mRNA_C-linearis_contig11.1335.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A6H5KWJ5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ5_9PHAE) HSP 1 Score: 538 bits (1385), Expect = 1.170e-189 Identity = 271/361 (75.07%), Postives = 300/361 (83.10%), Query Frame = 3
Query: 60 RTHPSTWPEVTSSMNGFPFPQLTPARDV-RALRPGAA--EDPQLVVLPDGQTFYLQRRLVNSLFGAVFHGLSGRCSDPNDPNTFVMPRSPEELFHVAVKRSSLEEMRRTPQENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVTPEVGTGEEQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDAAVVMDFGMVTRMRAGPQGEVLLNQDATRFGKLRYMAPEIYQVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIP--SQGVFG-TSEIWSYTILAQHGAGVMLERLNLPERISAAAVDLLCEMLVIDRHARPHSAASLAQHPFFAA 1124
R HPSTWPEV SSMNGFPFP L+ R++ R R G+ EDP L+VLPDG+TFYLQRRLVNSLFGAVFHG+ G C + NDP +F P EE FHVAVKRSSL MRRTPQENVF+EI+VMR LAAG QAGGHQFVMPLVAACMS+THVYVVTPYCGGGDLLRMV P GTGE+QARKWFRQIL GLA+VHS+GLCHHDFSPENVVITRMGDAAVVMDFGMV RMR G +GEVL +DA RFGKLRYMAPEI+ Q YDGR+IDIWS GVTLLVCL G+YPW APTR+P +Q ++ S+I+SYT L QHGAGVML+RLNL RISA AVDLLC+MLV+DR RP SA LAQHPFFAA
Sbjct: 3 RGHPSTWPEVLSSMNGFPFPHLSACRELNRRARDGSEDHEDPDLIVLPDGKTFYLQRRLVNSLFGAVFHGIQGVCPNTNDPFSFAAPFREEEQFHVAVKRSSLAHMRRTPQENVFKEIAVMRDLAAGSRQAGGHQFVMPLVAACMSETHVYVVTPYCGGGDLLRMVEPGEGTGEQQARKWFRQILYGLAHVHSRGLCHHDFSPENVVITRMGDAAVVMDFGMVQRMRRGSRGEVLPARDAQRFGKLRYMAPEIWNNQEYDGRQIDIWSVGVTLLVCLLGDYPWQAPTRVPMEAQEIYRRVSDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPFFAA 363
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: D7FM76_ECTSI (CBL-interacting serine/threonine-protein kinase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM76_ECTSI) HSP 1 Score: 248 bits (634), Expect = 2.150e-77 Identity = 133/245 (54.29%), Postives = 163/245 (66.53%), Query Frame = 3
Query: 279 DPNDPNTFVMPRSPEELFHVAVKRSSLEEMRRTPQENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVTPEVGTGEEQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDAAVVMDFGMVTRMRAGPQGEVLL----------NQDATRF-----GKLRYMAPEIYQVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTIL 968
+P+D TFV P E+ HVAVK SSLE+M QEN F+EISVMR+L QAG H VMP+++ACMS TH++VVTP+ GGDLL V GTGE AR+WFRQILLGLAY+H +GLCHHD SPENVVIT G+AAVVMDFGMV R++ GP G+ + + D R G RYMAPEI++ + YDGR DIWS V+LLVCL GE W APTR+P G I++Y ++
Sbjct: 4 NPDDSATFVTPFREEDRTHVAVKMSSLEKMATVSQENAFKEISVMRHLM----QAGEHPHVMPVISACMSTTHLFVVTPFYMGGDLLSRVELH-GTGEGNARRWFRQILLGLAYIHQQGLCHHDVSPENVVITNNGEAAVVMDFGMVQRLQTGPNGQSRMCPQECSIDSISADRARMCFIGDGICRYMAPEIWENREYDGRSADIWSVAVSLLVCLVGEEQWKAPTRVP----LGDRGIYTYVLV 239
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A6H5KM61_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM61_9PHAE) HSP 1 Score: 184 bits (468), Expect = 2.320e-53 Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 3
Query: 156 PGAAEDPQLVVLPDGQTFYLQRRLVNSLFGAVFHGLSGRCSDPNDPNTFVMPRSPEELFHVAVKRSSLEEMRRTPQENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVTPEVGTGEEQARKWFRQILLGLAYVHSK 632
P A EDP LV LP G+TF+LQRRLV+S+FGAVFHG+ G DP D TFV P EE HVAVK SSLE M QEN F+EI+VM++L G GGH+ VM +++ACMS TH++VVTP+C GDLL V + G GE++AR+WFRQILLGLA++H +
