTCATCGTGGTGCCGGAGGACAACAACGACGACAACAGCAACACGACG
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