Sbjct: 29 PAATEDPTLVRLPSGRTFWLQRRLVDSIFGAVFHGIEGWWPDPYDSATFVTPFREEEQTHVAVKMSSLERMATVSQENAFKEIAVMKHLMQG----GGHRHVMSVISACMSSTHLFVVTPFCNEGDLLSWVEVD-GIGEDKARRWFRQILLGLAHIHQQ 182
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A6U0UU60_9STRA (Hypothetical protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UU60_9STRA) HSP 1 Score: 152 bits (383), Expect = 7.670e-39 Identity = 112/335 (33.43%), Postives = 165/335 (49.25%), Query Frame = 3
Query: 138 DVRALRPGAAEDPQLVVLPDG--QTFYLQRRLVNSLFGAVFHGLSGRCSDPNDPNTFVMPRSPEELFHVAVKRSSL---EEMRRTPQENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVTPEVGTGEEQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDA---AVVMDFGMVTRMRAGPQGEVLLNQDATRFGKLRYMAPEIYQVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTILAQHGAGVMLERLNLPERISAAAVDLLCEMLVIDRHARPHSAASLAQHPFF 1118
D R L G E L+ P+G Q ++L R L ++++G V G R DP+ + +E VAVK SL EEMR EN F EI+ M +L + QAGGH V+ A C +Q+H++++ PYC GG+L ++ E+AR FRQ+ G+ ++ + H D S ENV++ R + A+++DFGM R+ G R GKL YM+PEI +P+DG KID+W+ GV L + L G PW R + Y + +LE + R+ AVDLL + V D R S + +HP++
Sbjct: 46 DERGLDVGGGEI-LLLDTPNGDFQAYHLVRTLRDAIYGRVVSGC--RVIPTEDPDRVRL----DERAMVAVKMMSLQKIEEMRGRHAENPFNEIACMSFLHS---QAGGHPHVLMYEALCRTQSHLFMIMPYCSGGELHSVIEENGALEPERARALFRQMTQGVEFLGRASVAHRDLSLENVLLHRRIEEERIAMLIDFGMALRIPRDKDGRCHWISRQLRAGKLHYMSPEIISQRPFDGSKIDVWALGVMLFIMLVGVPPWRMADRRDQR----------YICVVSGELPRLLEHWGV--RVPGDAVDLLKRIFVEDIETRI-SIPEILRHPWY 357
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A835YUI9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI9_9STRA) HSP 1 Score: 135 bits (340), Expect = 7.810e-33 Identity = 92/249 (36.95%), Postives = 131/249 (52.61%), Query Frame = 3
Query: 384 ENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVTPEVGTGEEQARKWFRQILLGLAYVHSKGLC--HHDFSPENVVITRMGDAAVVMDFGMVTRM-RAGPQGEVLLNQDATRFGKLRYMAPEIYQVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTILAQHGAGVMLERLNLPERISAAAVDLLCEMLVIDRHARPHSAASLAQHPFFA 1121
EN + EI+ M+ +AA GGH ++P+ AA + +Y+V P+C GGDL V G EEQAR FRQ+ GLA++ + + H D S ENV++ G A +VMDFGM R+ RA G L TR GK YM+PE++ P+D K D+W+ GV V L P++ P G + + I +H V L++ +SA A DL+ L+ D RP +AA L QHP+ +
Sbjct: 112 ENPYDEIAAMQLIAA----RGGHPSILPITAALRDENTIYLVLPFCNGGDLFDYVNEGGGLTEEQARPLFRQLADGLAFLQREDIAILHRDMSLENVLM-HDGAALLVMDFGMSIRLPRAEEPGVRALIPPQTRRGKRSYMSPEVFAEMPFDA-KADVWALGVMCYVMLLRRLPYSWP--------HGNDQYFQL-IAQRHELAVRLQQWGF--NVSAEAADLMQRCLMADAQQRP-TAAELLQHPWIS 342
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A7S2UUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUC5_9STRA) HSP 1 Score: 133 bits (334), Expect = 6.110e-32 Identity = 107/341 (31.38%), Postives = 168/341 (49.27%), Query Frame = 3
Query: 108 FPFPQLTPA----RDVRALRPGAAEDPQ-LVVLPDGQTFYLQRRLVNSLFGAVFHGLSGRCSDPNDPNTFVMPRSPEELFHVAVK---RSSLEEMRRTPQENVFREISVMRYLAA----------GVGQA---GGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVTPEVGTGEEQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDAAVVMDFGMVTRMRAGPQ-GEVLLNQDATRFGKLRYMAPEIY-QVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTILAQHGAGVMLERLNLPE-RISAAAVDLLCEML 1058
FP P ++ A + VR R G + Q LV + G + L R L ++G V H + R D + + R +VA+K + ++E+R E+ +EI+ M++L+ G G++ GGH V+PL+ + VY V PYCG +L V + E++AR++FR+IL G Y+HS+G+CH D S ENV++++ + +++D GM RM G+ LL + GK YM+PEI+ +P+ G ID W+ G+ L + L G P+ T + + F W + E L+L E +S AVDLL ML
Sbjct: 10 FPRPVISAAFLDRKVVRDQRSGNLVEGQCLVSVASGNVYLLVRTLRECIYGKVKHAI--RIVDVGN-GVYEYGRE-----YVAIKVMFKRKIQELRGRHNEDPIKEIAAMQFLSTAPEGVEGTKQGEGESTHQGGHPNVLPLLECVQDEDLVYCVMPYCGA-ELFSFVEQQGAFLEDRARQYFREILCGTNYLHSRGVCHRDLSLENVLVSQ--NTCIIIDMGMCLRMPVDQTTGKHLLINPQGQCGKRNYMSPEIFLNKRPFSGEAIDFWACGIILFIMLTGVPPFETATEVDPR--FQMISSWRLS-----------EMLSLWEINLSPEAVDLLSRML 326
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A024GDE3_9STRA (Protein kinase domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDE3_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.450e-30 Identity = 84/249 (33.73%), Postives = 124/249 (49.80%), Query Frame = 3
Query: 384 ENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMV-TPEVGTGE-EQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDAAVVMDFGMVTRMRAGPQGEVLLNQDATRFGKLRYMAPEIYQVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTILAQHGAGVMLERLNLPERISAAAVDLLCEMLVIDRHARPHSAASLAQHPFFAA 1124
ENV E+ + R+L G FV+ ++ H+Y++ YC G+L +V T + G E +Q + WFRQI LG+ ++HS G H D S ENV++T G + DFG+ T A NQ GK YMAPE+ Q Q YD K+DIWS G+ L L G P+ + + ++ HG G++L+ + ++I + AVDLL ++L + R S + QHPF A
Sbjct: 62 ENVVFELGMHRFLQTQPRNQIGKSFVLEMLGEMEMDNHLYMIFEYCEQGELFDLVRTSKQGRPEIDQVKIWFRQIALGVQFLHSCGYAHRDLSLENVLVTSEG-VCKICDFGLATYADAN------CNQTV---GKKVYMAPEVAQAQHYDPVKVDIWSLGIMLFTMLAGSPPFDVADASDPR----------FQVIVVHGVGMLLQVWKMRDQIPSLAVDLLDQLLCVYASDRI-SVEKMLQHPFLIA 289
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: F0WQQ7_9STRA (Protein kinase putative n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQQ7_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.540e-29 Identity = 91/274 (33.21%), Postives = 132/274 (48.18%), Query Frame = 3
Query: 336 VAVKRSSLEEMRR---------TPQENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMV-TPEVGTGE-EQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDAAVVMDFGMVTRMRAGPQGEVLLNQDATRFGKLRYMAPEIYQVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTILAQHGAGVMLERLNLPERISAAAVDLLCEMLVIDRHARPHSAASLAQHPFFAA 1124
VAVK+ SL +R ++ VF E+ + RYL G FV+ ++ H+Y++ YC G+L +V T + G E EQ R WFRQI+LG+ ++HS G H D S ENV++T G + DFG+ T A V GK YMAP++ Q Q YD K+DIWS G+ L L G P+ + Y ++ HG G++L+ + ++I + AVDLL +L R + + QHPF A
Sbjct: 95 VAVKKVSLACAKRGVTLKCGKKIAEDAVF-ELGMHRYLQTQRHSQIGKSFVLGMLGEMEMANHLYMIFEYCEQGELFDLVRTSKQGRLEIEQVRVWFRQIVLGVQFLHSCGYAHRDLSLENVLVTSKG-VCKICDFGLATYADANCNQAV---------GKKVYMAPDVAQAQFYDPVKVDIWSLGIMLFTMLAGSPPFDVANASDPR----------YQVVVTHGVGILLQVWKMSDQIPSVAVDLLDRLLCAHPSERI-TVDQMLQHPFLTA 346
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A397DIW4_9STRA (Protein kinase domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DIW4_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.240e-29 Identity = 91/308 (29.55%), Postives = 145/308 (47.08%), Query Frame = 3
Query: 198 GQTFYLQRRLVNSLFGAVFHGLSGRCSDPNDPNTFVMPRSPEELFHVAVKRSSLEEMRR-TPQENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVTPEVGTGEEQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDAAVVMDFGMVTRMRAGPQGEVLLNQDATRFGKLRYMAPEIYQVQ-PYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTILAQHGAGVMLERLNLPERISAAAVDLLCEMLVIDRHARPHSAASLAQHPF 1115
G + R L ++G V H + R PN TFV VA+K S +++ QEN E++ +YL+ GH P + +Y V P+C GG+L +V E + R+WF Q+L G+AY+ S+ +CH D S ENV++ G+ + ++DFG+ + G + GK+ YM PEIY+ Q P++G DIWS GV L + + G P+ P + + + ++A ML+ + +S+A DLL +LV+ +R S + QHP+
Sbjct: 104 GHVYEFVRTLRKCIYGKVKHAVQLRLH-PNGNGTFVRTN-----VEVAIKVMSKAIIQQGNLQENPLVELATQQYLSTP-----GH----PHIECLHDPEFIYAVLPFCRGGELFSLVETGGAMDEGECRRWFTQVLRGVAYLQSRYICHRDMSLENVLLD--GNTSKIIDFGLCVGIPVDANGMTYALPPSGAVGKIFYMPPEIYRNQVPFNGFAADIWSMGVMLFIMVTGAPPFERPDDMDPR----------FQMIATGRMNEMLDSWGMTH-VSSAVRDLLNRLLVVQDPSRRLSLDQIMQHPW 383
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Match: A0A4D9CSS4_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSS4_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.890e-28 Identity = 98/314 (31.21%), Postives = 153/314 (48.73%), Query Frame = 3
Query: 180 LVVLPDGQTFY-LQRRLVNSLFGAVFHGLSGRCSDPNDPNTFVMPRSPEELFHVAVKRSSLEEMRRTPQENVFREISVMRYLAAGVGQAGGHQFVMPLVAACMSQTHVYVVTPYCGGGDLLRMVT-PEVGTGEEQARKWFRQILLGLAYVHSKGLCHHDFSPENVVITRMGDAAVVMDFGMVTRMRAGPQGEVLLNQDATRFGKLRYMAPEIYQVQPYDGRKIDIWSAGVTLLVCLYGEYPWAAPTRIPSQGVFGTSEIWSYTILAQHGAGVMLERLNLPERISAAAVDLLCEMLVIDRHARPHSAASLAQHPF 1115
LV L Q Y L R L +++G V G++ D D + + P VAVK E++ QE+ +EIS M+YL + G+ VM LV + HVY+V P+C GG++ + EE AR +F QIL GL Y+H++G+ H D S EN++ + V++D GM + +VL+ + GKL YM+ EIYQ Q + +DIW+ GV L + L G P P I + + +LA+ +++ + + +S A DLL +L +D AR + + +HP+
Sbjct: 132 LVSLAGTQAVYALIRTLRPAIYGKVKLGMTLEARDA-DGSYHMSTERP-----VAVKIVRKEKLGGRSQEDPLKEISAMQYLGSP-----GNPHVMGLVEVLEDEEHVYIVLPFCDGGEVCQWFERSRYMLREEVARGFFLQILSGLTYLHARGVVHRDMSLENLLYDQRTKRCVIIDLGMCLHLPVPATSDVLVRKQGY-CGKLTYMSHEIYQNQDFYAAAVDIWALGVILFIMLTGIPPVETPAEIDPR----------FRMLAEGRLSELMDLWRV-DFLSPEARDLLVGLLQVDPRARL-TLEEIREHPW 421 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1335.1 >prot_C-linearis_contig11.1335.1 ID=prot_C-linearis_contig11.1335.1|Name=mRNA_C-linearis_contig11.1335.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=362bp MAQQHGRTHPSTWPEVTSSMNGFPFPQLTPARDVRALRPGAAEDPQLVVLback to top mRNA from alignment at C-linearis_contig11:2824513..2830040- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1335.1 ID=mRNA_C-linearis_contig11.1335.1|Name=mRNA_C-linearis_contig11.1335.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5528bp|location=Sequence derived from alignment at C-linearis_contig11:2824513..2830040- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:2824513..2830040- >mRNA_C-linearis_contig11.1335.1 ID=mRNA_C-linearis_contig11.1335.1|Name=mRNA_C-linearis_contig11.1335.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at C-linearis_contig11:2824513..2830040- (Chordaria linearis ClinC8C monoicous)back to top |